Wall clock time and date at job start Tue Mar 31 2020 12:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47451 * 2 1 4 4 H 1.08999 * 109.46877 * 304.99945 * 3 2 1 5 5 N 1.46497 * 109.46988 * 64.99687 * 3 2 1 6 6 C 1.34770 * 120.00028 * 274.99949 * 5 3 2 7 7 O 1.21276 * 120.00189 * 0.02562 * 6 5 3 8 8 C 1.50709 * 119.99674 * 180.02562 * 6 5 3 9 9 C 1.53003 * 109.46721 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47142 * 55.00043 * 9 8 6 11 11 C 1.50701 * 109.47005 * 294.99715 * 9 8 6 12 12 H 1.07997 * 119.99872 * 325.85316 * 11 9 8 13 13 C 1.37876 * 119.99904 * 145.85776 * 11 9 8 14 14 N 1.31516 * 119.99900 * 6.11364 * 13 11 9 15 15 Si 1.86801 * 119.99941 * 186.11952 * 13 11 9 16 16 H 1.48503 * 109.47341 * 89.99730 * 15 13 11 17 17 H 1.48497 * 109.47129 * 209.99685 * 15 13 11 18 18 H 1.48503 * 109.46864 * 329.99384 * 15 13 11 19 19 C 1.50700 * 109.46847 * 174.99960 * 9 8 6 20 20 C 1.38242 * 119.99879 * 63.45427 * 19 9 8 21 21 C 1.38239 * 119.99460 * 179.78554 * 20 19 9 22 22 C 1.38224 * 120.00322 * 0.44421 * 21 20 19 23 23 C 1.38241 * 120.00285 * 359.81428 * 22 21 20 24 24 C 1.38229 * 120.00000 * 243.72908 * 19 9 8 25 25 C 1.53005 * 109.46883 * 184.99972 * 3 2 1 26 26 H 1.09003 * 109.46361 * 184.99777 * 25 3 2 27 27 O 1.42895 * 109.46959 * 304.99638 * 25 3 2 28 28 C 1.53002 * 109.47165 * 65.00067 * 25 3 2 29 29 C 1.52994 * 109.46811 * 174.99925 * 28 25 3 30 30 H 1.08998 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46816 * 300.00438 * 1 2 3 32 32 H 1.09002 * 109.46928 * 60.00119 * 1 2 3 33 33 H 1.08999 * 109.47197 * 239.99244 * 2 1 3 34 34 H 1.09002 * 109.46928 * 119.99880 * 2 1 3 35 35 H 0.97008 * 119.99581 * 95.00533 * 5 3 2 36 36 H 1.09002 * 109.47073 * 299.99673 * 8 6 5 37 37 H 1.08995 * 109.47404 * 60.00032 * 8 6 5 38 38 H 0.96998 * 119.99813 * 180.02562 * 14 13 11 39 39 H 1.08001 * 120.00061 * 0.02562 * 20 19 9 40 40 H 1.07997 * 119.99336 * 180.27645 * 21 20 19 41 41 H 1.08007 * 120.00450 * 179.82946 * 22 21 20 42 42 H 1.07992 * 120.00406 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.00242 * 359.97438 * 24 19 9 44 44 H 0.96697 * 113.99932 * 60.01049 * 27 25 3 45 45 H 1.09002 * 109.46753 * 295.00070 * 28 25 3 46 46 H 1.09001 * 109.47101 * 54.99481 * 28 25 3 47 47 H 1.09004 * 109.46898 * 179.97438 * 29 28 25 48 48 H 1.09002 * 109.47335 * 299.99146 * 29 28 25 49 49 H 1.08991 * 109.47578 * 60.00066 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6644 1.3668 7 8 -0.3395 2.6320 0.4343 8 6 0.0368 3.3387 2.6544 9 6 -1.3825 3.8944 2.5210 10 1 -2.0594 3.0942 2.2219 11 6 -1.3999 4.9829 1.4790 12 1 -0.5429 5.6290 1.3587 13 6 -2.5099 5.1540 0.6792 14 7 -3.5972 4.4492 0.9040 15 14 -2.4692 6.3867 -0.7237 16 1 -1.9902 5.7155 -1.9588 17 1 -3.8349 6.9240 -0.9503 18 1 -1.5503 7.5006 -0.3774 19 6 -1.8271 4.4597 3.8454 20 6 -1.1607 5.5390 4.3949 21 6 -1.5713 6.0603 5.6076 22 6 -2.6425 5.4966 6.2751 23 6 -3.3056 4.4139 5.7281 24 6 -2.8977 3.8954 4.5133 25 6 3.5649 1.4442 -0.1257 26 1 3.9356 2.4653 -0.0366 27 8 4.1293 0.6403 0.9121 28 6 3.9650 0.8733 -1.4877 29 6 5.4803 0.9898 -1.6642 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2720 2.1231 1.9978 36 1 0.0680 2.6146 3.4686 37 1 0.7282 4.1541 2.8667 38 1 -4.3780 4.5693 0.3411 39 1 -0.3217 5.9774 3.8750 40 1 -1.0535 6.9063 6.0348 41 1 -2.9616 5.9021 7.2239 42 1 -4.1427 3.9737 6.2494 43 1 -3.4158 3.0496 4.0859 44 1 3.8426 -0.2831 0.8943 45 1 3.6723 -0.1752 -1.5424 46 1 3.4631 1.4323 -2.2775 47 1 5.7654 0.5827 -2.6344 48 1 5.7729 2.0384 -1.6097 49 1 5.9821 0.4309 -0.8745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456572963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:17 Heat of formation + Delta-G solvation = -105.530000 kcal Electronic energy + Delta-G solvation = -27696.885169 eV Core-core repulsion = 24008.077846 eV Total energy + Delta-G solvation = -3688.807323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.05342 -39.91382 -38.99073 -36.01399 -35.34375 -33.78033 -33.46433 -32.94116 -31.49611 -30.38039 -29.04586 -27.32805 -25.00552 -24.41029 -23.27409 -23.04841 -21.61425 -21.24523 -20.71391 -18.51598 -18.02487 -17.62812 -17.10373 -16.73990 -16.68573 -16.38261 -16.16556 -15.69863 -15.47677 -15.33889 -14.91142 -14.50414 -14.18998 -14.08093 -13.94910 -13.64390 -13.55615 -13.41926 -13.19109 -13.12775 -12.90545 -12.83961 -12.64264 -12.51831 -12.49829 -12.36160 -11.90073 -11.82240 -11.69862 -11.60374 -11.53105 -11.29555 -10.94094 -10.93160 -10.54792 -10.25111 -9.72330 -9.53832 -9.17868 -8.03325 -6.05060 0.78214 0.84993 1.34400 1.38751 1.43370 2.08865 2.44017 2.46280 3.19490 3.37262 3.48875 3.69129 3.85567 4.07985 4.17958 4.20336 4.26545 4.31811 4.36568 4.42779 4.46733 4.56317 4.63662 4.66815 4.72364 4.75018 4.80521 4.88259 4.93796 4.98469 5.01016 5.03936 5.15186 5.18785 5.29684 5.35028 5.38728 5.43145 5.49342 5.54229 5.65447 5.78342 5.81372 5.84248 5.96458 6.18837 6.43349 6.47733 6.81550 6.89548 7.02583 7.57504 7.72721 9.06410 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.003874 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.231079 B = 7226.658023 C = 8290.008557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.113 3.887 4 H 0.061 0.939 5 N -0.722 5.722 6 C 0.511 3.489 7 O -0.543 6.543 8 C -0.118 4.118 9 C 0.086 3.914 10 H 0.024 0.976 11 C -0.481 4.481 12 H 0.044 0.956 13 C 0.026 3.974 14 N -0.916 5.916 15 Si 0.932 3.068 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.264 1.264 19 C -0.045 4.045 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.128 4.128 24 C -0.144 4.144 25 C 0.115 3.885 26 H 0.095 0.905 27 O -0.562 6.562 28 C -0.152 4.152 29 C -0.145 4.145 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.409 0.591 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.252 0.748 39 H 0.114 0.886 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.386 0.614 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.048 0.952 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.309 -7.987 3.434 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.008 3.992 4 H 0.080 0.920 5 N -0.377 5.377 6 C 0.298 3.702 7 O -0.419 6.419 8 C -0.158 4.158 9 C 0.066 3.934 10 H 0.042 0.958 11 C -0.519 4.519 12 H 0.063 0.937 13 C -0.172 4.172 14 N -0.556 5.556 15 Si 0.759 3.241 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.046 4.046 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.166 4.166 23 C -0.146 4.146 24 C -0.162 4.162 25 C 0.055 3.945 26 H 0.113 0.887 27 O -0.370 6.370 28 C -0.190 4.190 29 C -0.202 4.202 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.245 0.755 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.132 0.868 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.111 0.889 44 H 0.236 0.764 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.846 -7.463 2.837 16.857 hybrid contribution -0.847 0.263 -1.148 1.451 sum 13.999 -7.200 1.689 15.832 Atomic orbital electron populations 1.21691 0.97007 1.00102 1.00940 1.21947 0.95170 0.95818 1.03589 1.21702 0.96031 0.93919 0.87593 0.92037 1.45937 1.16403 1.58520 1.16830 1.20848 0.81447 0.77692 0.90196 1.90751 1.52032 1.57739 1.41331 1.21673 0.99646 1.00148 0.94355 1.17590 0.91287 0.95275 0.89206 0.95763 1.20938 0.99626 1.15055 1.16236 0.93727 1.25429 0.95641 0.97264 0.98899 1.70052 1.03172 1.42741 1.39660 0.85967 0.77040 0.80016 0.81032 1.21623 1.21377 1.18882 1.20598 0.94401 0.95050 0.94537 1.21039 1.01010 0.96578 0.96038 1.21368 0.97758 1.00212 0.95115 1.21257 0.97056 0.97154 1.01131 1.21289 1.00237 0.97607 0.95499 1.21099 0.98110 1.01050 0.95976 1.22048 0.88706 0.95780 0.87946 0.88668 1.86547 1.72032 1.25833 1.52573 1.22215 0.97871 1.02652 0.96309 1.21671 0.94626 1.01835 1.02085 0.92487 0.94954 0.95108 0.88951 0.89807 0.75516 0.89681 0.89122 0.93871 0.86781 0.84188 0.83863 0.85051 0.88878 0.76421 0.89701 0.91346 0.91891 0.93249 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.51 71.98 0.61 -3.80 16 2 C -0.13 -2.78 4.89 30.59 0.15 -2.63 16 3 C 0.11 2.84 2.13 44.99 0.10 2.93 16 4 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 5 N -0.72 -20.83 5.01 -442.53 -2.22 -23.05 16 6 C 0.51 20.30 6.15 87.66 0.54 20.84 16 7 O -0.54 -27.20 12.12 -3.02 -0.04 -27.24 16 8 C -0.12 -4.63 4.95 29.85 0.15 -4.48 16 9 C 0.09 4.25 1.67 -12.28 -0.02 4.22 16 10 H 0.02 1.42 6.98 -2.39 -0.02 1.40 16 11 C -0.48 -26.60 6.37 25.60 0.16 -26.43 16 12 H 0.04 2.45 7.82 -2.91 -0.02 2.42 16 13 C 0.03 1.54 5.45 84.65 0.46 2.00 16 14 N -0.92 -56.73 12.87 21.45 0.28 -56.45 16 15 Si 0.93 47.19 29.54 68.60 2.03 49.22 16 16 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 17 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 18 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 19 C -0.05 -2.05 4.77 -19.87 -0.09 -2.15 16 20 C -0.13 -5.11 8.86 22.27 0.20 -4.91 16 21 C -0.13 -4.20 10.05 22.27 0.22 -3.97 16 22 C -0.15 -4.68 10.05 22.27 0.22 -4.46 16 23 C -0.13 -4.58 10.05 22.27 0.22 -4.35 16 24 C -0.14 -6.28 9.67 22.27 0.22 -6.06 16 25 C 0.11 2.13 2.86 30.60 0.09 2.22 16 26 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 27 O -0.56 -9.29 12.51 -148.98 -1.86 -11.15 16 28 C -0.15 -2.30 5.25 30.59 0.16 -2.14 16 29 C -0.14 -2.00 9.81 71.98 0.71 -1.29 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.22 5.64 -2.39 -0.01 1.21 16 32 H 0.03 1.12 7.85 -2.39 -0.02 1.10 16 33 H 0.09 1.55 6.45 -2.39 -0.02 1.54 16 34 H 0.08 1.48 7.00 -2.39 -0.02 1.46 16 35 H 0.41 9.67 8.38 -92.70 -0.78 8.89 16 36 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.09 3.24 7.78 -2.39 -0.02 3.22 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.11 4.39 7.76 -2.91 -0.02 4.37 16 40 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 43 H 0.09 4.30 7.95 -2.91 -0.02 4.27 16 44 H 0.39 4.15 7.31 -74.06 -0.54 3.61 16 45 H 0.08 1.03 6.70 -2.39 -0.02 1.02 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.06 0.85 7.82 -2.39 -0.02 0.83 16 Total: -1.00 -73.37 389.22 1.90 -71.47 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.38 Total: 31.68 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 4.09 Total: -34.48 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.94 Total: -79.50 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.90 Total: -38.39 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -73.37 1.90 -71.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456572963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.062 kcal (2) G-P(sol) polarization free energy of solvation -73.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds