Wall clock time and date at job start Tue Mar 31 2020 14:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.42899 * 113.99778 * 150.00013 * 4 2 1 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 2 7 7 C 1.38365 * 119.85439 * 269.72188 * 6 5 4 8 8 C 1.37956 * 120.14604 * 179.72711 * 7 6 5 9 9 C 1.39575 * 119.85049 * 0.54893 * 8 7 6 10 10 C 1.47852 * 120.14704 * 179.70411 * 9 8 7 11 11 O 1.21543 * 120.00478 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99319 * 0.02614 * 10 9 8 13 13 C 1.46496 * 119.99770 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47446 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47236 * 300.00363 * 14 13 12 16 16 C 1.53000 * 109.46978 * 60.00177 * 14 13 12 17 17 C 1.50694 * 109.47298 * 179.97438 * 14 13 12 18 18 H 1.07999 * 120.00133 * 0.02562 * 17 14 13 19 19 C 1.37882 * 120.00141 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99729 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00298 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47361 * 90.00187 * 21 19 17 23 23 H 1.48502 * 109.47034 * 210.00476 * 21 19 17 24 24 H 1.48509 * 109.47098 * 330.00091 * 21 19 17 25 25 C 1.39580 * 119.71270 * 359.72610 * 9 8 7 26 26 C 1.37949 * 119.85288 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 28 28 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 29 29 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 31 31 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 32 32 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 34 34 H 1.08997 * 109.47171 * 299.99768 * 5 4 2 35 35 H 1.08997 * 109.47442 * 59.99964 * 5 4 2 36 36 H 1.08000 * 119.92703 * 0.02562 * 7 6 5 37 37 H 1.07995 * 120.07611 * 180.25511 * 8 7 6 38 38 H 0.96997 * 120.00444 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47235 * 300.00164 * 13 12 10 40 40 H 1.09004 * 109.47036 * 59.99722 * 13 12 10 41 41 H 1.08996 * 109.47086 * 59.99747 * 15 14 13 42 42 H 1.08997 * 109.47069 * 179.97438 * 15 14 13 43 43 H 1.09004 * 109.46897 * 299.99682 * 15 14 13 44 44 H 1.08998 * 109.47108 * 59.99530 * 16 14 13 45 45 H 1.08994 * 109.47504 * 180.02562 * 16 14 13 46 46 H 1.09005 * 109.47198 * 300.00167 * 16 14 13 47 47 H 0.96993 * 119.99819 * 179.97438 * 20 19 17 48 48 H 1.08000 * 120.06983 * 179.97438 * 25 9 8 49 49 H 1.08005 * 119.93174 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9887 6 6 3.6698 -1.9979 2.2750 7 6 4.4249 -1.3073 3.2063 8 6 4.7931 -1.9160 4.3883 9 6 4.4119 -3.2351 4.6386 10 6 4.8085 -3.8960 5.9004 11 8 4.4756 -5.0449 6.1155 12 7 5.5394 -3.2242 6.8121 13 6 5.9319 -3.8787 8.0625 14 6 6.7491 -2.9046 8.9134 15 6 8.0021 -2.4822 8.1436 16 6 5.9034 -1.6690 9.2282 17 6 7.1524 -3.5776 10.2000 18 1 6.8559 -4.5983 10.3914 19 6 7.9009 -2.8908 11.1323 20 7 8.2624 -1.6480 10.8989 21 14 8.4013 -3.7253 12.7268 22 1 9.7098 -4.4027 12.5415 23 1 8.5184 -2.7081 13.8023 24 1 7.3736 -4.7287 13.1041 25 6 3.6550 -3.9280 3.6924 26 6 3.2891 -3.3059 2.5168 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.1809 -2.0707 0.1987 35 1 4.0200 -0.5875 0.7126 36 1 4.7227 -0.2880 3.0096 37 1 5.3791 -1.3746 5.1162 38 1 5.8054 -2.3074 6.6403 39 1 5.0393 -4.1799 8.6107 40 1 6.5348 -4.7587 7.8383 41 1 7.7100 -1.9952 7.2133 42 1 8.5841 -1.7879 8.7497 43 1 8.6047 -3.3625 7.9194 44 1 5.0107 -1.9699 9.7765 45 1 6.4857 -0.9748 9.8340 46 1 5.6113 -1.1820 8.2978 47 1 8.7886 -1.1647 11.5549 48 1 3.3572 -4.9490 3.8800 49 1 2.7037 -3.8410 1.7835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457985801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:54 Heat of formation + Delta-G solvation = -74.972262 kcal Electronic energy + Delta-G solvation = -26239.509792 eV Core-core repulsion = 22552.027552 eV Total energy + Delta-G solvation = -3687.482240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.11374 -38.97792 -37.96496 -36.32856 -33.65751 -33.29921 -31.65638 -31.12753 -30.57116 -27.67921 -26.92001 -25.73461 -25.50952 -24.73794 -22.73889 -22.22452 -21.68271 -20.08697 -18.87277 -17.83459 -17.20431 -16.25360 -16.02232 -15.78840 -15.30094 -14.90776 -14.76665 -14.69923 -14.39957 -14.21193 -13.72052 -13.52044 -13.20097 -13.02864 -12.93989 -12.86711 -12.61345 -12.47834 -12.29987 -12.18362 -11.81859 -11.45312 -11.39007 -11.22918 -11.13882 -11.05480 -10.86997 -10.69683 -10.39516 -10.20681 -9.93402 -9.65159 -9.64320 -9.27500 -9.07371 -8.97584 -8.79719 -8.45027 -8.30731 -6.02340 -4.12249 0.75446 1.29674 2.91850 3.28512 3.35474 3.39308 3.51324 3.69354 3.99731 4.39941 4.41401 4.53704 4.64362 4.68180 4.80291 4.81173 4.95050 5.01036 5.13066 5.20745 5.24443 5.28234 5.37266 5.42116 5.45039 5.50201 5.69797 5.79455 5.82625 5.89012 6.16569 6.21704 6.32101 6.35737 6.37370 6.50223 6.75644 6.77154 6.81139 6.89446 6.93556 7.00586 7.01281 7.34598 7.54944 7.69211 8.00230 8.02487 8.14483 8.37858 8.65509 8.88346 9.53460 10.99157 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025722 B = 0.002175 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.303523 B =12871.302850 C =13489.261393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.375 6.375 5 C 0.103 3.897 6 C -0.076 4.076 7 C -0.105 4.105 8 C -0.089 4.089 9 C -0.117 4.117 10 C 0.545 3.455 11 O -0.548 6.548 12 N -0.709 5.709 13 C 0.131 3.869 14 C 0.055 3.945 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.066 4.066 26 C -0.108 4.108 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.397 0.603 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.005 0.995 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.086 0.914 46 H 0.005 0.995 47 H 0.260 0.740 48 H 0.137 0.863 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.267 5.741 -22.918 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.294 6.294 5 C 0.027 3.973 6 C -0.076 4.076 7 C -0.123 4.123 8 C -0.108 4.108 9 C -0.121 4.121 10 C 0.331 3.669 11 O -0.428 6.428 12 N -0.360 5.360 13 C 0.008 3.992 14 C 0.054 3.946 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.085 4.085 26 C -0.126 4.126 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.234 0.766 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.105 0.895 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.105 0.895 46 H 0.024 0.976 47 H 0.070 0.930 48 H 0.155 0.845 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.478 5.074 -22.450 25.289 hybrid contribution 0.628 0.116 0.588 0.868 sum -9.850 5.191 -21.862 24.534 Atomic orbital electron populations 1.21866 0.93529 1.02790 1.02563 1.22106 0.95115 0.92489 0.88131 1.22311 1.01572 0.96792 1.02697 1.88048 1.36015 1.69852 1.35523 1.21361 0.86247 0.95323 0.94396 1.19715 0.97955 0.94219 0.95747 1.20954 0.98308 0.99755 0.93293 1.21378 0.98401 0.93878 0.97121 1.20221 1.01113 0.94852 0.95874 1.18283 0.78968 0.86145 0.83497 1.90731 1.55936 1.17434 1.78706 1.46268 1.52935 1.17134 1.19640 1.21773 0.98671 0.96562 0.82154 1.18370 0.91293 0.91772 0.93130 1.21837 0.99900 1.00522 0.96623 1.21838 0.98963 1.00037 0.98060 1.20973 1.33215 0.99059 1.01086 0.92396 1.24888 0.95623 0.94860 0.98216 1.69802 1.37788 1.09636 1.35233 0.86560 0.78947 0.79204 0.83091 1.20726 1.21278 1.19900 1.21267 0.94842 1.00331 0.92057 1.20984 0.99748 0.94464 0.97389 0.91671 0.91291 0.91953 0.92253 0.91609 0.92450 0.91680 0.92343 0.92337 0.85433 0.85213 0.76608 0.92488 0.92503 0.97590 0.89517 0.95369 0.95344 0.89520 0.97584 0.93007 0.84495 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.56 37.16 0.36 -0.59 16 2 C 0.08 0.56 3.34 -26.73 -0.09 0.47 16 3 C -0.18 -1.10 9.53 37.16 0.35 -0.74 16 4 O -0.37 -3.70 9.97 -35.23 -0.35 -4.05 16 5 C 0.10 0.87 5.87 36.01 0.21 1.08 16 6 C -0.08 -0.81 5.52 -104.53 -0.58 -1.39 16 7 C -0.11 -1.15 9.68 -39.64 -0.38 -1.54 16 8 C -0.09 -1.13 9.54 -39.19 -0.37 -1.50 16 9 C -0.12 -1.76 5.87 -104.96 -0.62 -2.37 16 10 C 0.54 10.05 7.77 -12.32 -0.10 9.95 16 11 O -0.55 -11.87 16.35 5.33 0.09 -11.79 16 12 N -0.71 -13.08 4.91 -61.25 -0.30 -13.38 16 13 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 14 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 16 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 17 C -0.50 -13.23 8.01 -34.44 -0.28 -13.50 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.89 -23.56 9.35 55.43 0.52 -23.04 16 21 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.07 -0.89 9.60 -39.19 -0.38 -1.26 16 26 C -0.11 -1.19 9.68 -39.64 -0.38 -1.58 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.41 8.03 -51.93 -0.42 -0.01 16 35 H 0.06 0.42 7.81 -51.93 -0.41 0.01 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.50 6.41 -52.49 -0.34 1.16 16 38 H 0.40 6.59 4.20 -40.82 -0.17 6.42 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 42 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 46 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 48 H 0.14 1.83 7.65 -52.49 -0.40 1.43 16 49 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -29.64 392.77 -9.07 -38.71 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.08 Total: 4.54 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.84 Total: -12.65 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.22 Total: -36.42 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.26 Total: -15.84 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.64 -9.07 -38.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457985801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.266 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds