Wall clock time and date at job start Tue Mar 31 2020 14:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.42899 * 113.99778 * 150.00013 * 4 2 1 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 2 7 7 C 1.38365 * 119.85439 * 269.72188 * 6 5 4 8 8 C 1.37956 * 120.14604 * 179.72711 * 7 6 5 9 9 C 1.39575 * 119.85049 * 0.54893 * 8 7 6 10 10 C 1.47852 * 120.14704 * 179.70411 * 9 8 7 11 11 O 1.21543 * 120.00478 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99319 * 0.02614 * 10 9 8 13 13 C 1.46496 * 119.99770 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47446 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47236 * 300.00363 * 14 13 12 16 16 C 1.53000 * 109.46978 * 60.00177 * 14 13 12 17 17 C 1.50694 * 109.47298 * 179.97438 * 14 13 12 18 18 H 1.07999 * 120.00133 * 0.02562 * 17 14 13 19 19 C 1.37882 * 120.00141 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99729 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00298 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47361 * 90.00187 * 21 19 17 23 23 H 1.48502 * 109.47034 * 210.00476 * 21 19 17 24 24 H 1.48509 * 109.47098 * 330.00091 * 21 19 17 25 25 C 1.39580 * 119.71270 * 359.72610 * 9 8 7 26 26 C 1.37949 * 119.85288 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 28 28 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 29 29 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 31 31 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 32 32 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 34 34 H 1.08997 * 109.47171 * 299.99768 * 5 4 2 35 35 H 1.08997 * 109.47442 * 59.99964 * 5 4 2 36 36 H 1.08000 * 119.92703 * 0.02562 * 7 6 5 37 37 H 1.07995 * 120.07611 * 180.25511 * 8 7 6 38 38 H 0.96997 * 120.00444 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47235 * 300.00164 * 13 12 10 40 40 H 1.09004 * 109.47036 * 59.99722 * 13 12 10 41 41 H 1.08996 * 109.47086 * 59.99747 * 15 14 13 42 42 H 1.08997 * 109.47069 * 179.97438 * 15 14 13 43 43 H 1.09004 * 109.46897 * 299.99682 * 15 14 13 44 44 H 1.08998 * 109.47108 * 59.99530 * 16 14 13 45 45 H 1.08994 * 109.47504 * 180.02562 * 16 14 13 46 46 H 1.09005 * 109.47198 * 300.00167 * 16 14 13 47 47 H 0.96993 * 119.99819 * 179.97438 * 20 19 17 48 48 H 1.08000 * 120.06983 * 179.97438 * 25 9 8 49 49 H 1.08005 * 119.93174 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9887 6 6 3.6698 -1.9979 2.2750 7 6 4.4249 -1.3073 3.2063 8 6 4.7931 -1.9160 4.3883 9 6 4.4119 -3.2351 4.6386 10 6 4.8085 -3.8960 5.9004 11 8 4.4756 -5.0449 6.1155 12 7 5.5394 -3.2242 6.8121 13 6 5.9319 -3.8787 8.0625 14 6 6.7491 -2.9046 8.9134 15 6 8.0021 -2.4822 8.1436 16 6 5.9034 -1.6690 9.2282 17 6 7.1524 -3.5776 10.2000 18 1 6.8559 -4.5983 10.3914 19 6 7.9009 -2.8908 11.1323 20 7 8.2624 -1.6480 10.8989 21 14 8.4013 -3.7253 12.7268 22 1 9.7098 -4.4027 12.5415 23 1 8.5184 -2.7081 13.8023 24 1 7.3736 -4.7287 13.1041 25 6 3.6550 -3.9280 3.6924 26 6 3.2891 -3.3059 2.5168 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.1809 -2.0707 0.1987 35 1 4.0200 -0.5875 0.7126 36 1 4.7227 -0.2880 3.0096 37 1 5.3791 -1.3746 5.1162 38 1 5.8054 -2.3074 6.6403 39 1 5.0393 -4.1799 8.6107 40 1 6.5348 -4.7587 7.8383 41 1 7.7100 -1.9952 7.2133 42 1 8.5841 -1.7879 8.7497 43 1 8.6047 -3.3625 7.9194 44 1 5.0107 -1.9699 9.7765 45 1 6.4857 -0.9748 9.8340 46 1 5.6113 -1.1820 8.2978 47 1 8.7886 -1.1647 11.5549 48 1 3.3572 -4.9490 3.8800 49 1 2.7037 -3.8410 1.7835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457985801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:53 Heat of formation + Delta-G solvation = -90.502860 kcal Electronic energy + Delta-G solvation = -26240.183249 eV Core-core repulsion = 22552.027552 eV Total energy + Delta-G solvation = -3688.155697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.32046 -39.96844 -38.86675 -38.07078 -35.14588 -34.21557 -32.97614 -32.15165 -31.87036 -28.26192 -27.92676 -27.58204 -27.33315 -26.28672 -23.68121 -23.34023 -22.18378 -21.37780 -20.65834 -19.17128 -17.90708 -17.74037 -17.16200 -16.90489 -16.56240 -16.33731 -16.31117 -15.77125 -15.43292 -15.18273 -14.77149 -14.66759 -14.64326 -14.34968 -14.12812 -13.94409 -13.63972 -13.33363 -13.20514 -13.14085 -13.10903 -12.97663 -12.69850 -12.60683 -12.33755 -12.26866 -12.20157 -12.13044 -12.02131 -11.57935 -11.50641 -11.33679 -10.97472 -10.71343 -10.50472 -10.40962 -10.14569 -9.98732 -9.80034 -8.02904 -6.18421 -0.26580 0.38059 1.42344 1.45127 1.53418 1.76821 2.22848 2.48150 2.64501 3.09321 3.20612 3.65827 3.76160 3.87804 3.97663 4.10494 4.15536 4.26503 4.33293 4.35030 4.40689 4.48217 4.50228 4.62792 4.67978 4.78411 4.79775 4.91968 4.95809 4.96306 4.99162 5.01667 5.03169 5.09782 5.17370 5.24616 5.32190 5.33968 5.36439 5.36890 5.50218 5.53911 5.65543 5.66828 5.86100 6.13209 6.19415 6.34106 6.42204 6.58476 6.84980 7.19960 7.48964 8.96196 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025722 B = 0.002175 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.303523 B =12871.302850 C =13489.261393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.399 6.399 5 C 0.102 3.898 6 C -0.070 4.070 7 C -0.104 4.104 8 C -0.089 4.089 9 C -0.142 4.142 10 C 0.545 3.455 11 O -0.589 6.589 12 N -0.703 5.703 13 C 0.146 3.854 14 C 0.051 3.949 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.528 4.528 18 H 0.044 0.956 19 C 0.027 3.973 20 N -0.898 5.898 21 Si 0.946 3.054 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.277 1.277 25 C -0.076 4.076 26 C -0.105 4.105 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.408 0.592 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.261 0.739 48 H 0.128 0.872 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.625 7.208 -25.362 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.320 6.320 5 C 0.026 3.974 6 C -0.070 4.070 7 C -0.122 4.122 8 C -0.108 4.108 9 C -0.145 4.145 10 C 0.333 3.667 11 O -0.471 6.471 12 N -0.354 5.354 13 C 0.022 3.978 14 C 0.050 3.950 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.566 4.566 18 H 0.063 0.937 19 C -0.172 4.172 20 N -0.537 5.537 21 Si 0.773 3.227 22 H -0.205 1.205 23 H -0.208 1.208 24 H -0.202 1.202 25 C -0.095 4.095 26 C -0.123 4.123 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.171 0.829 37 H 0.157 0.843 38 H 0.246 0.754 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.146 0.854 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.833 6.569 -24.911 27.948 hybrid contribution 0.679 -0.305 1.238 1.445 sum -10.153 6.264 -23.674 26.510 Atomic orbital electron populations 1.21894 0.93327 1.02632 1.02919 1.22302 0.95354 0.92844 0.87874 1.22302 1.01712 0.96322 1.02867 1.88010 1.36497 1.70329 1.37154 1.21454 0.86414 0.96166 0.93387 1.20092 0.96532 0.93961 0.96441 1.21270 0.97673 1.00824 0.92435 1.21501 0.98299 0.92877 0.98135 1.19984 1.03684 0.96129 0.94745 1.18851 0.77832 0.85662 0.84313 1.90700 1.57416 1.19303 1.79717 1.46065 1.53173 1.17502 1.18695 1.21353 0.97392 0.95866 0.83164 1.18372 0.91979 0.92133 0.92521 1.21680 0.99004 0.99764 0.97456 1.21686 0.97955 0.99290 0.99017 1.21242 1.33757 0.98833 1.02787 0.93722 1.25463 0.95729 0.95473 1.00585 1.69900 1.37817 1.10163 1.35814 0.85743 0.78415 0.78338 0.80202 1.20474 1.20779 1.20165 1.21321 0.95131 1.00199 0.92893 1.21234 0.99361 0.94888 0.96790 0.92886 0.89393 0.92363 0.90601 0.92854 0.92195 0.90130 0.90510 0.90625 0.82867 0.84277 0.75356 0.94161 0.94036 0.94529 0.91646 0.96220 0.96284 0.91630 0.94585 0.92981 0.85395 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.56 71.98 0.69 -0.89 16 2 C 0.07 0.83 3.34 30.60 0.10 0.94 16 3 C -0.17 -1.71 9.53 71.98 0.69 -1.02 16 4 O -0.40 -6.76 9.97 -148.98 -1.49 -8.25 16 5 C 0.10 1.36 5.87 71.24 0.42 1.78 16 6 C -0.07 -1.28 5.52 -19.80 -0.11 -1.39 16 7 C -0.10 -1.98 9.68 22.23 0.22 -1.77 16 8 C -0.09 -2.10 9.54 22.53 0.21 -1.88 16 9 C -0.14 -4.18 5.87 -20.09 -0.12 -4.30 16 10 C 0.54 20.34 7.77 86.79 0.67 21.02 16 11 O -0.59 -26.37 16.35 -3.85 -0.06 -26.43 16 12 N -0.70 -25.85 4.91 -465.98 -2.29 -28.14 16 13 C 0.15 6.42 4.50 86.38 0.39 6.81 16 14 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 15 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 16 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 17 C -0.53 -28.16 8.01 25.60 0.21 -27.95 16 18 H 0.04 2.44 7.74 -2.91 -0.02 2.41 16 19 C 0.03 1.45 5.15 84.66 0.44 1.88 16 20 N -0.90 -47.92 9.35 21.45 0.20 -47.72 16 21 Si 0.95 42.89 29.54 68.60 2.03 44.91 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 C -0.08 -2.01 9.60 22.53 0.22 -1.79 16 26 C -0.10 -2.10 9.68 22.23 0.22 -1.88 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.61 7.79 -2.39 -0.02 0.59 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.55 7.87 -2.39 -0.02 0.53 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.76 8.03 -2.39 -0.02 0.74 16 35 H 0.08 0.77 7.81 -2.39 -0.02 0.75 16 36 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.14 2.90 6.41 -2.91 -0.02 2.88 16 38 H 0.41 13.00 4.20 -92.71 -0.39 12.61 16 39 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 42 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 46 H 0.04 1.35 6.86 -2.38 -0.02 1.34 16 47 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 48 H 0.13 3.50 7.65 -2.91 -0.02 3.48 16 49 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -64.73 392.77 4.30 -60.44 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.54 Total: 23.03 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 5.37 Total: -17.85 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -2.09 Total: -75.85 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.55 Total: -34.68 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -64.73 4.30 -60.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457985801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.067 kcal (2) G-P(sol) polarization free energy of solvation -64.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds