Wall clock time and date at job start Tue Mar 31 2020 13:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47095 * 2 1 4 4 O 1.42896 * 109.47334 * 120.00332 * 2 1 3 5 5 C 1.35902 * 117.00094 * 85.00389 * 4 2 1 6 6 C 1.38755 * 120.05673 * 354.84991 * 5 4 2 7 7 C 1.38122 * 119.94773 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.05201 * 359.97438 * 7 6 5 9 9 C 1.38241 * 120.11277 * 0.02562 * 8 7 6 10 10 C 1.38164 * 120.05823 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.03111 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.47204 * 265.02318 * 11 10 9 13 13 O 1.21277 * 120.00466 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00262 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00701 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47496 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47171 * 299.99970 * 16 15 14 18 18 C 1.53006 * 109.47033 * 59.99902 * 16 15 14 19 19 C 1.50701 * 109.46882 * 179.97438 * 16 15 14 20 20 H 1.07999 * 120.00380 * 358.23913 * 19 16 15 21 21 C 1.37879 * 119.99826 * 178.24221 * 19 16 15 22 22 N 1.31517 * 120.00060 * 2.86610 * 21 19 16 23 23 Si 1.86798 * 119.99974 * 182.87306 * 21 19 16 24 24 H 1.48496 * 109.47366 * 94.98653 * 23 21 19 25 25 H 1.48509 * 109.46901 * 214.98370 * 23 21 19 26 26 H 1.48492 * 109.47091 * 334.98118 * 23 21 19 27 27 H 1.08993 * 109.47770 * 59.99700 * 1 2 3 28 28 H 1.09007 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47455 * 299.99350 * 1 2 3 30 30 H 1.09007 * 109.46643 * 240.00420 * 2 1 3 31 31 H 1.08995 * 109.47164 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47303 * 300.00629 * 3 2 1 33 33 H 1.09004 * 109.46905 * 59.99896 * 3 2 1 34 34 H 1.07999 * 120.02606 * 0.02562 * 6 5 4 35 35 H 1.07993 * 119.97169 * 179.72966 * 7 6 5 36 36 H 1.08002 * 119.94144 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.97140 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.47089 * 25.02554 * 11 10 9 39 39 H 1.09001 * 109.47328 * 145.02153 * 11 10 9 40 40 H 0.97004 * 119.99660 * 359.97438 * 14 12 11 41 41 H 1.08997 * 109.46721 * 300.00208 * 15 14 12 42 42 H 1.09001 * 109.46887 * 59.99691 * 15 14 12 43 43 H 1.09005 * 109.47166 * 54.19357 * 17 16 15 44 44 H 1.08992 * 109.47182 * 174.19602 * 17 16 15 45 45 H 1.08997 * 109.47320 * 294.19631 * 17 16 15 46 46 H 1.09004 * 109.46823 * 60.00087 * 18 16 15 47 47 H 1.09003 * 109.46791 * 179.97438 * 18 16 15 48 48 H 1.09000 * 109.46979 * 299.99982 * 18 16 15 49 49 H 0.96997 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1127 -2.0268 1.0977 6 6 1.6659 -2.7024 -0.0289 7 6 1.7745 -4.0777 -0.0964 8 6 2.3285 -4.7812 0.9574 9 6 2.7743 -4.1104 2.0809 10 6 2.6679 -2.7348 2.1534 11 6 3.1537 -2.0042 3.3787 12 6 1.9997 -1.7835 4.3223 13 8 0.8918 -2.1799 4.0287 14 7 2.1988 -1.1455 5.4927 15 6 1.0769 -0.9304 6.4099 16 6 1.5701 -0.1888 7.6540 17 6 2.6464 -1.0228 8.3517 18 6 2.1587 1.1622 7.2425 19 6 0.4158 0.0330 8.5971 20 1 -0.5762 -0.2944 8.3229 21 6 0.6261 0.6539 9.8101 22 7 1.8227 1.1031 10.1201 23 14 -0.7884 0.8570 11.0131 24 1 -0.7755 -0.2646 11.9862 25 1 -0.6397 2.1439 11.7392 26 1 -2.0742 0.8533 10.2704 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.2335 -2.1534 -0.8523 35 1 1.4229 -4.6044 -0.9712 36 1 2.4121 -5.8566 0.9029 37 1 3.2062 -4.6622 2.9028 38 1 3.9209 -2.5981 3.8755 39 1 3.5726 -1.0416 3.0856 40 1 3.0850 -0.8288 5.7278 41 1 0.3103 -0.3359 5.9130 42 1 0.6572 -1.8929 6.7027 43 1 3.4332 -1.2701 7.6390 44 1 3.0705 -0.4514 9.1772 45 1 2.2024 -1.9412 8.7357 46 1 1.3918 1.7564 6.7454 47 1 2.5096 1.6907 8.1289 48 1 2.9935 1.0021 6.5601 49 1 1.9708 1.5395 10.9736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457991770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:24 Heat of formation + Delta-G solvation = -66.981646 kcal Electronic energy + Delta-G solvation = -27384.526249 eV Core-core repulsion = 23697.390508 eV Total energy + Delta-G solvation = -3687.135741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.53341 -39.02257 -37.68353 -36.25840 -33.54117 -33.16344 -32.44232 -30.80223 -29.96097 -27.68146 -27.39682 -25.69024 -25.45369 -24.56625 -23.45941 -21.79521 -20.84618 -19.91336 -18.73578 -18.17332 -16.78688 -16.21843 -15.90438 -15.71753 -15.45252 -14.92915 -14.73177 -14.66086 -14.51162 -13.99173 -13.49718 -13.20929 -13.07100 -12.91380 -12.83688 -12.71803 -12.48537 -12.31770 -12.12970 -11.96559 -11.86362 -11.42622 -11.31851 -11.20940 -11.15827 -10.86575 -10.82989 -10.68568 -10.64154 -10.33535 -10.18569 -9.58439 -9.47369 -9.23256 -8.81873 -8.72394 -8.40519 -8.21345 -8.09679 -5.99717 -4.08771 1.30319 1.46915 3.13589 3.23169 3.29679 3.36965 3.41161 3.64073 4.07538 4.43439 4.55752 4.68319 4.72357 4.78466 4.88665 4.99811 5.15688 5.26876 5.27410 5.34438 5.43139 5.47906 5.54900 5.55792 5.57714 5.61677 5.77383 5.92050 6.02420 6.04038 6.29381 6.32424 6.39057 6.42298 6.52303 6.56442 6.79368 6.85570 6.86412 6.98762 7.06410 7.13682 7.40367 7.44066 7.59762 7.72901 8.03593 8.13413 8.23862 8.42224 8.85211 8.93030 9.56665 11.02190 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.002972 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.832407 B = 9418.885088 C =10147.458532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.303 6.303 5 C 0.149 3.851 6 C -0.213 4.213 7 C -0.085 4.085 8 C -0.160 4.160 9 C -0.070 4.070 10 C -0.091 4.091 11 C -0.097 4.097 12 C 0.509 3.491 13 O -0.545 6.545 14 N -0.720 5.720 15 C 0.134 3.866 16 C 0.056 3.944 17 C -0.128 4.128 18 C -0.129 4.129 19 C -0.506 4.506 20 H 0.057 0.943 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.892 3.108 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.397 0.603 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.007 0.993 44 H 0.082 0.918 45 H 0.028 0.972 46 H 0.025 0.975 47 H 0.084 0.916 48 H 0.006 0.994 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -4.787 -20.982 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.217 6.217 5 C 0.103 3.897 6 C -0.231 4.231 7 C -0.103 4.103 8 C -0.178 4.178 9 C -0.089 4.089 10 C -0.092 4.092 11 C -0.137 4.137 12 C 0.295 3.705 13 O -0.423 6.423 14 N -0.371 5.371 15 C 0.011 3.989 16 C 0.055 3.945 17 C -0.186 4.186 18 C -0.187 4.187 19 C -0.544 4.544 20 H 0.075 0.925 21 C -0.135 4.135 22 N -0.525 5.525 23 Si 0.720 3.280 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.100 0.900 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.103 0.897 48 H 0.025 0.975 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.583 -4.813 -20.860 21.893 hybrid contribution -0.527 0.210 0.630 0.848 sum 4.056 -4.603 -20.230 21.140 Atomic orbital electron populations 1.22376 0.95027 1.03245 1.03136 1.22417 0.94507 0.93645 0.87250 1.21856 1.01983 0.93591 1.03192 1.86159 1.80704 1.16307 1.38527 1.18729 0.94453 0.82637 0.93833 1.21190 1.07501 0.95629 0.98819 1.20866 0.97675 0.93340 0.98417 1.20956 1.02591 0.99778 0.94482 1.20850 0.97929 0.92443 0.97636 1.18685 1.03189 0.93167 0.94179 1.20510 0.97611 1.02276 0.93266 1.20362 0.89885 0.78229 0.82052 1.90665 1.25458 1.50784 1.75400 1.46293 1.13642 1.58085 1.19063 1.21645 0.87389 0.99645 0.90174 1.18354 0.94747 0.91505 0.89900 1.21804 0.97123 0.99162 1.00518 1.21827 0.97047 0.99506 1.00332 1.21009 0.93935 1.38305 1.01187 0.92483 1.24877 0.95649 0.95068 0.97891 1.69826 1.20771 1.39266 1.22613 0.86572 0.82769 0.77415 0.81216 1.20778 1.21290 1.19885 0.91267 0.91793 0.91112 0.91163 0.91699 0.90664 0.91174 0.85560 0.86167 0.86095 0.85556 0.88470 0.88054 0.76854 0.92983 0.92942 0.97455 0.89976 0.95281 0.95537 0.89691 0.97472 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.18 37.16 0.34 -1.51 16 2 C 0.08 0.81 2.84 -26.73 -0.08 0.73 16 3 C -0.15 -1.29 9.56 37.16 0.36 -0.94 16 4 O -0.30 -4.23 8.94 -19.43 -0.17 -4.40 16 5 C 0.15 2.09 6.57 -39.22 -0.26 1.84 16 6 C -0.21 -2.54 8.25 -39.43 -0.33 -2.87 16 7 C -0.08 -0.93 10.04 -39.61 -0.40 -1.32 16 8 C -0.16 -1.80 10.04 -39.56 -0.40 -2.20 16 9 C -0.07 -0.89 9.68 -39.61 -0.38 -1.27 16 10 C -0.09 -1.29 4.39 -104.47 -0.46 -1.75 16 11 C -0.10 -1.33 5.55 -29.04 -0.16 -1.49 16 12 C 0.51 9.26 7.82 -10.99 -0.09 9.18 16 13 O -0.55 -12.04 16.03 5.56 0.09 -11.95 16 14 N -0.72 -13.26 4.91 -60.30 -0.30 -13.55 16 15 C 0.13 2.95 4.50 -4.04 -0.02 2.93 16 16 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 17 C -0.13 -2.92 8.05 37.16 0.30 -2.62 16 18 C -0.13 -2.96 8.09 37.16 0.30 -2.66 16 19 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 20 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 21 C 0.07 1.77 5.14 -17.82 -0.09 1.67 16 22 N -0.89 -23.84 9.43 55.43 0.52 -23.32 16 23 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.71 6.94 -51.93 -0.36 0.35 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.62 6.29 -51.93 -0.33 0.29 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.13 1.24 5.44 -52.49 -0.29 0.96 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.10 1.07 8.05 -51.93 -0.42 0.66 16 39 H 0.10 1.29 7.69 -51.93 -0.40 0.89 16 40 H 0.40 6.54 6.16 -40.82 -0.25 6.28 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.01 0.13 6.72 -51.93 -0.35 -0.22 16 44 H 0.08 2.05 6.23 -51.93 -0.32 1.72 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 2.14 6.10 -51.93 -0.32 1.82 16 48 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 49 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -30.90 388.38 -8.74 -39.64 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.00 Total: 6.60 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.71 Total: -14.81 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.23 Total: -36.88 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.08 Total: -16.35 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.90 -8.74 -39.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457991770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.344 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds