Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46969 * 2 1 4 4 H 1.08998 * 109.47000 * 55.00092 * 3 2 1 5 5 C 1.53002 * 109.46890 * 175.00325 * 3 2 1 6 6 O 1.42902 * 109.46976 * 294.99973 * 3 2 1 7 7 C 1.35713 * 116.99876 * 155.12826 * 6 3 2 8 8 C 1.38992 * 119.90987 * 5.44529 * 7 6 3 9 9 C 1.37709 * 120.08770 * 179.97438 * 8 7 6 10 10 C 1.39729 * 119.90592 * 359.97438 * 9 8 7 11 11 C 1.47604 * 120.08740 * 180.02562 * 10 9 8 12 12 O 1.21594 * 119.99557 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00591 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47108 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46909 * 300.00155 * 15 14 13 17 17 C 1.52996 * 109.46824 * 59.99879 * 15 14 13 18 18 C 1.50694 * 109.47308 * 180.02562 * 15 14 13 19 19 H 1.08003 * 119.99740 * 359.97438 * 18 15 14 20 20 C 1.37873 * 120.00188 * 180.02562 * 18 15 14 21 21 N 1.31521 * 119.99668 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00251 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47156 * 59.99638 * 22 20 18 24 24 H 1.48506 * 109.47127 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47175 * 299.99812 * 22 20 18 26 26 C 1.39735 * 119.82990 * 0.27940 * 10 9 8 27 27 C 1.37703 * 119.90634 * 359.43788 * 26 10 9 28 28 H 1.09001 * 109.46937 * 300.00407 * 1 2 3 29 29 H 1.09002 * 109.46687 * 59.99896 * 1 2 3 30 30 H 1.08997 * 109.46805 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46986 * 240.00074 * 2 1 3 32 32 H 1.08998 * 109.47256 * 119.99635 * 2 1 3 33 33 H 1.08986 * 109.47317 * 59.99679 * 5 3 2 34 34 H 1.08997 * 109.46727 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.46664 * 299.99667 * 5 3 2 36 36 H 1.08000 * 119.95844 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.04306 * 179.97438 * 9 8 7 38 38 H 0.97005 * 119.99430 * 359.97438 * 13 11 10 39 39 H 1.08990 * 109.47456 * 299.99789 * 14 13 11 40 40 H 1.09007 * 109.47475 * 60.00130 * 14 13 11 41 41 H 1.09000 * 109.46801 * 59.99890 * 16 15 14 42 42 H 1.08994 * 109.46773 * 179.97438 * 16 15 14 43 43 H 1.08995 * 109.47209 * 299.99770 * 16 15 14 44 44 H 1.09003 * 109.47066 * 60.00195 * 17 15 14 45 45 H 1.08998 * 109.47205 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47567 * 300.00526 * 17 15 14 47 47 H 0.96997 * 119.99605 * 180.02562 * 21 20 18 48 48 H 1.07996 * 120.04523 * 179.70752 * 26 10 9 49 49 H 1.08002 * 119.95331 * 180.25380 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4444 0.1256 6 8 1.6620 2.0814 -1.2211 7 6 1.5548 3.4342 -1.2012 8 6 1.9181 4.1415 -0.0612 9 6 1.8114 5.5142 -0.0372 10 6 1.3376 6.1959 -1.1611 11 6 1.2222 7.6673 -1.1400 12 8 1.5391 8.2877 -0.1434 13 7 0.7645 8.3231 -2.2248 14 6 0.6494 9.7834 -2.2035 15 6 0.1097 10.2721 -3.5492 16 6 1.0678 9.8523 -4.6658 17 6 -1.2678 9.6556 -3.8005 18 6 -0.0081 11.7743 -3.5276 19 1 0.2734 12.3253 -2.6424 20 6 -0.4762 12.4452 -4.6374 21 7 -0.8194 11.7741 -5.7152 22 14 -0.6229 14.3072 -4.6103 23 1 0.7142 14.9056 -4.3668 24 1 -1.1478 14.7815 -5.9161 25 1 -1.5525 14.7148 -3.5263 26 6 0.9684 5.4807 -2.3034 27 6 1.0836 4.1086 -2.3214 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9994 0.9054 -0.7160 34 1 3.9281 2.4720 0.1261 35 1 3.8532 0.9570 1.0571 36 1 2.2854 3.6139 0.8067 37 1 2.0935 6.0631 0.8491 38 1 0.5113 7.8281 -3.0197 39 1 -0.0328 10.0825 -1.4079 40 1 1.6309 10.2227 -2.0249 41 1 1.1534 8.7657 -4.6816 42 1 0.6831 10.2000 -5.6245 43 1 2.0492 10.2915 -4.4868 44 1 -1.9503 9.9547 -3.0050 45 1 -1.6525 10.0041 -4.7590 46 1 -1.1822 8.5690 -3.8163 47 1 -1.1484 12.2461 -6.4961 48 1 0.5973 6.0037 -3.1724 49 1 0.8023 3.5555 -3.2053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = -68.984278 kcal Electronic energy + Delta-G solvation = -26581.393760 eV Core-core repulsion = 22894.171179 eV Total energy + Delta-G solvation = -3687.222581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.66837 -39.41046 -37.49807 -36.26986 -34.51825 -33.35622 -31.41214 -31.00370 -30.21978 -29.85111 -25.73758 -25.72117 -25.10168 -24.41526 -23.40665 -22.75614 -21.16961 -20.04621 -18.92506 -18.58473 -17.52629 -16.22018 -15.87088 -15.63470 -15.19904 -15.12380 -14.72331 -14.70419 -14.45345 -14.06625 -13.80098 -13.62276 -13.58978 -13.19698 -12.91795 -12.86523 -12.55447 -12.41538 -12.21019 -12.15915 -11.97375 -11.50245 -11.37719 -11.29416 -11.17587 -10.95785 -10.82970 -10.79677 -10.72435 -10.37668 -10.19857 -9.62756 -9.61751 -9.25350 -9.19520 -8.79131 -8.52181 -8.37427 -8.18846 -6.01196 -4.11196 0.91997 1.22652 2.85598 3.08612 3.30983 3.35181 3.38628 3.75256 3.96113 4.22249 4.41090 4.43962 4.54846 4.66465 4.69333 4.86588 5.02838 5.05816 5.14391 5.15360 5.19908 5.25438 5.34162 5.40152 5.50270 5.52976 5.67145 5.72274 5.87182 5.88692 6.07299 6.15561 6.22952 6.34095 6.36749 6.49744 6.54603 6.78934 6.82595 6.95035 7.02775 7.03562 7.18351 7.36171 7.56281 7.70156 8.01642 8.06086 8.16552 8.39286 8.70540 8.89268 9.54427 11.00231 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.002229 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.349132 B =12560.371917 C =12951.602508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.182 4.182 6 O -0.305 6.305 7 C 0.151 3.849 8 C -0.222 4.222 9 C -0.021 4.021 10 C -0.166 4.166 11 C 0.550 3.450 12 O -0.553 6.553 13 N -0.711 5.711 14 C 0.131 3.869 15 C 0.055 3.945 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.505 4.505 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.046 4.046 27 C -0.160 4.160 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.397 0.603 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.005 0.995 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.086 0.914 46 H 0.005 0.995 47 H 0.260 0.740 48 H 0.135 0.865 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.453 -23.537 8.448 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.240 4.240 6 O -0.219 6.219 7 C 0.105 3.895 8 C -0.240 4.240 9 C -0.040 4.040 10 C -0.169 4.169 11 C 0.336 3.664 12 O -0.434 6.434 13 N -0.362 5.362 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.189 4.189 17 C -0.189 4.189 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.064 4.064 27 C -0.179 4.179 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.105 0.895 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.105 0.895 46 H 0.024 0.976 47 H 0.070 0.930 48 H 0.152 0.848 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.562 -23.161 8.786 25.188 hybrid contribution -0.112 0.842 -0.214 0.876 sum 4.450 -22.319 8.572 24.319 Atomic orbital electron populations 1.21775 0.95003 1.01943 1.02544 1.21637 0.96954 0.93768 1.03224 1.22565 0.95177 0.94031 0.86011 0.90621 1.22399 0.95088 1.03438 1.03050 1.86075 1.83295 1.16765 1.35764 1.19211 0.93646 0.82450 0.94202 1.21228 1.09063 0.94990 0.98755 1.21056 0.92602 0.92925 0.97466 1.20039 1.07135 0.93850 0.95867 1.18164 0.77898 0.86681 0.83607 1.90734 1.50786 1.68970 1.32873 1.46246 1.64590 1.09748 1.15589 1.21750 1.00426 0.76244 1.00683 1.18364 0.92132 0.95506 0.88526 1.21836 0.98327 0.95249 1.03473 1.21837 0.98692 0.94956 1.03411 1.20937 1.43482 0.90327 0.99656 0.92470 1.24883 0.95000 0.98261 0.95408 1.69795 1.44088 1.35008 1.03580 0.86624 0.78467 0.85594 0.77108 1.20289 1.21347 1.20295 1.21203 0.94924 0.93184 0.97135 1.20339 1.05763 0.93744 0.98052 0.92742 0.91844 0.92401 0.90724 0.90039 0.91325 0.91527 0.90937 0.84929 0.84476 0.76695 0.92573 0.92575 0.97565 0.89540 0.95375 0.95383 0.89532 0.97557 0.92955 0.84753 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.81 37.16 0.36 -0.62 16 2 C -0.12 -0.69 5.64 -26.72 -0.15 -0.84 16 3 C 0.08 0.57 2.22 -26.73 -0.06 0.51 16 4 H 0.08 0.53 6.30 -51.93 -0.33 0.20 16 5 C -0.18 -1.16 9.16 37.16 0.34 -0.82 16 6 O -0.31 -3.07 9.32 -18.84 -0.18 -3.24 16 7 C 0.15 1.69 6.61 -39.02 -0.26 1.43 16 8 C -0.22 -2.43 8.21 -39.50 -0.32 -2.75 16 9 C -0.02 -0.28 9.58 -39.22 -0.38 -0.66 16 10 C -0.17 -2.45 5.87 -104.96 -0.62 -3.07 16 11 C 0.55 10.10 7.76 -12.44 -0.10 10.00 16 12 O -0.55 -11.96 16.34 5.28 0.09 -11.87 16 13 N -0.71 -13.08 4.91 -61.33 -0.30 -13.38 16 14 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 15 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 16 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 17 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 18 C -0.51 -13.26 8.01 -34.44 -0.28 -13.53 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.59 9.35 55.43 0.52 -23.07 16 22 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.05 -0.57 9.53 -39.22 -0.37 -0.95 16 27 C -0.16 -1.83 9.97 -39.50 -0.39 -2.22 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.45 8.14 -51.94 -0.42 0.02 16 34 H 0.07 0.48 6.89 -51.93 -0.36 0.13 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.13 1.14 5.40 -52.49 -0.28 0.86 16 37 H 0.14 1.80 7.64 -52.49 -0.40 1.40 16 38 H 0.40 6.54 4.19 -40.82 -0.17 6.37 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 48 H 0.13 1.52 6.39 -52.49 -0.34 1.19 16 49 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -29.28 385.52 -8.71 -37.99 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.82 Total: 5.18 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.81 Total: -13.18 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.22 Total: -36.45 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.09 Total: -15.11 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.28 -8.71 -37.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.994 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds