Wall clock time and date at job start Tue Mar 31 2020 12:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46969 * 2 1 4 4 H 1.08998 * 109.47000 * 55.00092 * 3 2 1 5 5 C 1.53002 * 109.46890 * 175.00325 * 3 2 1 6 6 O 1.42902 * 109.46976 * 294.99973 * 3 2 1 7 7 C 1.35713 * 116.99876 * 155.12826 * 6 3 2 8 8 C 1.38992 * 119.90987 * 5.44529 * 7 6 3 9 9 C 1.37709 * 120.08770 * 179.97438 * 8 7 6 10 10 C 1.39729 * 119.90592 * 359.97438 * 9 8 7 11 11 C 1.47604 * 120.08740 * 180.02562 * 10 9 8 12 12 O 1.21594 * 119.99557 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00591 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47108 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46909 * 300.00155 * 15 14 13 17 17 C 1.52996 * 109.46824 * 59.99879 * 15 14 13 18 18 C 1.50694 * 109.47308 * 180.02562 * 15 14 13 19 19 H 1.08003 * 119.99740 * 359.97438 * 18 15 14 20 20 C 1.37873 * 120.00188 * 180.02562 * 18 15 14 21 21 N 1.31521 * 119.99668 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00251 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47156 * 59.99638 * 22 20 18 24 24 H 1.48506 * 109.47127 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47175 * 299.99812 * 22 20 18 26 26 C 1.39735 * 119.82990 * 0.27940 * 10 9 8 27 27 C 1.37703 * 119.90634 * 359.43788 * 26 10 9 28 28 H 1.09001 * 109.46937 * 300.00407 * 1 2 3 29 29 H 1.09002 * 109.46687 * 59.99896 * 1 2 3 30 30 H 1.08997 * 109.46805 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46986 * 240.00074 * 2 1 3 32 32 H 1.08998 * 109.47256 * 119.99635 * 2 1 3 33 33 H 1.08986 * 109.47317 * 59.99679 * 5 3 2 34 34 H 1.08997 * 109.46727 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.46664 * 299.99667 * 5 3 2 36 36 H 1.08000 * 119.95844 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.04306 * 179.97438 * 9 8 7 38 38 H 0.97005 * 119.99430 * 359.97438 * 13 11 10 39 39 H 1.08990 * 109.47456 * 299.99789 * 14 13 11 40 40 H 1.09007 * 109.47475 * 60.00130 * 14 13 11 41 41 H 1.09000 * 109.46801 * 59.99890 * 16 15 14 42 42 H 1.08994 * 109.46773 * 179.97438 * 16 15 14 43 43 H 1.08995 * 109.47209 * 299.99770 * 16 15 14 44 44 H 1.09003 * 109.47066 * 60.00195 * 17 15 14 45 45 H 1.08998 * 109.47205 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47567 * 300.00526 * 17 15 14 47 47 H 0.96997 * 119.99605 * 180.02562 * 21 20 18 48 48 H 1.07996 * 120.04523 * 179.70752 * 26 10 9 49 49 H 1.08002 * 119.95331 * 180.25380 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4444 0.1256 6 8 1.6620 2.0814 -1.2211 7 6 1.5548 3.4342 -1.2012 8 6 1.9181 4.1415 -0.0612 9 6 1.8114 5.5142 -0.0372 10 6 1.3376 6.1959 -1.1611 11 6 1.2222 7.6673 -1.1400 12 8 1.5391 8.2877 -0.1434 13 7 0.7645 8.3231 -2.2248 14 6 0.6494 9.7834 -2.2035 15 6 0.1097 10.2721 -3.5492 16 6 1.0678 9.8523 -4.6658 17 6 -1.2678 9.6556 -3.8005 18 6 -0.0081 11.7743 -3.5276 19 1 0.2734 12.3253 -2.6424 20 6 -0.4762 12.4452 -4.6374 21 7 -0.8194 11.7741 -5.7152 22 14 -0.6229 14.3072 -4.6103 23 1 0.7142 14.9056 -4.3668 24 1 -1.1478 14.7815 -5.9161 25 1 -1.5525 14.7148 -3.5263 26 6 0.9684 5.4807 -2.3034 27 6 1.0836 4.1086 -2.3214 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9994 0.9054 -0.7160 34 1 3.9281 2.4720 0.1261 35 1 3.8532 0.9570 1.0571 36 1 2.2854 3.6139 0.8067 37 1 2.0935 6.0631 0.8491 38 1 0.5113 7.8281 -3.0197 39 1 -0.0328 10.0825 -1.4079 40 1 1.6309 10.2227 -2.0249 41 1 1.1534 8.7657 -4.6816 42 1 0.6831 10.2000 -5.6245 43 1 2.0492 10.2915 -4.4868 44 1 -1.9503 9.9547 -3.0050 45 1 -1.6525 10.0041 -4.7590 46 1 -1.1822 8.5690 -3.8163 47 1 -1.1484 12.2461 -6.4961 48 1 0.5973 6.0037 -3.1724 49 1 0.8023 3.5555 -3.2053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:31 Heat of formation + Delta-G solvation = -83.848948 kcal Electronic energy + Delta-G solvation = -26582.038341 eV Core-core repulsion = 22894.171179 eV Total energy + Delta-G solvation = -3687.867162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59582 -40.68659 -38.60325 -37.93334 -35.17820 -35.02707 -32.92574 -32.12198 -31.06028 -30.74513 -27.56479 -27.49702 -26.86417 -25.16919 -24.17107 -23.85375 -22.00777 -21.22541 -20.62903 -19.55054 -18.77709 -17.75746 -17.21907 -16.64753 -16.54837 -16.30393 -16.13530 -16.00629 -15.38454 -14.96844 -14.82470 -14.71427 -14.63673 -14.45491 -14.27042 -14.04974 -13.84633 -13.51917 -13.26651 -13.15914 -13.07839 -12.81465 -12.68036 -12.62359 -12.60972 -12.24897 -12.12974 -11.99895 -11.98231 -11.60831 -11.48663 -11.46296 -11.31075 -10.94649 -10.70181 -10.39291 -10.12167 -10.01451 -9.24234 -8.01609 -6.17220 -0.12170 0.30155 1.44735 1.45702 1.52401 1.85685 2.14730 2.28673 2.49918 2.83842 3.21814 3.66878 3.76786 3.79881 3.82817 3.97251 4.07987 4.18064 4.30916 4.40830 4.45652 4.50117 4.50720 4.63696 4.69045 4.70700 4.78298 4.94162 4.97805 4.98881 5.05158 5.08053 5.10300 5.13581 5.19299 5.20632 5.23760 5.26066 5.34997 5.36525 5.42313 5.56094 5.62925 5.67203 5.67784 6.15029 6.21183 6.38973 6.43678 6.64046 6.86190 7.26218 7.50106 8.97231 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.002229 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.349132 B =12560.371917 C =12951.602508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.081 0.919 5 C -0.180 4.180 6 O -0.311 6.311 7 C 0.158 3.842 8 C -0.215 4.215 9 C -0.028 4.028 10 C -0.190 4.190 11 C 0.550 3.450 12 O -0.593 6.593 13 N -0.705 5.705 14 C 0.147 3.853 15 C 0.051 3.949 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.529 4.529 19 H 0.044 0.956 20 C 0.028 3.972 21 N -0.898 5.898 22 Si 0.946 3.054 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.277 1.277 26 C -0.042 4.042 27 C -0.163 4.163 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.131 0.869 38 H 0.407 0.593 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.261 0.739 48 H 0.146 0.854 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.716 -26.054 8.638 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C 0.014 3.986 4 H 0.099 0.901 5 C -0.238 4.238 6 O -0.224 6.224 7 C 0.111 3.889 8 C -0.233 4.233 9 C -0.047 4.047 10 C -0.193 4.193 11 C 0.339 3.661 12 O -0.476 6.476 13 N -0.357 5.357 14 C 0.023 3.977 15 C 0.050 3.950 16 C -0.179 4.179 17 C -0.180 4.180 18 C -0.567 4.567 19 H 0.063 0.937 20 C -0.172 4.172 21 N -0.537 5.537 22 Si 0.772 3.228 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.203 1.203 26 C -0.060 4.060 27 C -0.181 4.181 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.174 0.826 37 H 0.149 0.851 38 H 0.246 0.754 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.070 0.930 48 H 0.164 0.836 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.822 -25.711 8.960 27.651 hybrid contribution -0.171 1.463 -0.228 1.490 sum 4.651 -24.249 8.732 26.189 Atomic orbital electron populations 1.21784 0.95493 1.02392 1.01725 1.21672 0.96466 0.92853 1.04262 1.22872 0.95985 0.94690 0.85087 0.90070 1.22396 0.94164 1.03069 1.04139 1.86095 1.82937 1.15951 1.37429 1.19358 0.92325 0.83166 0.94003 1.21389 1.08296 0.93979 0.99644 1.21098 0.92766 0.93900 0.96908 1.19796 1.10297 0.91487 0.97747 1.18707 0.76542 0.88212 0.82611 1.90704 1.52504 1.70204 1.34225 1.46043 1.64911 1.08339 1.16362 1.21325 0.98923 0.78228 0.99220 1.18367 0.92873 0.94253 0.89487 1.21683 0.97319 0.97121 1.01815 1.21685 0.97766 0.96809 1.01692 1.21223 1.43882 0.92198 0.99408 0.93725 1.25459 0.94905 1.01602 0.95260 1.69897 1.44123 1.35978 1.03700 0.85811 0.78215 0.81636 0.77098 1.20293 1.20784 1.20300 1.21287 0.94406 0.93730 0.96615 1.20566 1.05302 0.93321 0.98922 0.92667 0.93518 0.91401 0.90828 0.87837 0.91530 0.92483 0.88823 0.82555 0.85070 0.75428 0.94175 0.94190 0.94494 0.91687 0.96284 0.96283 0.91680 0.94477 0.92993 0.83614 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.81 71.98 0.71 -0.94 16 2 C -0.12 -1.02 5.64 30.60 0.17 -0.85 16 3 C 0.07 0.82 2.22 30.60 0.07 0.89 16 4 H 0.08 0.89 6.30 -2.39 -0.02 0.87 16 5 C -0.18 -1.80 9.16 71.98 0.66 -1.14 16 6 O -0.31 -5.46 9.32 -90.35 -0.84 -6.30 16 7 C 0.16 3.17 6.61 22.63 0.15 3.32 16 8 C -0.21 -4.28 8.21 22.33 0.18 -4.10 16 9 C -0.03 -0.71 9.58 22.51 0.22 -0.49 16 10 C -0.19 -5.49 5.87 -20.08 -0.12 -5.61 16 11 C 0.55 20.30 7.76 86.72 0.67 20.98 16 12 O -0.59 -26.30 16.34 -4.01 -0.07 -26.36 16 13 N -0.71 -25.73 4.91 -466.19 -2.29 -28.02 16 14 C 0.15 6.44 4.50 86.38 0.39 6.83 16 15 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 16 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 17 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 18 C -0.53 -28.19 8.01 25.60 0.21 -27.98 16 19 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 20 C 0.03 1.46 5.15 84.65 0.44 1.90 16 21 N -0.90 -47.98 9.35 21.45 0.20 -47.77 16 22 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 C -0.04 -0.97 9.53 22.51 0.21 -0.76 16 27 C -0.16 -3.31 9.97 22.32 0.22 -3.09 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.64 7.82 -2.39 -0.02 0.62 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.69 6.89 -2.39 -0.02 0.67 16 35 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.16 2.28 5.40 -2.91 -0.02 2.27 16 37 H 0.13 3.46 7.64 -2.91 -0.02 3.44 16 38 H 0.41 12.85 4.19 -92.70 -0.39 12.46 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 42 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 46 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 47 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 48 H 0.15 2.97 6.39 -2.91 -0.02 2.95 16 49 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -63.51 385.52 4.90 -58.61 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.55 Total: 23.39 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.31 Total: -18.43 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -2.09 Total: -75.79 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.91 Total: -32.66 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -63.51 4.90 -58.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.238 kcal (2) G-P(sol) polarization free energy of solvation -63.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds