Wall clock time and date at job start Tue Mar 31 2020 12:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47108 * 2 1 4 4 H 1.08996 * 109.47148 * 305.00119 * 3 2 1 5 5 C 1.53002 * 109.47300 * 184.99820 * 3 2 1 6 6 O 1.42903 * 109.47410 * 64.99959 * 3 2 1 7 7 C 1.35708 * 117.00551 * 204.71326 * 6 3 2 8 8 C 1.39004 * 119.90693 * 354.63527 * 7 6 3 9 9 C 1.37701 * 120.08728 * 180.02562 * 8 7 6 10 10 C 1.39736 * 119.90615 * 0.22401 * 9 8 7 11 11 C 1.47609 * 120.08415 * 179.74664 * 10 9 8 12 12 O 1.21587 * 119.99947 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00167 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00045 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47098 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47061 * 300.00151 * 15 14 13 17 17 C 1.53006 * 109.47064 * 59.99883 * 15 14 13 18 18 C 1.50693 * 109.47132 * 180.02562 * 15 14 13 19 19 H 1.07997 * 120.00228 * 359.97438 * 18 15 14 20 20 C 1.37877 * 119.99839 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00495 * 0.02562 * 20 18 15 22 22 Si 1.86807 * 120.00003 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46822 * 59.99823 * 22 20 18 24 24 H 1.48496 * 109.47355 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47026 * 300.00509 * 22 20 18 26 26 C 1.39733 * 119.83127 * 359.49910 * 10 9 8 27 27 C 1.37709 * 119.90509 * 0.52516 * 26 10 9 28 28 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46805 * 300.00151 * 1 2 3 30 30 H 1.08996 * 109.46759 * 59.99847 * 1 2 3 31 31 H 1.09002 * 109.46805 * 239.99849 * 2 1 3 32 32 H 1.08996 * 109.46759 * 120.00153 * 2 1 3 33 33 H 1.08997 * 109.47495 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47005 * 300.00221 * 5 3 2 35 35 H 1.09007 * 109.46426 * 59.99800 * 5 3 2 36 36 H 1.08002 * 119.95666 * 359.97403 * 8 7 6 37 37 H 1.07997 * 120.04715 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99438 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.46851 * 300.00184 * 14 13 11 40 40 H 1.08999 * 109.46868 * 60.00054 * 14 13 11 41 41 H 1.09000 * 109.47046 * 60.00041 * 16 15 14 42 42 H 1.09006 * 109.47054 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.46869 * 299.99776 * 16 15 14 44 44 H 1.09004 * 109.46901 * 59.99882 * 17 15 14 45 45 H 1.08999 * 109.46981 * 179.97438 * 17 15 14 46 46 H 1.09002 * 109.47018 * 299.99883 * 17 15 14 47 47 H 0.96994 * 120.00609 * 180.02562 * 21 20 18 48 48 H 1.07997 * 120.04836 * 180.24962 * 26 10 9 49 49 H 1.08000 * 119.95304 * 179.69934 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 8 1.6620 2.0814 1.2210 7 6 1.5582 3.4344 1.2021 8 6 1.9230 4.1416 0.0623 9 6 1.8196 5.5145 0.0392 10 6 1.3516 6.1970 1.1652 11 6 1.2445 7.6691 1.1466 12 8 1.5633 8.2893 0.1506 13 7 0.7924 8.3256 2.2334 14 6 0.6856 9.7866 2.2147 15 6 0.1510 10.2761 3.5621 16 6 -1.2296 9.6669 3.8148 17 6 1.1086 9.8489 4.6764 18 6 0.0405 11.7788 3.5428 19 1 0.3236 12.3298 2.6581 20 6 -0.4221 12.4504 4.6545 21 7 -0.7665 11.7797 5.7320 22 14 -0.5584 14.3134 4.6308 23 1 -1.4873 14.7279 3.5488 24 1 -1.0774 14.7885 5.9385 25 1 0.7816 14.9046 4.3862 26 6 0.9804 5.4820 2.3069 27 6 1.0872 4.1092 2.3222 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9282 2.4720 -0.1261 34 1 3.9995 0.9053 0.7162 35 1 3.8532 0.9569 -1.0571 36 1 2.2889 3.6136 -0.8059 37 1 2.1037 6.0633 -0.8465 38 1 0.5378 7.8307 3.0278 39 1 1.6692 10.2205 2.0352 40 1 0.0037 10.0909 1.4207 41 1 -1.1501 8.5799 3.8287 42 1 -1.6103 10.0153 4.7750 43 1 -1.9118 9.9713 3.0210 44 1 2.0922 10.2828 4.4964 45 1 0.7279 10.1980 5.6363 46 1 1.1880 8.7618 4.6902 47 1 -1.0923 12.2521 6.5140 48 1 0.6144 6.0056 3.1776 49 1 0.8051 3.5562 3.2059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:35 Heat of formation + Delta-G solvation = -68.984529 kcal Electronic energy + Delta-G solvation = -26581.180090 eV Core-core repulsion = 22893.957498 eV Total energy + Delta-G solvation = -3687.222592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.66848 -39.41105 -37.49786 -36.27013 -34.51891 -33.35665 -31.41290 -31.00417 -30.21858 -29.85103 -25.73742 -25.72044 -25.10194 -24.41480 -23.40712 -22.75516 -21.17017 -20.04621 -18.92474 -18.58402 -17.52635 -16.22124 -15.87104 -15.63471 -15.19964 -15.12293 -14.72328 -14.70433 -14.45354 -14.06600 -13.80191 -13.62296 -13.58943 -13.19685 -12.91746 -12.86533 -12.55403 -12.41451 -12.21016 -12.15897 -11.97423 -11.50245 -11.37708 -11.29358 -11.17599 -10.95847 -10.82975 -10.79669 -10.72452 -10.37642 -10.19880 -9.62727 -9.61745 -9.25368 -9.19506 -8.79137 -8.52175 -8.37465 -8.18821 -6.01152 -4.11190 0.92014 1.22677 2.85610 3.08609 3.30984 3.35204 3.38631 3.75276 3.96131 4.22249 4.41084 4.43942 4.54858 4.66451 4.69334 4.86578 5.02826 5.05821 5.14373 5.15366 5.19925 5.25466 5.34178 5.40140 5.50282 5.52954 5.67136 5.72252 5.87201 5.88680 6.07314 6.15592 6.22986 6.34090 6.36774 6.49751 6.54614 6.78942 6.82608 6.95043 7.02773 7.03566 7.18379 7.36160 7.56273 7.70146 8.01615 8.06109 8.16554 8.39293 8.70573 8.89291 9.54446 11.00267 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032049 B = 0.002228 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.448321 B =12562.605223 C =12954.086998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.183 4.183 6 O -0.305 6.305 7 C 0.151 3.849 8 C -0.222 4.222 9 C -0.021 4.021 10 C -0.166 4.166 11 C 0.550 3.450 12 O -0.553 6.553 13 N -0.711 5.711 14 C 0.131 3.869 15 C 0.055 3.945 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.046 4.046 27 C -0.160 4.160 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.397 0.603 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.005 0.995 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.086 0.914 46 H 0.005 0.995 47 H 0.260 0.740 48 H 0.135 0.865 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -23.549 -8.484 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.240 4.240 6 O -0.219 6.219 7 C 0.105 3.895 8 C -0.240 4.240 9 C -0.041 4.041 10 C -0.169 4.169 11 C 0.337 3.663 12 O -0.434 6.434 13 N -0.362 5.362 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.189 4.189 17 C -0.189 4.189 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.064 4.064 27 C -0.179 4.179 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.105 0.895 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.105 0.895 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.152 0.848 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.448 -23.174 -8.821 25.191 hybrid contribution -0.106 0.843 0.216 0.877 sum 4.343 -22.330 -8.605 24.322 Atomic orbital electron populations 1.21774 0.95002 1.01944 1.02544 1.21635 0.96955 0.93765 1.03226 1.22561 0.95176 0.94030 0.86008 0.90627 1.22404 0.95090 1.03442 1.03051 1.86073 1.83295 1.16740 1.35792 1.19212 0.93639 0.82444 0.94213 1.21231 1.09063 0.94992 0.98750 1.21055 0.92613 0.92924 0.97460 1.20042 1.07175 0.93837 0.95840 1.18163 0.77894 0.86687 0.83605 1.90732 1.50659 1.69006 1.32962 1.46247 1.64725 1.09691 1.15514 1.21750 1.00450 0.76218 1.00681 1.18363 0.92146 0.95509 0.88511 1.21839 0.98671 0.94962 1.03419 1.21839 0.98323 0.95241 1.03489 1.20936 1.43602 0.90278 0.99597 0.92469 1.24880 0.94994 0.98255 0.95403 1.69785 1.44138 1.35015 1.03530 0.86627 0.78468 0.85615 0.77104 1.20287 1.21347 1.20294 1.21204 0.94910 0.93181 0.97149 1.20339 1.05780 0.93728 0.98054 0.92401 0.91843 0.92742 0.90037 0.90723 0.91522 0.91324 0.90937 0.84928 0.84476 0.76697 0.92577 0.92570 0.97568 0.89535 0.95375 0.95382 0.89539 0.97554 0.92948 0.84753 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.81 37.16 0.36 -0.62 16 2 C -0.12 -0.69 5.64 -26.73 -0.15 -0.84 16 3 C 0.08 0.57 2.22 -26.73 -0.06 0.51 16 4 H 0.08 0.53 6.31 -51.93 -0.33 0.20 16 5 C -0.18 -1.16 9.16 37.16 0.34 -0.82 16 6 O -0.31 -3.07 9.32 -18.83 -0.18 -3.24 16 7 C 0.15 1.69 6.61 -39.02 -0.26 1.43 16 8 C -0.22 -2.43 8.21 -39.49 -0.32 -2.75 16 9 C -0.02 -0.28 9.58 -39.22 -0.38 -0.66 16 10 C -0.17 -2.45 5.88 -104.96 -0.62 -3.07 16 11 C 0.55 10.10 7.76 -12.44 -0.10 10.00 16 12 O -0.55 -11.95 16.34 5.29 0.09 -11.87 16 13 N -0.71 -13.08 4.91 -61.32 -0.30 -13.38 16 14 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 15 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 16 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 17 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 18 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.58 9.35 55.43 0.52 -23.07 16 22 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.05 -0.57 9.53 -39.22 -0.37 -0.95 16 27 C -0.16 -1.83 9.97 -39.50 -0.39 -2.22 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.48 6.88 -51.93 -0.36 0.13 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.13 1.14 5.40 -52.49 -0.28 0.86 16 37 H 0.14 1.80 7.64 -52.49 -0.40 1.40 16 38 H 0.40 6.54 4.18 -40.82 -0.17 6.37 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 48 H 0.13 1.52 6.39 -52.49 -0.34 1.19 16 49 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -29.28 385.50 -8.71 -37.99 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.82 Total: 5.18 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.81 Total: -13.18 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.22 Total: -36.45 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.09 Total: -15.11 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.28 -8.71 -37.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.996 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds