Wall clock time and date at job start Tue Mar 31 2020 12:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47108 * 2 1 4 4 H 1.08996 * 109.47148 * 305.00119 * 3 2 1 5 5 C 1.53002 * 109.47300 * 184.99820 * 3 2 1 6 6 O 1.42903 * 109.47410 * 64.99959 * 3 2 1 7 7 C 1.35708 * 117.00551 * 204.71326 * 6 3 2 8 8 C 1.39004 * 119.90693 * 354.63527 * 7 6 3 9 9 C 1.37701 * 120.08728 * 180.02562 * 8 7 6 10 10 C 1.39736 * 119.90615 * 0.22401 * 9 8 7 11 11 C 1.47609 * 120.08415 * 179.74664 * 10 9 8 12 12 O 1.21587 * 119.99947 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00167 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00045 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47098 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47061 * 300.00151 * 15 14 13 17 17 C 1.53006 * 109.47064 * 59.99883 * 15 14 13 18 18 C 1.50693 * 109.47132 * 180.02562 * 15 14 13 19 19 H 1.07997 * 120.00228 * 359.97438 * 18 15 14 20 20 C 1.37877 * 119.99839 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00495 * 0.02562 * 20 18 15 22 22 Si 1.86807 * 120.00003 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46822 * 59.99823 * 22 20 18 24 24 H 1.48496 * 109.47355 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47026 * 300.00509 * 22 20 18 26 26 C 1.39733 * 119.83127 * 359.49910 * 10 9 8 27 27 C 1.37709 * 119.90509 * 0.52516 * 26 10 9 28 28 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46805 * 300.00151 * 1 2 3 30 30 H 1.08996 * 109.46759 * 59.99847 * 1 2 3 31 31 H 1.09002 * 109.46805 * 239.99849 * 2 1 3 32 32 H 1.08996 * 109.46759 * 120.00153 * 2 1 3 33 33 H 1.08997 * 109.47495 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47005 * 300.00221 * 5 3 2 35 35 H 1.09007 * 109.46426 * 59.99800 * 5 3 2 36 36 H 1.08002 * 119.95666 * 359.97403 * 8 7 6 37 37 H 1.07997 * 120.04715 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99438 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.46851 * 300.00184 * 14 13 11 40 40 H 1.08999 * 109.46868 * 60.00054 * 14 13 11 41 41 H 1.09000 * 109.47046 * 60.00041 * 16 15 14 42 42 H 1.09006 * 109.47054 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.46869 * 299.99776 * 16 15 14 44 44 H 1.09004 * 109.46901 * 59.99882 * 17 15 14 45 45 H 1.08999 * 109.46981 * 179.97438 * 17 15 14 46 46 H 1.09002 * 109.47018 * 299.99883 * 17 15 14 47 47 H 0.96994 * 120.00609 * 180.02562 * 21 20 18 48 48 H 1.07997 * 120.04836 * 180.24962 * 26 10 9 49 49 H 1.08000 * 119.95304 * 179.69934 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 8 1.6620 2.0814 1.2210 7 6 1.5582 3.4344 1.2021 8 6 1.9230 4.1416 0.0623 9 6 1.8196 5.5145 0.0392 10 6 1.3516 6.1970 1.1652 11 6 1.2445 7.6691 1.1466 12 8 1.5633 8.2893 0.1506 13 7 0.7924 8.3256 2.2334 14 6 0.6856 9.7866 2.2147 15 6 0.1510 10.2761 3.5621 16 6 -1.2296 9.6669 3.8148 17 6 1.1086 9.8489 4.6764 18 6 0.0405 11.7788 3.5428 19 1 0.3236 12.3298 2.6581 20 6 -0.4221 12.4504 4.6545 21 7 -0.7665 11.7797 5.7320 22 14 -0.5584 14.3134 4.6308 23 1 -1.4873 14.7279 3.5488 24 1 -1.0774 14.7885 5.9385 25 1 0.7816 14.9046 4.3862 26 6 0.9804 5.4820 2.3069 27 6 1.0872 4.1092 2.3222 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9282 2.4720 -0.1261 34 1 3.9995 0.9053 0.7162 35 1 3.8532 0.9569 -1.0571 36 1 2.2889 3.6136 -0.8059 37 1 2.1037 6.0633 -0.8465 38 1 0.5378 7.8307 3.0278 39 1 1.6692 10.2205 2.0352 40 1 0.0037 10.0909 1.4207 41 1 -1.1501 8.5799 3.8287 42 1 -1.6103 10.0153 4.7750 43 1 -1.9118 9.9713 3.0210 44 1 2.0922 10.2828 4.4964 45 1 0.7279 10.1980 5.6363 46 1 1.1880 8.7618 4.6902 47 1 -1.0923 12.2521 6.5140 48 1 0.6144 6.0056 3.1776 49 1 0.8051 3.5562 3.2059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:34 Heat of formation + Delta-G solvation = -83.847181 kcal Electronic energy + Delta-G solvation = -26581.824583 eV Core-core repulsion = 22893.957498 eV Total energy + Delta-G solvation = -3687.867085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.59593 -40.68731 -38.60291 -37.93371 -35.17875 -35.02761 -32.92669 -32.12235 -31.05906 -30.74491 -27.56401 -27.49684 -26.86427 -25.16898 -24.17170 -23.85249 -22.00812 -21.22555 -20.62887 -19.54978 -18.77702 -17.75771 -17.21952 -16.64787 -16.54914 -16.30421 -16.13541 -16.00561 -15.38421 -14.96842 -14.82462 -14.71422 -14.63686 -14.45489 -14.27114 -14.04974 -13.84615 -13.51924 -13.26556 -13.15845 -13.07834 -12.81537 -12.68025 -12.62369 -12.60960 -12.24872 -12.12998 -11.99844 -11.98165 -11.60901 -11.48632 -11.46318 -11.31086 -10.94650 -10.70181 -10.39345 -10.12161 -10.01445 -9.24191 -8.01559 -6.17207 -0.12153 0.30172 1.44720 1.45708 1.52394 1.85739 2.14696 2.28684 2.49911 2.83840 3.21843 3.66878 3.76793 3.79879 3.82807 3.97242 4.07994 4.18076 4.30946 4.40861 4.45679 4.50125 4.50715 4.63683 4.69020 4.70704 4.78272 4.94167 4.97814 4.98888 5.05175 5.08067 5.10314 5.13595 5.19298 5.20619 5.23774 5.26030 5.35007 5.36533 5.42336 5.56094 5.62934 5.67198 5.67781 6.15009 6.21178 6.38993 6.43680 6.64081 6.86215 7.26252 7.50129 8.97273 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032049 B = 0.002228 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.448321 B =12562.605223 C =12954.086998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.081 0.919 5 C -0.181 4.181 6 O -0.311 6.311 7 C 0.158 3.842 8 C -0.215 4.215 9 C -0.028 4.028 10 C -0.190 4.190 11 C 0.550 3.450 12 O -0.593 6.593 13 N -0.705 5.705 14 C 0.147 3.853 15 C 0.051 3.949 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.529 4.529 19 H 0.044 0.956 20 C 0.028 3.972 21 N -0.898 5.898 22 Si 0.945 3.055 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.277 1.277 26 C -0.042 4.042 27 C -0.163 4.163 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.131 0.869 38 H 0.407 0.593 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.261 0.739 48 H 0.146 0.854 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 -26.068 -8.677 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C 0.014 3.986 4 H 0.099 0.901 5 C -0.238 4.238 6 O -0.224 6.224 7 C 0.112 3.888 8 C -0.233 4.233 9 C -0.047 4.047 10 C -0.193 4.193 11 C 0.339 3.661 12 O -0.476 6.476 13 N -0.357 5.357 14 C 0.023 3.977 15 C 0.050 3.950 16 C -0.179 4.179 17 C -0.179 4.179 18 C -0.567 4.567 19 H 0.063 0.937 20 C -0.172 4.172 21 N -0.537 5.537 22 Si 0.772 3.228 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.203 1.203 26 C -0.060 4.060 27 C -0.181 4.181 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.174 0.826 37 H 0.149 0.851 38 H 0.246 0.754 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.070 0.930 48 H 0.164 0.836 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.697 -25.725 -8.998 27.655 hybrid contribution -0.162 1.464 0.231 1.491 sum 4.535 -24.261 -8.767 26.192 Atomic orbital electron populations 1.21784 0.95489 1.02393 1.01726 1.21670 0.96468 0.92848 1.04263 1.22869 0.95981 0.94691 0.85084 0.90073 1.22401 0.94170 1.03071 1.04140 1.86093 1.82937 1.15926 1.37458 1.19359 0.92320 0.83160 0.94011 1.21392 1.08292 0.93982 0.99640 1.21097 0.92778 0.93899 0.96901 1.19799 1.10345 0.91469 0.97717 1.18706 0.76535 0.88221 0.82610 1.90702 1.52380 1.70239 1.34310 1.46044 1.65048 1.08280 1.16288 1.21326 0.98944 0.78206 0.99218 1.18366 0.92887 0.94253 0.89472 1.21686 0.97745 0.96817 1.01699 1.21686 0.97315 0.97114 1.01829 1.21222 1.44000 0.92150 0.99350 0.93724 1.25455 0.94898 1.01598 0.95255 1.69888 1.44172 1.35985 1.03649 0.85814 0.78215 0.81653 0.77098 1.20286 1.20783 1.20308 1.21288 0.94385 0.93729 0.96633 1.20566 1.05322 0.93306 0.98923 0.91401 0.93517 0.92665 0.87834 0.90829 0.92481 0.91531 0.88822 0.82554 0.85072 0.75430 0.94192 0.94173 0.94490 0.91681 0.96274 0.96291 0.91686 0.94482 0.92986 0.83613 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.81 71.99 0.71 -0.94 16 2 C -0.12 -1.02 5.64 30.60 0.17 -0.85 16 3 C 0.07 0.82 2.22 30.59 0.07 0.89 16 4 H 0.08 0.89 6.31 -2.39 -0.02 0.87 16 5 C -0.18 -1.80 9.16 71.98 0.66 -1.14 16 6 O -0.31 -5.46 9.32 -90.28 -0.84 -6.30 16 7 C 0.16 3.17 6.61 22.63 0.15 3.32 16 8 C -0.21 -4.28 8.21 22.33 0.18 -4.10 16 9 C -0.03 -0.71 9.58 22.50 0.22 -0.49 16 10 C -0.19 -5.49 5.88 -20.08 -0.12 -5.61 16 11 C 0.55 20.30 7.76 86.72 0.67 20.98 16 12 O -0.59 -26.30 16.34 -3.99 -0.07 -26.36 16 13 N -0.71 -25.73 4.91 -466.19 -2.29 -28.02 16 14 C 0.15 6.44 4.50 86.38 0.39 6.83 16 15 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 16 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 17 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 18 C -0.53 -28.20 8.01 25.60 0.21 -27.99 16 19 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 20 C 0.03 1.47 5.15 84.66 0.44 1.91 16 21 N -0.90 -47.97 9.35 21.45 0.20 -47.77 16 22 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 C -0.04 -0.97 9.53 22.51 0.21 -0.76 16 27 C -0.16 -3.31 9.97 22.32 0.22 -3.09 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.64 7.82 -2.39 -0.02 0.62 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.69 6.88 -2.39 -0.02 0.67 16 34 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.16 2.29 5.40 -2.91 -0.02 2.27 16 37 H 0.13 3.46 7.64 -2.91 -0.02 3.44 16 38 H 0.41 12.85 4.18 -92.71 -0.39 12.46 16 39 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 42 H 0.06 3.22 6.07 -2.38 -0.01 3.20 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 46 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 47 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 48 H 0.15 2.97 6.39 -2.91 -0.02 2.95 16 49 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -63.50 385.50 4.90 -58.61 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.55 Total: 23.39 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.31 Total: -18.42 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -2.09 Total: -75.79 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.91 Total: -32.66 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.50 4.90 -58.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.241 kcal (2) G-P(sol) polarization free energy of solvation -63.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds