Wall clock time and date at job start Tue Mar 31 2020 12:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47238 * 2 1 4 4 H 1.09002 * 109.46473 * 304.99295 * 3 2 1 5 5 O 1.42894 * 109.47172 * 64.99526 * 3 2 1 6 6 C 1.35900 * 116.99898 * 260.63693 * 5 3 2 7 7 C 1.38749 * 120.05481 * 5.60613 * 6 5 3 8 8 C 1.38125 * 119.94696 * 179.97438 * 7 6 5 9 9 C 1.38292 * 120.05356 * 359.97438 * 8 7 6 10 10 C 1.38244 * 120.11007 * 0.04469 * 9 8 7 11 11 C 1.50701 * 119.96952 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05417 * 359.67763 * 10 9 8 13 13 C 1.50697 * 109.47096 * 184.99724 * 3 2 1 14 14 O 1.21280 * 119.99816 * 244.99601 * 13 3 2 15 15 N 1.34777 * 120.00456 * 64.99470 * 13 3 2 16 16 C 1.46493 * 120.00361 * 179.72406 * 15 13 3 17 17 C 1.53007 * 109.47334 * 180.27878 * 16 15 13 18 18 C 1.53001 * 109.46706 * 300.00011 * 17 16 15 19 19 C 1.52995 * 109.47052 * 59.99906 * 17 16 15 20 20 C 1.50699 * 109.47042 * 179.97438 * 17 16 15 21 21 H 1.07996 * 120.00453 * 0.02562 * 20 17 16 22 22 C 1.37882 * 119.99844 * 179.97438 * 20 17 16 23 23 N 1.31511 * 119.99606 * 0.02562 * 22 20 17 24 24 Si 1.86798 * 119.99939 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47276 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47303 * 120.00207 * 24 22 20 27 27 H 1.48500 * 109.46795 * 239.99952 * 24 22 20 28 28 H 1.09004 * 109.46594 * 60.00708 * 1 2 3 29 29 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47601 * 300.00487 * 1 2 3 31 31 H 1.08997 * 109.47601 * 239.99513 * 2 1 3 32 32 H 1.09004 * 109.47055 * 119.99559 * 2 1 3 33 33 H 1.07997 * 120.02995 * 0.02562 * 7 6 5 34 34 H 1.07993 * 119.97802 * 179.97438 * 8 7 6 35 35 H 1.07996 * 119.94519 * 180.02562 * 9 8 7 36 36 H 1.09005 * 109.46733 * 90.00476 * 11 10 9 37 37 H 1.09007 * 109.46705 * 209.99465 * 11 10 9 38 38 H 1.08995 * 109.47506 * 329.99965 * 11 10 9 39 39 H 1.08001 * 120.02299 * 180.29766 * 12 10 9 40 40 H 0.97004 * 119.99395 * 0.02562 * 15 13 3 41 41 H 1.09004 * 109.47179 * 300.27837 * 16 15 13 42 42 H 1.09003 * 109.47140 * 60.27703 * 16 15 13 43 43 H 1.08994 * 109.47162 * 60.00247 * 18 17 16 44 44 H 1.08999 * 109.46566 * 179.97438 * 18 17 16 45 45 H 1.09003 * 109.47169 * 299.99808 * 18 17 16 46 46 H 1.08999 * 109.47527 * 60.00316 * 19 17 16 47 47 H 1.09006 * 109.47348 * 180.02562 * 19 17 16 48 48 H 1.09003 * 109.47318 * 300.00389 * 19 17 16 49 49 H 0.97007 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 8 1.6619 2.0814 1.2209 6 6 0.5659 2.8841 1.1836 7 6 -0.1988 2.9627 0.0285 8 6 -1.3126 3.7788 -0.0069 9 6 -1.6661 4.5168 1.1080 10 6 -0.9056 4.4405 2.2599 11 6 -1.2935 5.2465 3.4728 12 6 0.2061 3.6212 2.3021 13 6 3.5419 1.4443 -0.1238 14 8 4.2249 1.8611 0.7876 15 7 4.1261 0.9826 -1.2472 16 6 5.5859 0.9900 -1.3699 17 6 5.9859 0.4242 -2.7341 18 6 5.4706 -1.0107 -2.8620 19 6 5.3767 1.2857 -3.8420 20 6 7.4876 0.4324 -2.8605 21 1 8.0959 0.8035 -2.0489 22 6 8.0850 -0.0350 -4.0119 23 7 7.3443 -0.4873 -4.9999 24 14 9.9464 -0.0255 -4.1683 25 1 10.5447 0.5296 -2.9277 26 1 10.4329 -1.4133 -4.3751 27 1 10.3415 0.8152 -5.3269 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.0762 2.3857 -0.8420 34 1 -1.9078 3.8407 -0.9058 35 1 -2.5376 5.1540 1.0785 36 1 -1.9683 4.6611 4.0974 37 1 -0.3990 5.4993 4.0422 38 1 -1.7935 6.1618 3.1561 39 1 0.7971 3.5583 3.2039 40 1 3.5797 0.6496 -1.9762 41 1 5.9531 2.0122 -1.2786 42 1 6.0200 0.3762 -0.5805 43 1 4.3844 -1.0161 -2.7708 44 1 5.7552 -1.4135 -3.8340 45 1 5.9046 -1.6244 -2.0727 46 1 5.7438 2.3079 -3.7508 47 1 5.6613 0.8824 -4.8139 48 1 4.2905 1.2803 -3.7507 49 1 7.7646 -0.8158 -5.8102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457995867.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:56 Heat of formation + Delta-G solvation = -78.326691 kcal Electronic energy + Delta-G solvation = -27185.806604 eV Core-core repulsion = 23498.178905 eV Total energy + Delta-G solvation = -3687.627699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.83556 -40.50879 -38.76313 -37.97656 -35.34201 -34.54226 -33.42587 -32.67976 -31.17686 -28.92997 -27.86608 -27.56122 -27.38436 -26.29462 -23.55203 -23.45208 -22.54102 -21.03110 -20.63427 -19.27584 -18.61550 -17.78516 -17.07740 -16.97492 -16.74344 -16.53365 -16.22404 -15.92429 -15.46975 -15.01896 -14.81497 -14.75238 -14.65016 -14.34548 -14.13601 -14.02319 -13.73514 -13.35413 -13.22886 -13.11865 -13.00812 -12.91517 -12.72835 -12.65701 -12.58998 -12.47499 -12.25941 -12.14442 -12.07969 -11.85737 -11.49651 -11.48251 -11.28045 -10.81819 -10.67242 -10.40967 -10.04462 -9.72622 -9.11226 -8.03502 -6.18670 0.37533 0.49063 1.40359 1.44878 1.47693 1.53650 1.66225 2.43582 2.60821 2.81210 3.20332 3.50913 3.62337 3.73131 3.92783 3.95239 4.15924 4.22866 4.35798 4.39703 4.44107 4.47379 4.48135 4.57099 4.70057 4.72886 4.84068 4.88670 4.96473 4.98223 5.01950 5.05524 5.08272 5.09864 5.19005 5.25480 5.29930 5.31161 5.40176 5.51092 5.53314 5.66677 5.67227 5.67463 5.86654 6.15590 6.20680 6.37212 6.42891 6.57536 6.85095 7.17761 7.48985 8.95507 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025632 B = 0.002521 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.143488 B =11102.116213 C =11360.861455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.073 3.927 4 H 0.125 0.875 5 O -0.309 6.309 6 C 0.112 3.888 7 C -0.223 4.223 8 C -0.076 4.076 9 C -0.163 4.163 10 C -0.054 4.054 11 C -0.114 4.114 12 C -0.177 4.177 13 C 0.502 3.498 14 O -0.579 6.579 15 N -0.699 5.699 16 C 0.148 3.852 17 C 0.052 3.948 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.528 4.528 21 H 0.042 0.958 22 C 0.030 3.970 23 N -0.897 5.897 24 Si 0.943 3.057 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.412 0.588 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.064 0.936 48 H 0.040 0.960 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.835 5.651 7.810 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.013 3.987 4 H 0.143 0.857 5 O -0.223 6.223 6 C 0.068 3.932 7 C -0.241 4.241 8 C -0.094 4.094 9 C -0.181 4.181 10 C -0.054 4.054 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.288 3.712 14 O -0.459 6.459 15 N -0.353 5.353 16 C 0.024 3.976 17 C 0.052 3.948 18 C -0.180 4.180 19 C -0.181 4.181 20 C -0.567 4.567 21 H 0.060 0.940 22 C -0.170 4.170 23 N -0.536 5.536 24 Si 0.770 3.230 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.250 0.750 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.083 0.917 48 H 0.059 0.941 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.185 5.816 8.436 24.437 hybrid contribution 1.543 -0.290 -0.479 1.642 sum -20.642 5.526 7.956 22.802 Atomic orbital electron populations 1.21884 0.92720 1.03429 1.02484 1.21997 0.98668 0.92076 1.04432 1.22461 0.90535 0.97096 0.88601 0.85736 1.86174 1.43525 1.59073 1.33487 1.19345 0.86872 0.91268 0.95762 1.21543 0.98982 1.05585 0.97987 1.21294 0.95137 0.93648 0.99278 1.21305 1.01607 1.02451 0.92771 1.20035 0.92975 0.95212 0.97145 1.20867 1.02407 0.99445 0.94305 1.20482 1.00616 1.00624 0.97898 1.20968 0.90681 0.77323 0.82267 1.90682 1.66352 1.48171 1.40669 1.45992 1.08426 1.63123 1.17722 1.21334 0.78180 0.99062 0.99000 1.18359 0.94384 0.92995 0.89093 1.21684 0.97118 0.97496 1.01672 1.21696 0.96905 0.97508 1.01946 1.21282 0.92108 1.42051 1.01234 0.93955 1.25417 1.01243 0.94811 0.95565 1.69900 1.35410 1.42380 1.05901 0.85733 0.81927 0.77593 0.77701 1.20232 1.20667 1.20699 0.90528 0.90524 0.93381 0.87941 0.91574 0.83713 0.82945 0.83420 0.89813 0.91536 0.89650 0.86231 0.75005 0.94401 0.94229 0.94025 0.91774 0.96281 0.96369 0.91711 0.94122 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.48 71.98 0.61 -1.76 16 2 C -0.13 -2.77 5.61 30.59 0.17 -2.59 16 3 C 0.07 1.90 2.53 29.85 0.08 1.98 16 4 H 0.13 2.59 5.43 -2.39 -0.01 2.58 16 5 O -0.31 -9.49 9.12 -73.44 -0.67 -10.16 16 6 C 0.11 2.88 5.65 22.50 0.13 3.01 16 7 C -0.22 -4.38 7.36 22.37 0.16 -4.22 16 8 C -0.08 -1.19 10.04 22.26 0.22 -0.97 16 9 C -0.16 -2.54 9.70 22.28 0.22 -2.33 16 10 C -0.05 -0.99 5.88 -19.88 -0.12 -1.10 16 11 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 12 C -0.18 -4.29 9.64 22.37 0.22 -4.07 16 13 C 0.50 17.70 7.18 87.66 0.63 18.33 16 14 O -0.58 -26.36 16.51 15.96 0.26 -26.09 16 15 N -0.70 -23.65 4.86 -463.06 -2.25 -25.90 16 16 C 0.15 6.27 4.50 86.38 0.39 6.66 16 17 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 18 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 19 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 20 C -0.53 -27.76 8.01 25.60 0.21 -27.55 16 21 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 22 C 0.03 1.54 5.15 84.66 0.44 1.98 16 23 N -0.90 -47.04 9.35 21.45 0.20 -46.84 16 24 Si 0.94 42.47 29.54 68.60 2.03 44.50 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H 0.08 0.95 6.73 -2.38 -0.02 0.93 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.91 6.53 -2.39 -0.02 0.89 16 31 H 0.10 1.79 7.77 -2.39 -0.02 1.77 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.15 2.33 4.27 -2.91 -0.01 2.32 16 34 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 38 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 39 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.41 11.46 5.87 -92.71 -0.54 10.91 16 41 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 44 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 3.11 6.07 -2.38 -0.01 3.10 16 48 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 49 H 0.26 13.13 8.31 -92.70 -0.77 12.36 16 Total: -1.00 -66.44 382.95 5.17 -61.27 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.40 Total: 23.57 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 5.20 Total: -20.35 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -2.05 Total: -72.74 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.41 Total: -36.25 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -66.44 5.17 -61.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995867.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.058 kcal (2) G-P(sol) polarization free energy of solvation -66.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds