Wall clock time and date at job start Tue Mar 31 2020 14:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47065 * 2 1 4 4 O 1.42902 * 109.47381 * 120.00027 * 2 1 3 5 5 C 1.42898 * 113.99874 * 89.99797 * 4 2 1 6 6 H 1.09002 * 109.47259 * 30.00319 * 5 4 2 7 7 C 1.50699 * 109.46964 * 150.00106 * 5 4 2 8 8 O 1.21280 * 119.99966 * 5.00002 * 7 5 4 9 9 N 1.34774 * 120.00093 * 184.99640 * 7 5 4 10 10 C 1.46500 * 120.00022 * 180.02562 * 9 7 5 11 11 C 1.53001 * 109.47078 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47068 * 299.99634 * 11 10 9 13 13 C 1.52999 * 109.47387 * 60.00025 * 11 10 9 14 14 C 1.50699 * 109.47149 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99969 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00065 * 179.97438 * 14 11 10 17 17 N 1.31512 * 119.99984 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00070 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46982 * 60.00856 * 18 16 14 20 20 H 1.48503 * 109.47337 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47263 * 300.00955 * 18 16 14 22 22 C 1.50703 * 109.47171 * 270.00168 * 5 4 2 23 23 C 1.38236 * 119.99787 * 324.72807 * 22 5 4 24 24 C 1.38241 * 119.99636 * 179.81278 * 23 22 5 25 25 C 1.38234 * 120.00115 * 0.39672 * 24 23 22 26 26 C 1.38240 * 119.99714 * 359.85290 * 25 24 23 27 27 C 1.38228 * 120.00011 * 145.00451 * 22 5 4 28 28 H 1.09005 * 109.47549 * 59.99880 * 1 2 3 29 29 H 1.09004 * 109.47281 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47380 * 300.00112 * 1 2 3 31 31 H 1.09000 * 109.46943 * 240.00165 * 2 1 3 32 32 H 1.08997 * 109.46902 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46945 * 299.99654 * 3 2 1 34 34 H 1.08991 * 109.47226 * 60.00131 * 3 2 1 35 35 H 0.96999 * 119.99866 * 0.02562 * 9 7 5 36 36 H 1.08999 * 109.47229 * 300.00134 * 10 9 7 37 37 H 1.08996 * 109.47573 * 60.00199 * 10 9 7 38 38 H 1.09001 * 109.46690 * 60.00154 * 12 11 10 39 39 H 1.09000 * 109.47625 * 179.97438 * 12 11 10 40 40 H 1.08997 * 109.47159 * 300.00461 * 12 11 10 41 41 H 1.08995 * 109.47393 * 59.99705 * 13 11 10 42 42 H 1.09000 * 109.47386 * 180.02562 * 13 11 10 43 43 H 1.09001 * 109.46962 * 299.99684 * 13 11 10 44 44 H 0.96998 * 120.00209 * 179.97438 * 17 16 14 45 45 H 1.07996 * 120.00216 * 359.97438 * 23 22 5 46 46 H 1.08000 * 119.99857 * 180.22806 * 24 23 22 47 47 H 1.07998 * 120.00030 * 179.84064 * 25 24 23 48 48 H 1.08003 * 119.99655 * 179.97438 * 26 25 24 49 49 H 1.08004 * 120.00508 * 359.97379 * 27 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 1 2.4628 -2.2799 -0.0499 7 6 3.3127 -2.5500 1.8889 8 8 3.8222 -1.7816 2.6769 9 7 3.7414 -3.8258 1.8185 10 6 4.8226 -4.2845 2.6941 11 6 5.1147 -5.7600 2.4136 12 6 3.8564 -6.5886 2.6801 13 6 5.5359 -5.9278 0.9524 14 6 6.2273 -6.2318 3.3139 15 1 6.6805 -5.5478 4.0161 16 6 6.6660 -7.5369 3.2418 17 7 6.1138 -8.3700 2.3870 18 14 8.0457 -8.1216 4.3572 19 1 7.6382 -7.9581 5.7758 20 1 8.3291 -9.5537 4.0851 21 1 9.2668 -7.3176 4.0971 22 6 0.9286 -2.8087 1.3361 23 6 0.1239 -2.3465 2.3607 24 6 -1.0444 -3.0145 2.6770 25 6 -1.4037 -4.1492 1.9741 26 6 -0.5964 -4.6143 0.9529 27 6 0.5699 -3.9442 0.6342 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 3.3341 -4.4402 1.1880 36 1 5.7192 -3.6946 2.5040 37 1 4.5228 -4.1647 3.7351 38 1 3.0519 -6.2472 2.0286 39 1 4.0642 -7.6397 2.4799 40 1 3.5563 -6.4690 3.7211 41 1 6.4323 -5.3376 0.7625 42 1 5.7435 -6.9790 0.7525 43 1 4.7314 -5.5865 0.3009 44 1 6.4227 -9.2880 2.3359 45 1 0.4066 -1.4622 2.9124 46 1 -1.6749 -2.6513 3.4751 47 1 -2.3152 -4.6725 2.2228 48 1 -0.8770 -5.5011 0.4039 49 1 1.2006 -4.3077 -0.1637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:34 Heat of formation + Delta-G solvation = -69.147351 kcal Electronic energy + Delta-G solvation = -27954.440744 eV Core-core repulsion = 24267.211091 eV Total energy + Delta-G solvation = -3687.229653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.30032 -38.63314 -37.91035 -36.26280 -33.47107 -33.12861 -31.52396 -30.90290 -30.69104 -27.32457 -27.25386 -25.72390 -25.46235 -24.50815 -22.72627 -21.93365 -21.28857 -20.11477 -18.81028 -17.49065 -17.13303 -16.61754 -15.82791 -15.80565 -15.03007 -14.80889 -14.74421 -14.58453 -14.44628 -13.98733 -13.46999 -13.41618 -13.11924 -12.94446 -12.82628 -12.73995 -12.48271 -12.35793 -12.18690 -11.82378 -11.79264 -11.38837 -11.23323 -11.18297 -11.07662 -10.83951 -10.81312 -10.72590 -10.38028 -10.20774 -10.03847 -9.63064 -9.50982 -9.27713 -8.93918 -8.80960 -8.64720 -8.44245 -8.30082 -6.01651 -4.11641 1.22850 1.38486 2.98081 3.12306 3.30712 3.34775 3.38996 3.69352 4.18042 4.41441 4.56744 4.72588 4.83282 4.91459 4.96342 5.03203 5.08011 5.13266 5.17791 5.25105 5.42655 5.43745 5.51039 5.61245 5.66110 5.72147 5.87422 6.00428 6.02426 6.09535 6.22664 6.33474 6.39811 6.47358 6.48845 6.50920 6.77863 6.82671 6.92166 6.93767 7.01528 7.02513 7.12565 7.36064 7.55912 7.69617 8.01087 8.03942 8.15596 8.38878 8.69121 8.88759 9.54046 10.99729 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.003492 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.282653 B = 8017.121576 C = 9020.576357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.342 6.342 5 C 0.115 3.885 6 H 0.090 0.910 7 C 0.511 3.489 8 O -0.528 6.528 9 N -0.711 5.711 10 C 0.133 3.867 11 C 0.057 3.943 12 C -0.129 4.129 13 C -0.130 4.130 14 C -0.506 4.506 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.109 4.109 23 C -0.085 4.085 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.118 4.118 27 C -0.109 4.109 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.086 0.914 43 H 0.005 0.995 44 H 0.260 0.740 45 H 0.128 0.872 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 11.015 -7.849 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.260 6.260 5 C 0.053 3.947 6 H 0.107 0.893 7 C 0.294 3.706 8 O -0.405 6.405 9 N -0.363 5.363 10 C 0.011 3.989 11 C 0.056 3.944 12 C -0.187 4.187 13 C -0.188 4.188 14 C -0.545 4.545 15 H 0.075 0.925 16 C -0.134 4.134 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.110 4.110 23 C -0.103 4.103 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.127 4.127 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.025 0.975 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.146 0.854 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.142 0.858 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.632 11.476 -7.149 19.922 hybrid contribution 0.431 -0.867 0.076 0.971 sum -14.201 10.609 -7.073 19.085 Atomic orbital electron populations 1.22362 0.95826 1.02752 1.02258 1.22256 0.93842 0.94002 0.87841 1.21850 1.02095 0.94303 1.02343 1.88077 1.85784 1.17149 1.34955 1.20835 0.91627 0.82985 0.99238 0.89260 1.20025 0.83310 0.82942 0.84281 1.90688 1.57499 1.54312 1.37959 1.46192 1.38492 1.10298 1.41307 1.21744 0.87149 0.97650 0.92328 1.18350 0.94454 0.87463 0.94125 1.21811 0.95166 1.04131 0.97572 1.21828 0.96946 1.03857 0.96158 1.20948 1.17585 0.95880 1.20080 0.92482 1.24867 0.96561 0.96598 0.95407 1.69790 1.41765 1.05196 1.35713 0.86635 0.82531 0.77529 0.81176 1.20278 1.21339 1.20274 1.20057 0.96266 0.96768 0.97867 1.21000 0.93781 0.99633 0.95847 1.21154 0.97070 0.96007 0.99908 1.21183 0.99722 0.96476 0.96019 1.21085 0.94800 0.99750 0.97961 1.21004 0.97102 0.94862 0.99772 0.91996 0.92008 0.91827 0.92177 0.91786 0.91369 0.91697 0.76820 0.92616 0.92667 0.97515 0.89623 0.95496 0.95408 0.89559 0.97642 0.92970 0.85437 0.86091 0.86172 0.85828 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.06 37.16 0.34 -1.28 16 2 C 0.08 0.84 3.34 -26.73 -0.09 0.75 16 3 C -0.15 -1.40 9.56 37.16 0.36 -1.05 16 4 O -0.34 -4.92 8.36 -55.09 -0.46 -5.38 16 5 C 0.11 1.62 2.73 -29.03 -0.08 1.54 16 6 H 0.09 1.05 7.28 -51.93 -0.38 0.67 16 7 C 0.51 9.35 7.17 -10.99 -0.08 9.27 16 8 O -0.53 -11.78 16.51 -14.30 -0.24 -12.01 16 9 N -0.71 -12.98 4.91 -60.30 -0.30 -13.28 16 10 C 0.13 2.89 4.50 -4.04 -0.02 2.87 16 11 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 12 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 13 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 14 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 17 N -0.89 -23.51 9.35 55.43 0.52 -23.00 16 18 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.11 -1.41 3.53 -104.62 -0.37 -1.78 16 23 C -0.08 -1.10 8.72 -39.58 -0.35 -1.45 16 24 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.11 -1.27 9.52 -39.59 -0.38 -1.64 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.62 6.54 -51.93 -0.34 0.28 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.57 7.37 -51.93 -0.38 0.19 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 6.54 6.00 -40.82 -0.24 6.29 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 39 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 44 H 0.26 6.69 8.31 -40.82 -0.34 6.36 16 45 H 0.13 1.76 7.64 -52.49 -0.40 1.36 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 49 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -29.80 390.32 -9.44 -39.24 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.13 Total: 6.56 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.70 Total: -13.76 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.22 Total: -36.27 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.70 Total: -17.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.80 -9.44 -39.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.906 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds