Wall clock time and date at job start Tue Mar 31 2020 12:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46783 * 2 1 4 4 N 1.46503 * 109.46940 * 179.97438 * 3 2 1 5 5 C 1.37092 * 119.99795 * 271.62084 * 4 3 2 6 6 H 1.08003 * 119.99554 * 141.14857 * 5 4 3 7 7 C 1.38950 * 120.00440 * 321.13886 * 5 4 3 8 8 N 1.31411 * 119.99935 * 340.13508 * 7 5 4 9 9 Si 1.86800 * 120.00049 * 160.12840 * 7 5 4 10 10 H 1.48498 * 109.47230 * 90.00585 * 9 7 5 11 11 H 1.48501 * 109.47247 * 210.00562 * 9 7 5 12 12 H 1.48501 * 109.47415 * 330.00325 * 9 7 5 13 13 C 1.34775 * 119.99746 * 91.62854 * 4 3 2 14 14 O 1.21300 * 119.99614 * 184.99587 * 13 4 3 15 15 C 1.50697 * 120.00372 * 4.98921 * 13 4 3 16 16 H 1.09004 * 109.47405 * 311.67117 * 15 13 4 17 17 C 1.53007 * 109.46882 * 71.67218 * 15 13 4 18 18 O 1.42902 * 109.47400 * 191.66876 * 15 13 4 19 19 C 1.35894 * 117.00108 * 153.07030 * 18 15 13 20 20 C 1.38750 * 120.05949 * 185.92236 * 19 18 15 21 21 C 1.38121 * 119.94704 * 180.02562 * 20 19 18 22 22 C 1.38294 * 120.05674 * 359.97438 * 21 20 19 23 23 C 1.38239 * 120.10784 * 0.04458 * 22 21 20 24 24 C 1.50696 * 119.97011 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47233 * 299.99906 * 24 23 22 26 26 C 1.53002 * 109.47348 * 60.00250 * 24 23 22 27 27 C 1.38164 * 120.06138 * 359.67903 * 23 22 21 28 28 H 1.09004 * 109.46520 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47123 * 300.00001 * 1 2 3 30 30 H 1.08995 * 109.47068 * 60.00463 * 1 2 3 31 31 H 1.08995 * 109.47451 * 239.99688 * 2 1 3 32 32 H 1.09005 * 109.47121 * 119.99343 * 2 1 3 33 33 H 1.08995 * 109.47382 * 59.99646 * 3 2 1 34 34 H 1.08995 * 109.46940 * 299.99615 * 3 2 1 35 35 H 0.97005 * 120.00137 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47055 * 67.30938 * 17 15 13 37 37 H 1.09001 * 109.46774 * 187.30914 * 17 15 13 38 38 H 1.09003 * 109.46728 * 307.30392 * 17 15 13 39 39 H 1.07998 * 120.02239 * 0.03317 * 20 19 18 40 40 H 1.08000 * 119.97138 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.94106 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.47256 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.46823 * 59.99951 * 25 24 23 44 44 H 1.09004 * 109.47387 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.47238 * 299.99946 * 25 24 23 46 46 H 1.09000 * 109.47309 * 180.02562 * 26 24 23 47 47 H 1.09004 * 109.46838 * 300.00129 * 26 24 23 48 48 H 1.08999 * 109.47021 * 59.99686 * 26 24 23 49 49 H 1.07994 * 120.03497 * 180.29910 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1899 1.4092 1.1877 6 1 5.0907 0.8198 1.2750 7 6 3.7254 2.1338 2.2785 8 7 2.8918 3.1332 2.0966 9 14 4.2857 1.6870 4.0036 10 1 5.5161 2.4486 4.3372 11 1 3.2151 2.0261 4.9752 12 1 4.5713 0.2313 4.0700 13 6 4.1793 1.4756 -1.1658 14 8 5.3889 1.3843 -1.1699 15 6 3.4307 1.6259 -2.4651 16 1 2.6016 0.9186 -2.4906 17 6 2.8882 3.0520 -2.5790 18 8 4.3143 1.3637 -3.5571 19 6 3.7546 0.9038 -4.7069 20 6 4.5624 0.5122 -5.7649 21 6 3.9910 0.0456 -6.9326 22 6 2.6151 -0.0318 -7.0477 23 6 1.8081 0.3581 -5.9953 24 6 0.3091 0.2730 -6.1243 25 6 -0.1531 1.1500 -7.2897 26 6 -0.0988 -1.1784 -6.3852 27 6 2.3748 0.8202 -4.8229 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 2.5672 3.6388 2.8582 36 1 3.7191 3.7494 -2.6841 37 1 2.2396 3.1253 -3.4520 38 1 2.3192 3.2970 -1.6821 39 1 5.6370 0.5720 -5.6752 40 1 4.6194 -0.2598 -7.7562 41 1 2.1704 -0.3973 -7.9615 42 1 -0.1554 0.6211 -5.2017 43 1 0.3113 0.8024 -8.2125 44 1 -1.2374 1.0881 -7.3833 45 1 0.1373 2.1840 -7.1038 46 1 -1.1830 -1.2399 -6.4789 47 1 0.3657 -1.5260 -7.3080 48 1 0.2305 -1.8031 -5.5549 49 1 1.7440 1.1202 -3.9993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000499329132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:39 Heat of formation + Delta-G solvation = -59.425271 kcal Electronic energy + Delta-G solvation = -27964.659773 eV Core-core repulsion = 24277.851701 eV Total energy + Delta-G solvation = -3686.808072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.32539 -38.87633 -37.48108 -35.32692 -34.99980 -32.86600 -31.78307 -30.83455 -30.32645 -28.98562 -27.29481 -25.95215 -25.10807 -23.72475 -23.33786 -22.08563 -20.93275 -20.14843 -19.08960 -17.63286 -16.87101 -16.16717 -16.02749 -15.64132 -15.09186 -14.91712 -14.55997 -14.37609 -14.06595 -13.91798 -13.75064 -13.65327 -13.51506 -13.10806 -12.90233 -12.48064 -12.30616 -12.15476 -12.06203 -11.97853 -11.66655 -11.64052 -11.51956 -11.33205 -11.25479 -11.17117 -11.00161 -10.81800 -10.75552 -10.50457 -10.45498 -10.36124 -10.25563 -9.94284 -8.99982 -8.76841 -8.42380 -7.92289 -7.48583 -6.36931 -4.04308 1.41453 1.57718 3.14812 3.23067 3.25980 3.40068 3.76299 3.86705 4.16856 4.52164 4.70525 4.78805 4.92100 5.00845 5.05550 5.15900 5.26423 5.28755 5.40330 5.41510 5.45555 5.49832 5.50974 5.58509 5.65081 5.65757 5.68481 5.75686 5.84110 5.89717 5.96055 6.03934 6.07450 6.08601 6.11535 6.15989 6.29646 6.39778 6.47329 6.51675 6.54505 6.58462 6.67603 6.86111 6.92180 7.18876 7.55457 7.70817 8.22802 8.46616 9.12569 9.31817 9.92448 10.66614 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.003606 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.175676 B = 7762.984515 C = 8678.392581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.092 3.908 4 N -0.435 5.435 5 C -0.308 4.308 6 H 0.091 0.909 7 C 0.040 3.960 8 N -0.869 5.869 9 Si 0.918 3.082 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.466 3.534 14 O -0.559 6.559 15 C 0.070 3.930 16 H 0.082 0.918 17 C -0.172 4.172 18 O -0.284 6.284 19 C 0.144 3.856 20 C -0.161 4.161 21 C -0.080 4.080 22 C -0.164 4.164 23 C -0.038 4.038 24 C -0.059 4.059 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.212 4.212 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.268 0.732 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.704 -4.681 -14.866 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.032 4.032 4 N -0.156 5.156 5 C -0.435 4.435 6 H 0.108 0.892 7 C -0.164 4.164 8 N -0.507 5.507 9 Si 0.745 3.255 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.252 3.748 14 O -0.440 6.440 15 C 0.010 3.990 16 H 0.100 0.900 17 C -0.230 4.230 18 O -0.196 6.196 19 C 0.097 3.903 20 C -0.179 4.179 21 C -0.098 4.098 22 C -0.182 4.182 23 C -0.038 4.038 24 C -0.078 4.078 25 C -0.200 4.200 26 C -0.200 4.200 27 C -0.230 4.230 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.981 -4.535 -14.672 17.790 hybrid contribution -0.089 -0.067 0.915 0.922 sum -9.070 -4.602 -13.757 17.108 Atomic orbital electron populations 1.21683 0.96236 1.00818 1.01530 1.21947 0.94878 0.99149 1.01881 1.21867 0.82201 0.94945 1.04216 1.43330 1.04434 1.63942 1.03856 1.19394 1.10550 1.27478 0.86115 0.89157 1.25378 0.97065 0.93597 1.00393 1.69883 1.32813 1.16344 1.31658 0.86069 0.78419 0.79343 0.81716 1.20214 1.20767 1.19334 1.19948 0.87948 0.82580 0.84297 1.90555 1.14003 1.52829 1.86610 1.22413 0.92472 0.97977 0.86115 0.90004 1.22339 1.02085 0.95413 1.03125 1.86267 1.35826 1.78616 1.18846 1.19202 0.91506 0.92553 0.87036 1.20454 1.00093 1.04813 0.92589 1.20874 0.94803 0.97595 0.96496 1.20759 0.93322 1.05096 0.99018 1.19593 0.95036 0.96200 0.92989 1.20153 0.91333 0.96467 0.99798 1.21840 1.00735 0.99700 0.97677 1.21843 1.00908 0.95236 1.02013 1.21242 0.93910 1.08312 0.99561 0.93335 0.92603 0.93270 0.93481 0.91322 0.86927 0.92865 0.92173 0.91015 0.92082 0.89284 0.85324 0.85748 0.86422 0.90430 0.92462 0.92474 0.92479 0.92461 0.92461 0.92425 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.14 -2.49 6.20 -26.73 -0.17 -2.66 16 3 C 0.09 1.90 4.41 -4.04 -0.02 1.89 16 4 N -0.44 -10.87 2.51 -114.81 -0.29 -11.16 16 5 C -0.31 -8.44 8.91 -14.94 -0.13 -8.57 16 6 H 0.09 2.61 7.74 -52.48 -0.41 2.21 16 7 C 0.04 1.04 5.00 -17.47 -0.09 0.95 16 8 N -0.87 -22.67 11.44 55.50 0.63 -22.03 16 9 Si 0.92 20.30 29.60 -169.99 -5.03 15.27 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.47 11.76 6.95 -10.99 -0.08 11.68 16 14 O -0.56 -16.45 16.41 -14.09 -0.23 -16.68 16 15 C 0.07 1.40 1.78 -27.88 -0.05 1.35 16 16 H 0.08 1.47 4.95 -51.93 -0.26 1.21 16 17 C -0.17 -3.03 8.83 37.16 0.33 -2.70 16 18 O -0.28 -5.81 9.35 -39.04 -0.37 -6.18 16 19 C 0.14 2.43 6.62 -39.21 -0.26 2.17 16 20 C -0.16 -2.39 9.99 -39.43 -0.39 -2.79 16 21 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 22 C -0.16 -1.88 8.71 -39.56 -0.34 -2.23 16 23 C -0.04 -0.47 4.78 -104.65 -0.50 -0.97 16 24 C -0.06 -0.58 3.09 -91.77 -0.28 -0.86 16 25 C -0.14 -1.20 9.01 37.16 0.33 -0.86 16 26 C -0.14 -1.24 9.01 37.16 0.33 -0.90 16 27 C -0.21 -3.09 8.03 -39.43 -0.32 -3.40 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.82 7.64 -51.93 -0.40 0.42 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.11 2.58 5.54 -51.93 -0.29 2.29 16 34 H 0.05 0.98 4.48 -51.93 -0.23 0.75 16 35 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 0.89 7.05 -51.93 -0.37 0.52 16 38 H 0.09 1.60 5.98 -51.93 -0.31 1.29 16 39 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.09 7.09 -52.49 -0.37 0.72 16 42 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 43 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.13 1.80 5.29 -52.49 -0.28 1.52 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -31.25 388.00 -8.96 -40.21 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.87 Total: 5.66 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.66 Total: -10.93 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.35 Total: -33.20 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.60 Total: -22.86 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.25 -8.96 -40.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000499329132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.216 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds