Wall clock time and date at job start Tue Mar 31 2020 14:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47607 * 2 1 4 4 C 1.53003 * 109.46943 * 120.00654 * 2 1 3 5 5 C 1.52999 * 109.47480 * 59.99552 * 4 2 1 6 6 C 1.52997 * 109.47335 * 60.00013 * 5 4 2 7 7 C 1.53003 * 109.46826 * 300.00387 * 6 5 4 8 8 C 1.52997 * 109.46751 * 239.99954 * 2 1 3 9 9 H 1.09000 * 109.47436 * 180.02562 * 8 2 1 10 10 C 1.52996 * 109.47141 * 60.00261 * 8 2 1 11 11 C 1.50702 * 109.47159 * 174.99728 * 10 8 2 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 8 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50697 * 109.46949 * 90.00203 * 14 13 11 16 16 H 1.08004 * 120.00186 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00081 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47135 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47061 * 119.99902 * 19 17 15 22 22 H 1.48503 * 109.47075 * 240.00004 * 19 17 15 23 23 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 24 24 C 1.50699 * 109.47106 * 89.99354 * 23 13 11 25 25 C 1.34513 * 125.78754 * 90.00726 * 24 23 13 26 26 C 1.41383 * 106.84275 * 180.02562 * 25 24 23 27 27 C 1.34517 * 106.83951 * 359.97438 * 26 25 24 28 28 O 1.34301 * 125.79267 * 269.69443 * 24 23 13 29 29 H 1.09000 * 109.47607 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46540 * 300.00039 * 1 2 3 31 31 H 1.08993 * 109.46888 * 59.99151 * 1 2 3 32 32 H 1.09005 * 109.46936 * 299.99063 * 4 2 1 33 33 H 1.08999 * 109.47314 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46781 * 299.99707 * 5 4 2 35 35 H 1.09001 * 109.47044 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47103 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.46626 * 59.99655 * 6 5 4 38 38 H 1.09007 * 109.47171 * 299.99429 * 7 6 5 39 39 H 1.09005 * 109.46936 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.47066 * 54.99931 * 10 8 2 41 41 H 1.08994 * 109.47405 * 294.99761 * 10 8 2 42 42 H 1.09001 * 109.47567 * 210.00057 * 14 13 11 43 43 H 1.09005 * 109.47076 * 330.00563 * 14 13 11 44 44 H 0.96991 * 119.99957 * 180.02562 * 18 17 15 45 45 H 1.08994 * 109.46996 * 209.99677 * 23 13 11 46 46 H 1.09001 * 109.46578 * 329.99540 * 23 13 11 47 47 H 1.08004 * 126.58017 * 0.02695 * 25 24 23 48 48 H 1.08000 * 126.58017 * 180.02562 * 26 25 24 49 49 H 1.07999 * 125.79142 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5299 -2.1639 1.2492 6 6 2.0398 -2.8851 -0.0001 7 6 1.5298 -2.1637 -1.2493 8 6 2.0399 -0.7213 -1.2492 9 1 3.1299 -0.7217 -1.2491 10 6 1.5299 0.0000 -2.4984 11 6 2.1308 -0.6353 -3.7258 12 8 2.8916 -1.5730 -3.6126 13 7 1.8179 -0.1653 -4.9496 14 6 2.3973 -0.7867 -6.1431 15 6 1.4980 -1.8992 -6.6170 16 1 0.5858 -2.1209 -6.0829 17 6 1.8396 -2.6341 -7.7325 18 7 2.9506 -2.3645 -8.3827 19 14 0.7244 -4.0126 -8.3204 20 1 -0.4539 -4.1132 -7.4223 21 1 0.2695 -3.7250 -9.7044 22 1 1.4716 -5.2958 -8.3015 23 6 0.8985 0.9671 -5.0865 24 6 1.6813 2.2547 -5.0686 25 6 2.1928 2.8793 -6.1446 26 6 2.8447 4.0415 -5.6721 27 6 2.6920 4.0579 -4.3358 28 8 1.9816 2.9763 -3.9765 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7218 1.2490 34 1 0.4399 -2.1638 1.2492 35 1 1.8929 -2.6776 2.1393 36 1 1.6760 -3.9126 -0.0003 37 1 3.1298 -2.8851 -0.0001 38 1 0.4398 -2.1637 -1.2493 39 1 1.8927 -2.6779 -2.1393 40 1 1.8184 1.0503 -2.4548 41 1 0.4437 -0.0768 -2.5444 42 1 2.4963 -0.0393 -6.9303 43 1 3.3799 -1.1920 -5.9011 44 1 3.1907 -2.8812 -9.1676 45 1 0.3574 0.8838 -6.0290 46 1 0.1895 0.9614 -4.2587 47 1 2.1196 2.5552 -7.1722 48 1 3.3646 4.7757 -6.2696 49 1 3.0721 4.8150 -3.6659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522191726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:13 Heat of formation + Delta-G solvation = -47.570705 kcal Electronic energy + Delta-G solvation = -28234.429911 eV Core-core repulsion = 24548.135892 eV Total energy + Delta-G solvation = -3686.294019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.31625 -39.85395 -38.27810 -35.18861 -32.94287 -32.75605 -32.39854 -31.48177 -30.11345 -28.35107 -27.08454 -25.92135 -25.23247 -22.94750 -22.08657 -21.47585 -21.17800 -20.46038 -18.49577 -18.22456 -17.24569 -16.57190 -16.26455 -15.84288 -15.40151 -15.28756 -14.95223 -14.45034 -14.33204 -14.08797 -13.77822 -13.57413 -12.88124 -12.77617 -12.64932 -12.60795 -12.51813 -12.35822 -12.15496 -11.99494 -11.61629 -11.52898 -11.47176 -11.21259 -11.13713 -10.93979 -10.87079 -10.61610 -10.53266 -10.18721 -10.02966 -9.89252 -9.76656 -9.70092 -9.62593 -8.76084 -8.44900 -8.29016 -7.75882 -6.05149 -4.09951 1.91173 2.83483 3.15096 3.29157 3.36979 3.40088 3.52041 4.00962 4.44077 4.76079 4.79546 4.82716 4.93946 5.13837 5.21064 5.25942 5.28945 5.31206 5.36938 5.42149 5.45164 5.48818 5.55312 5.70656 5.73109 5.78383 5.82479 5.90013 5.92728 6.01619 6.02531 6.04150 6.12107 6.19251 6.22028 6.27099 6.31132 6.37549 6.40158 6.51846 6.72403 6.74337 6.85527 7.04810 7.33525 7.45723 7.53200 7.91338 8.22125 8.36894 8.90210 9.10172 9.55437 11.03014 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.005167 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.706120 B = 5417.856159 C = 8014.295018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.061 4.061 9 H 0.074 0.926 10 C -0.141 4.141 11 C 0.509 3.491 12 O -0.531 6.531 13 N -0.596 5.596 14 C 0.246 3.754 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.192 3.808 24 C -0.024 4.024 25 C -0.195 4.195 26 C -0.213 4.213 27 C -0.051 4.051 28 O -0.177 6.177 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.262 0.738 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.149 0.851 48 H 0.144 0.856 49 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 10.602 14.696 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.080 4.080 9 H 0.093 0.907 10 C -0.181 4.181 11 C 0.297 3.703 12 O -0.408 6.408 13 N -0.328 5.328 14 C 0.127 3.873 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.067 3.933 24 C -0.076 4.076 25 C -0.215 4.215 26 C -0.232 4.232 27 C -0.119 4.119 28 O -0.073 6.073 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.132 0.868 46 H 0.102 0.898 47 H 0.167 0.833 48 H 0.162 0.838 49 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.129 9.926 14.873 18.351 hybrid contribution -0.356 -0.410 -0.781 0.951 sum -4.484 9.516 14.092 17.585 Atomic orbital electron populations 1.21988 0.95578 1.02142 1.01195 1.21131 0.95830 0.98853 0.94704 0.91566 1.21532 1.00500 0.95756 0.97153 1.21583 1.00760 0.95620 0.97819 1.21492 1.00794 0.98544 0.94530 1.21751 0.99861 0.95305 0.99053 1.20850 1.00669 0.94782 0.91699 0.90747 1.21880 1.01609 1.00935 0.93655 1.20475 0.81835 0.83669 0.84354 1.90630 1.36151 1.27995 1.86024 1.48335 1.45961 1.30366 1.08114 1.19295 0.95071 0.92654 0.80236 1.21460 1.07449 1.16433 1.11081 0.92325 1.24929 0.95302 0.97329 0.96460 1.69946 1.23139 1.40776 1.19399 0.86465 0.80654 0.82073 0.78363 1.19774 1.20996 1.20915 1.19864 0.89813 0.78952 1.04701 1.23331 1.03989 0.96092 0.84178 1.21703 1.02998 0.96605 1.00217 1.21822 1.05828 1.00698 0.94879 1.23924 1.00286 0.91415 0.96313 1.83998 1.56824 1.30827 1.35617 0.91955 0.93297 0.92572 0.92479 0.92159 0.91958 0.92750 0.92500 0.92169 0.92640 0.89408 0.89396 0.89514 0.95043 0.93847 0.92788 0.86784 0.89846 0.83289 0.83822 0.78607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.15 37.16 0.30 -1.25 16 2 C -0.09 -0.98 2.72 -90.62 -0.25 -1.22 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.17 5.45 -26.73 -0.15 -1.31 16 5 C -0.12 -1.28 5.65 -26.73 -0.15 -1.43 16 6 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 7 C -0.12 -1.84 4.67 -26.73 -0.12 -1.96 16 8 C -0.06 -0.87 1.61 -90.62 -0.15 -1.02 16 9 H 0.07 1.20 7.96 -51.93 -0.41 0.79 16 10 C -0.14 -2.14 3.22 -27.88 -0.09 -2.23 16 11 C 0.51 10.44 7.39 -10.98 -0.08 10.36 16 12 O -0.53 -12.98 13.54 5.55 0.08 -12.91 16 13 N -0.60 -12.41 2.44 -176.43 -0.43 -12.84 16 14 C 0.25 6.34 5.16 -5.20 -0.03 6.31 16 15 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 16 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 19 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.19 3.12 5.75 -5.19 -0.03 3.09 16 24 C -0.02 -0.39 6.86 -35.63 -0.24 -0.63 16 25 C -0.20 -3.05 10.81 -39.70 -0.43 -3.48 16 26 C -0.21 -2.84 10.91 -39.70 -0.43 -3.28 16 27 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 28 O -0.18 -2.58 9.58 5.71 0.05 -2.53 16 29 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.78 6.43 -51.93 -0.33 0.45 16 39 H 0.09 1.66 5.95 -51.93 -0.31 1.35 16 40 H 0.09 1.26 6.97 -51.93 -0.36 0.90 16 41 H 0.09 1.18 5.96 -51.93 -0.31 0.87 16 42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.11 1.81 8.07 -51.93 -0.42 1.39 16 46 H 0.08 1.13 6.43 -51.93 -0.33 0.79 16 47 H 0.15 2.32 8.06 -52.48 -0.42 1.90 16 48 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 49 H 0.20 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -32.08 379.24 -8.92 -41.00 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.98 Total: 3.77 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.07 Total: -13.21 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.31 Total: -38.42 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.13 Total: -15.44 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.08 -8.92 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522191726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.568 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds