Wall clock time and date at job start Tue Mar 31 2020 14:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47179 * 2 1 4 4 C 1.52999 * 109.47033 * 240.00182 * 2 1 3 5 5 C 1.53002 * 109.47190 * 299.99633 * 4 2 1 6 6 C 1.52998 * 109.47080 * 300.00553 * 5 4 2 7 7 C 1.52999 * 109.47560 * 59.99673 * 6 5 4 8 8 C 1.52999 * 109.47406 * 119.99795 * 2 1 3 9 9 H 1.08990 * 109.47496 * 179.97438 * 8 2 1 10 10 C 1.53005 * 109.47231 * 300.00518 * 8 2 1 11 11 C 1.50700 * 109.46887 * 186.39575 * 10 8 2 12 12 O 1.21287 * 120.00149 * 6.13659 * 11 10 8 13 13 N 1.34778 * 119.99706 * 186.13875 * 11 10 8 14 14 C 1.46499 * 120.00261 * 4.99096 * 13 11 10 15 15 C 1.50700 * 109.46970 * 84.80085 * 14 13 11 16 16 H 1.07994 * 120.00266 * 4.73995 * 15 14 13 17 17 C 1.37880 * 119.99860 * 184.73920 * 15 14 13 18 18 N 1.31516 * 120.00141 * 185.01628 * 17 15 14 19 19 Si 1.86803 * 119.99984 * 5.01297 * 17 15 14 20 20 H 1.48499 * 109.47090 * 265.18941 * 19 17 15 21 21 H 1.48500 * 109.47207 * 145.18507 * 19 17 15 22 22 H 1.48501 * 109.47263 * 25.18884 * 19 17 15 23 23 C 1.46496 * 119.99808 * 184.99131 * 13 11 10 24 24 C 1.50703 * 109.47043 * 269.99887 * 23 13 11 25 25 C 1.34513 * 125.78897 * 90.00703 * 24 23 13 26 26 C 1.41380 * 106.83915 * 180.02562 * 25 24 23 27 27 C 1.34511 * 106.84494 * 359.97438 * 26 25 24 28 28 O 1.34308 * 125.78751 * 269.69029 * 24 23 13 29 29 H 1.09009 * 109.47249 * 304.98416 * 1 2 3 30 30 H 1.08992 * 109.47579 * 64.98829 * 1 2 3 31 31 H 1.09003 * 109.47309 * 184.99067 * 1 2 3 32 32 H 1.09001 * 109.46870 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.47298 * 59.99862 * 4 2 1 34 34 H 1.08998 * 109.47461 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.46549 * 60.00031 * 5 4 2 36 36 H 1.09000 * 109.47003 * 299.99200 * 6 5 4 37 37 H 1.09000 * 109.47056 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47298 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.46870 * 59.99955 * 7 6 5 40 40 H 1.08996 * 109.47373 * 66.39450 * 10 8 2 41 41 H 1.08998 * 109.46422 * 306.39171 * 10 8 2 42 42 H 1.09001 * 109.46547 * 324.80472 * 14 13 11 43 43 H 1.09000 * 109.47300 * 204.80563 * 14 13 11 44 44 H 0.97000 * 119.99846 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.47642 * 29.99636 * 23 13 11 46 46 H 1.09004 * 109.47167 * 149.99980 * 23 13 11 47 47 H 1.07993 * 126.57934 * 359.95308 * 25 24 23 48 48 H 1.08001 * 126.58140 * 179.97438 * 26 25 24 49 49 H 1.08000 * 125.79742 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8849 0.0000 7 6 1.5300 -2.1637 1.2493 8 6 2.0401 -0.7212 1.2492 9 1 3.1300 -0.7216 1.2490 10 6 1.5300 0.0000 2.4985 11 6 2.1575 -0.6131 3.7238 12 8 3.0182 -1.4594 3.6055 13 7 1.7622 -0.2210 4.9512 14 6 0.6482 0.7194 5.0964 15 6 -0.6546 -0.0376 5.0720 16 1 -0.6515 -1.1170 5.0367 17 6 -1.8507 0.6479 5.0947 18 7 -2.9856 -0.0121 5.1730 19 14 -1.8593 2.5142 5.0144 20 1 -1.9179 3.0686 6.3907 21 1 -3.0449 2.9711 4.2457 22 1 -0.6219 2.9865 4.3427 23 6 2.4464 -0.7352 6.1401 24 6 1.7692 -1.9999 6.6018 25 6 2.0796 -3.2477 6.2068 26 6 1.1990 -4.1225 6.8836 27 6 0.4035 -3.3571 7.6522 28 8 0.7574 -2.0727 7.4821 29 1 -0.3634 0.5893 0.8420 30 1 -0.3634 0.4345 -0.9312 31 1 -0.3634 -1.0238 0.0894 32 1 3.1300 -0.7208 -1.2495 33 1 1.6766 -0.2074 -2.1392 34 1 1.8937 -2.6777 -2.1390 35 1 0.4400 -2.1637 -1.2492 36 1 3.1300 -2.8850 0.0000 37 1 1.6771 -3.9128 -0.0002 38 1 1.8937 -2.6773 2.1392 39 1 0.4400 -2.1638 1.2492 40 1 0.4461 -0.0981 2.5577 41 1 1.7968 1.0554 2.4431 42 1 0.6679 1.4354 4.2749 43 1 0.7422 1.2505 6.0436 44 1 -3.8270 0.4701 5.1886 45 1 3.4873 -0.9486 5.8967 46 1 2.4044 0.0102 6.9344 47 1 2.8522 -3.5274 5.5061 48 1 1.1704 -5.1989 6.7997 49 1 -0.3835 -3.7149 8.2995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522191727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:15 Heat of formation + Delta-G solvation = -59.908437 kcal Electronic energy + Delta-G solvation = -28735.364296 eV Core-core repulsion = 25048.535272 eV Total energy + Delta-G solvation = -3686.829023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.37910 -41.21282 -39.63857 -36.85540 -34.66236 -33.91786 -33.66965 -32.59134 -31.83293 -29.66306 -28.90975 -27.38014 -26.13386 -24.45742 -23.20468 -22.57804 -22.48567 -21.45895 -19.88515 -19.26991 -19.11771 -18.30824 -17.81513 -17.28353 -16.58341 -16.42860 -16.38092 -16.04701 -15.52410 -15.16773 -15.07554 -14.64522 -14.56396 -14.26177 -13.83126 -13.77329 -13.68341 -13.66659 -13.57667 -13.42289 -13.16485 -13.13362 -12.64705 -12.62869 -12.40865 -12.24052 -12.16681 -11.92651 -11.85910 -11.68183 -11.56964 -11.06356 -11.00378 -10.79243 -10.76893 -10.74801 -10.50070 -9.63145 -9.27998 -8.24901 -6.30084 0.81377 1.40402 1.41761 1.50866 1.66407 1.79889 2.29072 2.36731 2.43451 3.08853 3.68245 3.77100 3.84287 3.87304 4.00282 4.17251 4.19165 4.30460 4.35550 4.37261 4.47130 4.50429 4.52673 4.55347 4.60688 4.69560 4.78429 4.81139 4.85610 4.92867 4.93676 4.96538 5.04364 5.07269 5.13208 5.21400 5.25744 5.26218 5.31115 5.40082 5.45353 5.48713 5.50607 5.61041 5.64867 5.66522 5.73857 6.22267 6.31593 6.60251 6.75747 7.28220 7.37950 8.91870 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009704 B = 0.005771 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.805915 B = 4850.278260 C = 6596.535104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.054 4.054 9 H 0.071 0.929 10 C -0.134 4.134 11 C 0.520 3.480 12 O -0.574 6.574 13 N -0.597 5.597 14 C 0.213 3.787 15 C -0.522 4.522 16 H 0.021 0.979 17 C 0.019 3.981 18 N -0.943 5.943 19 Si 0.935 3.065 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.228 1.228 23 C 0.194 3.806 24 C -0.032 4.032 25 C -0.211 4.211 26 C -0.229 4.229 27 C -0.048 4.048 28 O -0.184 6.184 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.265 0.735 45 H 0.117 0.883 46 H 0.106 0.894 47 H 0.143 0.857 48 H 0.167 0.833 49 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 0.563 -7.001 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.099 0.901 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.073 4.073 9 H 0.089 0.911 10 C -0.174 4.174 11 C 0.310 3.690 12 O -0.455 6.455 13 N -0.327 5.327 14 C 0.092 3.908 15 C -0.561 4.561 16 H 0.040 0.960 17 C -0.180 4.180 18 N -0.583 5.583 19 Si 0.757 3.243 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.151 1.151 23 C 0.071 3.929 24 C -0.083 4.083 25 C -0.232 4.232 26 C -0.248 4.248 27 C -0.116 4.116 28 O -0.080 6.080 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.135 0.865 46 H 0.124 0.876 47 H 0.160 0.840 48 H 0.184 0.816 49 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 10.465 0.431 -6.912 12.549 hybrid contribution -0.991 -0.069 0.516 1.119 sum 9.474 0.362 -6.396 11.437 Atomic orbital electron populations 1.21978 0.95802 1.01596 1.01624 1.21126 0.95502 0.99442 0.93964 0.90077 1.21531 1.00701 0.95218 0.97005 1.21563 1.00752 0.96039 0.97192 1.21455 1.00553 0.98491 0.94356 1.21571 0.99360 0.96117 0.98159 1.20837 0.99892 0.94122 0.92468 0.91095 1.21832 1.02135 1.01431 0.91966 1.21018 0.81398 0.81313 0.85242 1.90557 1.34614 1.33260 1.87060 1.48113 1.34065 1.45538 1.05023 1.19768 0.83598 0.88793 0.98667 1.21352 0.90680 0.93210 1.50866 0.96036 1.25753 0.94678 1.03559 0.93960 1.70082 0.98500 1.38154 1.51597 0.85889 0.79551 0.79611 0.79216 1.19575 1.21230 1.15076 1.19920 0.95028 0.89974 0.87935 1.23219 0.91528 0.98422 0.95136 1.21719 1.04402 0.92512 1.04525 1.22069 0.99379 1.01637 1.01742 1.24633 1.02478 0.80107 1.04383 1.84065 1.42910 1.30034 1.50990 0.93803 0.91428 0.93241 0.91529 0.90499 0.90791 0.92288 0.92041 0.92592 0.94083 0.93755 0.89539 0.87626 0.92694 0.93802 0.92606 0.86509 0.87567 0.83955 0.81576 0.75775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 7.99 71.98 0.58 -3.45 16 2 C -0.08 -1.97 2.72 -10.79 -0.03 -2.00 16 3 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 4 C -0.11 -2.14 5.45 30.59 0.17 -1.97 16 5 C -0.12 -2.53 5.65 30.59 0.17 -2.36 16 6 C -0.11 -2.90 5.92 30.59 0.18 -2.72 16 7 C -0.11 -3.77 4.69 30.60 0.14 -3.63 16 8 C -0.05 -1.63 1.60 -10.79 -0.02 -1.64 16 9 H 0.07 2.17 7.81 -2.39 -0.02 2.15 16 10 C -0.13 -4.60 3.10 29.85 0.09 -4.51 16 11 C 0.52 20.38 7.23 87.66 0.63 21.01 16 12 O -0.57 -23.84 13.93 -3.05 -0.04 -23.88 16 13 N -0.60 -23.68 2.45 -830.49 -2.04 -25.72 16 14 C 0.21 9.05 4.05 85.63 0.35 9.40 16 15 C -0.52 -27.93 9.35 25.60 0.24 -27.69 16 16 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 17 C 0.02 1.02 5.47 84.65 0.46 1.48 16 18 N -0.94 -56.57 13.96 21.45 0.30 -56.27 16 19 Si 0.93 39.65 27.68 68.60 1.90 41.54 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.23 -8.35 6.26 99.48 0.62 -7.73 16 23 C 0.19 6.94 5.94 85.63 0.51 7.45 16 24 C -0.03 -1.27 6.90 24.83 0.17 -1.10 16 25 C -0.21 -8.19 10.81 22.19 0.24 -7.95 16 26 C -0.23 -8.02 10.91 22.19 0.24 -7.77 16 27 C -0.05 -1.73 12.09 66.97 0.81 -0.92 16 28 O -0.18 -7.83 10.65 -2.60 -0.03 -7.86 16 29 H 0.04 1.29 6.86 -2.38 -0.02 1.28 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.42 4.83 -2.39 -0.01 1.41 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.33 6.54 -2.39 -0.02 1.32 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.61 6.30 -2.39 -0.02 1.59 16 39 H 0.04 1.58 6.32 -2.39 -0.02 1.56 16 40 H 0.09 3.44 6.11 -2.39 -0.01 3.43 16 41 H 0.11 3.11 7.86 -2.39 -0.02 3.09 16 42 H 0.06 2.15 5.30 -2.39 -0.01 2.14 16 43 H 0.04 1.77 7.63 -2.39 -0.02 1.75 16 44 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.12 3.77 7.50 -2.38 -0.02 3.75 16 46 H 0.11 3.29 7.86 -2.38 -0.02 3.27 16 47 H 0.14 5.42 8.06 -2.91 -0.02 5.39 16 48 H 0.17 4.70 8.06 -2.91 -0.02 4.68 16 49 H 0.23 6.16 8.06 -2.91 -0.02 6.14 16 Total: -1.00 -67.90 377.46 5.87 -62.03 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: 0.84 Total: 38.52 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 4.94 Total: -28.36 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.74 Total: -81.99 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.07 Total: -31.74 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 1.90 Total: 41.54 kcal Total: -67.90 5.87 -62.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522191727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.119 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds