Wall clock time and date at job start Tue Mar 31 2020 12:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 O 1.42904 * 109.47094 * 120.00180 * 2 1 3 5 5 C 1.35899 * 117.00205 * 154.98632 * 4 2 1 6 6 C 1.38755 * 120.05372 * 5.48583 * 5 4 2 7 7 C 1.38125 * 119.94192 * 180.02562 * 6 5 4 8 8 C 1.38291 * 120.05327 * 359.97438 * 7 6 5 9 9 C 1.38238 * 120.11333 * 0.02562 * 8 7 6 10 10 C 1.38163 * 120.05686 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.02933 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47664 * 265.02714 * 11 10 9 13 13 O 1.21285 * 119.99475 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00440 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00124 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47083 * 89.99701 * 15 14 12 17 17 H 1.07995 * 119.99807 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99965 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99879 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00254 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46866 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47090 * 119.99719 * 20 18 16 23 23 H 1.48496 * 109.47050 * 240.00049 * 20 18 16 24 24 C 1.46501 * 119.99739 * 359.97438 * 14 12 11 25 25 C 1.53001 * 109.46937 * 120.00463 * 24 14 12 26 26 C 1.53004 * 109.46966 * 240.00278 * 24 14 12 27 27 H 1.08995 * 109.47206 * 300.00501 * 1 2 3 28 28 H 1.09002 * 109.46685 * 59.99851 * 1 2 3 29 29 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47112 * 239.99882 * 2 1 3 31 31 H 1.09010 * 109.47216 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47350 * 299.99741 * 3 2 1 33 33 H 1.08997 * 109.47161 * 60.00352 * 3 2 1 34 34 H 1.07994 * 120.03069 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.97046 * 179.72495 * 7 6 5 36 36 H 1.08005 * 119.94195 * 179.97438 * 8 7 6 37 37 H 1.08009 * 119.97059 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.46925 * 25.02882 * 11 10 9 39 39 H 1.08997 * 109.47076 * 145.02259 * 11 10 9 40 40 H 1.08996 * 109.46995 * 210.00000 * 15 14 12 41 41 H 1.08997 * 109.47012 * 329.99872 * 15 14 12 42 42 H 0.96997 * 119.99902 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.47014 * 359.97438 * 24 14 12 44 44 H 1.09000 * 109.47197 * 59.99735 * 25 24 14 45 45 H 1.08999 * 109.46759 * 180.02562 * 25 24 14 46 46 H 1.09001 * 109.47093 * 299.99321 * 25 24 14 47 47 H 1.08994 * 109.47519 * 59.99603 * 26 24 14 48 48 H 1.08995 * 109.46931 * 180.02562 * 26 24 14 49 49 H 1.09003 * 109.46801 * 299.99794 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2465 -1.2251 1.0978 6 6 4.0351 -1.0234 -0.0259 7 6 5.2951 -1.5854 -0.0938 8 6 5.7709 -2.3479 0.9572 9 6 4.9871 -2.5503 2.0778 10 6 3.7261 -1.9903 2.1506 11 6 2.8719 -2.2118 3.3723 12 6 1.9479 -3.3783 3.1346 13 8 1.9796 -3.9711 2.0770 14 7 1.0858 -3.7620 4.0968 15 6 0.1871 -4.8957 3.8654 16 6 0.8592 -6.1687 4.3117 17 1 1.8561 -6.1364 4.7257 18 6 0.2018 -7.3744 4.1903 19 7 -1.0117 -7.4138 3.6847 20 14 1.0344 -8.9523 4.7440 21 1 2.3866 -8.6393 5.2721 22 1 0.2224 -9.5929 5.8096 23 1 1.1565 -9.8788 3.5901 24 6 1.0473 -3.0455 5.3740 25 6 -0.3498 -2.4596 5.5881 26 6 1.3739 -4.0143 6.5123 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.6642 -0.4277 -0.8467 35 1 5.9075 -1.4324 -0.9700 36 1 6.7562 -2.7868 0.9021 37 1 5.3608 -3.1466 2.8972 38 1 3.5115 -2.4236 4.2292 39 1 2.2830 -1.3164 3.5710 40 1 -0.7324 -4.7521 4.4328 41 1 -0.0480 -4.9621 2.8032 42 1 -1.4744 -8.2620 3.5996 43 1 1.7815 -2.2401 5.3610 44 1 -1.0837 -3.2654 5.6012 45 1 -0.3783 -1.9261 6.5382 46 1 -0.5824 -1.7693 4.7772 47 1 2.3691 -4.4319 6.3598 48 1 1.3448 -3.4813 7.4626 49 1 0.6399 -4.8201 6.5255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523283946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:30 Heat of formation + Delta-G solvation = -78.946663 kcal Electronic energy + Delta-G solvation = -28128.711996 eV Core-core repulsion = 24441.057413 eV Total energy + Delta-G solvation = -3687.654583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.52632 -40.50626 -38.59839 -37.45554 -34.98672 -34.37479 -33.38679 -32.37708 -30.91711 -29.87905 -28.20434 -28.07371 -27.76137 -24.89658 -24.29440 -22.94126 -22.29257 -21.64982 -19.67209 -18.94080 -18.58799 -18.15807 -17.15643 -16.97907 -16.56832 -16.36613 -16.08133 -15.75590 -15.50259 -14.95106 -14.84367 -14.75820 -14.38002 -14.23683 -13.99198 -13.89105 -13.59448 -13.34177 -13.24104 -13.19178 -13.09752 -12.96075 -12.83115 -12.76580 -12.71790 -12.51354 -12.26510 -12.20524 -12.06292 -12.05977 -11.68739 -11.62763 -11.51567 -11.44394 -10.60898 -10.58137 -9.73455 -9.36314 -9.00963 -8.18226 -6.30179 0.39817 0.56407 1.34899 1.37487 1.48943 1.93861 2.29931 2.33215 2.47531 2.92374 3.11248 3.72199 3.82878 3.88253 3.91641 3.97504 4.06027 4.10902 4.21269 4.30120 4.33794 4.39483 4.43773 4.55104 4.65577 4.67109 4.70606 4.82027 4.83556 4.86029 4.87824 4.96562 5.01598 5.05876 5.12272 5.14414 5.17340 5.26031 5.27376 5.44073 5.44651 5.53660 5.59507 5.63217 5.66919 5.93978 5.95033 6.13732 6.55952 6.76845 6.89845 7.33896 7.58768 8.89314 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.004017 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.135023 B = 6968.535789 C = 7575.131755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 C -0.168 4.168 4 O -0.327 6.327 5 C 0.129 3.871 6 C -0.219 4.219 7 C -0.086 4.086 8 C -0.164 4.164 9 C -0.085 4.085 10 C -0.120 4.120 11 C -0.079 4.079 12 C 0.503 3.497 13 O -0.593 6.593 14 N -0.599 5.599 15 C 0.267 3.733 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.285 1.285 24 C 0.124 3.876 25 C -0.155 4.155 26 C -0.151 4.151 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.023 0.977 41 H -0.014 1.014 42 H 0.264 0.736 43 H 0.112 0.888 44 H 0.038 0.962 45 H 0.097 0.903 46 H 0.052 0.948 47 H 0.044 0.956 48 H 0.090 0.910 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 19.993 -2.064 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 C -0.225 4.225 4 O -0.242 6.242 5 C 0.083 3.917 6 C -0.237 4.237 7 C -0.103 4.103 8 C -0.182 4.182 9 C -0.103 4.103 10 C -0.121 4.121 11 C -0.119 4.119 12 C 0.292 3.708 13 O -0.473 6.473 14 N -0.331 5.331 15 C 0.146 3.854 16 C -0.561 4.561 17 H 0.072 0.928 18 C -0.193 4.193 19 N -0.573 5.573 20 Si 0.787 3.213 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.211 1.211 24 C 0.022 3.978 25 C -0.213 4.213 26 C -0.208 4.208 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.041 0.959 41 H 0.004 0.996 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.057 0.943 45 H 0.116 0.884 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.109 0.891 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.497 19.585 -2.468 21.905 hybrid contribution -0.207 -1.457 -0.189 1.483 sum 9.290 18.128 -2.658 20.542 Atomic orbital electron populations 1.21873 0.92241 1.02088 1.04210 1.22677 0.95824 0.93618 0.86698 1.22311 1.01899 0.94203 1.04113 1.86089 1.29653 1.68420 1.40021 1.18977 0.84740 0.93344 0.94609 1.21481 0.96782 1.07002 0.98477 1.21285 0.94812 0.95293 0.98951 1.21309 1.01414 1.01531 0.93957 1.21116 0.92761 0.97031 0.99416 1.18933 0.96034 1.01101 0.95997 1.20484 0.96897 0.96837 0.97670 1.21128 0.81147 0.85272 0.83226 1.90623 1.70436 1.58211 1.28074 1.48345 1.37417 1.31950 1.15341 1.18588 0.88962 0.83591 0.94285 1.21693 1.01436 0.92460 1.40465 0.92753 1.25820 0.95559 1.02499 0.95464 1.70075 1.13651 1.27055 1.46503 0.85449 0.78871 0.79041 0.77966 1.18998 1.19528 1.21113 1.21407 0.99161 0.94553 0.82707 1.22106 0.95841 1.00380 1.02978 1.22073 1.01290 0.99520 0.97960 0.91401 0.87784 0.94297 0.91222 0.91951 0.88780 0.91532 0.83724 0.83002 0.83608 0.84832 0.86296 0.87008 0.95903 0.99592 0.92699 0.87008 0.94334 0.88382 0.92889 0.93680 0.89112 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.56 71.98 0.69 -2.52 16 2 C 0.07 1.56 2.84 30.59 0.09 1.65 16 3 C -0.17 -2.74 9.17 71.98 0.66 -2.08 16 4 O -0.33 -10.26 8.94 -92.41 -0.83 -11.09 16 5 C 0.13 4.08 6.57 22.51 0.15 4.23 16 6 C -0.22 -5.70 8.25 22.37 0.18 -5.52 16 7 C -0.09 -1.98 10.04 22.26 0.22 -1.76 16 8 C -0.16 -4.05 10.04 22.28 0.22 -3.82 16 9 C -0.09 -2.49 9.68 22.25 0.22 -2.28 16 10 C -0.12 -3.93 4.39 -19.77 -0.09 -4.02 16 11 C -0.08 -2.58 3.86 29.10 0.11 -2.46 16 12 C 0.50 22.62 7.67 87.66 0.67 23.29 16 13 O -0.59 -33.07 15.61 -3.04 -0.05 -33.12 16 14 N -0.60 -26.71 2.39 -802.14 -1.91 -28.63 16 15 C 0.27 14.95 4.60 85.63 0.39 15.34 16 16 C -0.52 -30.58 7.83 25.60 0.20 -30.38 16 17 H 0.05 3.16 7.63 -2.91 -0.02 3.13 16 18 C 0.00 0.27 5.46 84.65 0.46 0.73 16 19 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 20 Si 0.96 46.14 29.54 68.60 2.03 48.17 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 24 C 0.12 4.06 3.17 44.99 0.14 4.20 16 25 C -0.16 -4.57 9.17 71.98 0.66 -3.91 16 26 C -0.15 -4.87 8.47 71.98 0.61 -4.26 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.60 6.31 -2.39 -0.02 1.58 16 31 H 0.06 1.03 6.92 -2.38 -0.02 1.01 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.15 3.03 5.43 -2.91 -0.02 3.02 16 35 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.12 3.14 7.70 -2.38 -0.02 3.12 16 39 H 0.11 3.22 7.34 -2.39 -0.02 3.20 16 40 H 0.02 1.31 6.43 -2.39 -0.02 1.29 16 41 H -0.01 -0.93 7.42 -2.39 -0.02 -0.94 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.11 2.84 5.76 -2.39 -0.01 2.82 16 44 H 0.04 1.35 6.66 -2.39 -0.02 1.34 16 45 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.04 1.74 6.92 -2.39 -0.02 1.72 16 Total: -1.00 -80.17 392.13 6.04 -74.13 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.92 Total: 21.81 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 5.60 Total: -13.57 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.63 Total: -86.32 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.87 Total: -44.21 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -80.17 6.04 -74.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523283946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.821 kcal (2) G-P(sol) polarization free energy of solvation -80.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds