Wall clock time and date at job start Tue Mar 31 2020 12:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47240 * 2 1 4 4 N 1.46901 * 109.47239 * 120.00155 * 2 1 3 5 5 C 1.46897 * 111.00347 * 167.09578 * 4 2 1 6 6 C 1.50706 * 109.46801 * 293.95531 * 5 4 2 7 7 H 1.07995 * 120.00416 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99861 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99663 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99682 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47646 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47147 * 119.99979 * 10 8 6 13 13 H 1.48510 * 109.46778 * 239.99377 * 10 8 6 14 14 C 1.46897 * 111.00015 * 291.05172 * 4 2 1 15 15 C 1.50695 * 109.47456 * 164.14387 * 14 4 2 16 16 C 1.38244 * 119.96389 * 275.67993 * 15 14 4 17 17 C 1.38305 * 120.40161 * 179.76340 * 16 15 14 18 18 C 1.38379 * 119.92211 * 0.03635 * 17 16 15 19 19 C 1.39694 * 119.46850 * 0.32509 * 18 17 16 20 20 C 1.37937 * 120.41895 * 359.48323 * 19 18 17 21 21 O 1.35820 * 117.34608 * 179.23797 * 19 18 17 22 22 C 1.40159 * 120.20178 * 83.25069 * 21 19 18 23 23 C 1.51555 * 116.62003 * 281.13222 * 22 21 19 24 24 C 1.53621 * 110.57528 * 71.73135 * 23 22 21 25 25 C 1.54639 * 108.16787 * 255.69582 * 24 23 22 26 26 O 1.35595 * 121.22883 * 181.15934 * 18 17 16 27 27 H 1.08998 * 109.47295 * 306.14715 * 1 2 3 28 28 H 1.08997 * 109.46916 * 66.15024 * 1 2 3 29 29 H 1.09002 * 109.47005 * 186.14760 * 1 2 3 30 30 H 1.09004 * 109.47203 * 240.00128 * 2 1 3 31 31 H 1.08996 * 109.47323 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47554 * 300.00291 * 3 2 1 33 33 H 1.09004 * 109.46918 * 59.99953 * 3 2 1 34 34 H 1.08996 * 109.47135 * 53.95156 * 5 4 2 35 35 H 1.08994 * 109.47318 * 173.95858 * 5 4 2 36 36 H 0.97003 * 119.99296 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.47434 * 44.13998 * 14 4 2 38 38 H 1.09003 * 109.47144 * 284.14282 * 14 4 2 39 39 H 1.08005 * 119.80295 * 359.78496 * 16 15 14 40 40 H 1.08007 * 120.03968 * 179.97438 * 17 16 15 41 41 H 1.07996 * 120.14432 * 180.36478 * 20 19 18 42 42 H 1.08991 * 108.01979 * 159.33422 * 22 21 19 43 43 H 1.08999 * 108.01824 * 42.93198 * 22 21 19 44 44 H 1.09000 * 109.25570 * 192.01239 * 23 22 21 45 45 H 1.08995 * 109.25841 * 311.44868 * 23 22 21 46 46 H 1.09004 * 109.72527 * 15.36200 * 24 23 22 47 47 H 1.08996 * 109.73003 * 136.02354 * 24 23 22 48 48 H 1.08994 * 109.63749 * 297.72706 * 25 24 23 49 49 H 1.09005 * 109.63717 * 177.11457 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4555 -0.9831 1.0903 6 6 3.6835 -1.9795 -0.0172 7 1 2.8457 -2.3591 -0.5831 8 6 4.9618 -2.4071 -0.3074 9 7 5.9821 -1.9452 0.3820 10 14 5.2445 -3.6415 -1.6806 11 1 3.9430 -4.0018 -2.2981 12 1 6.1321 -3.0427 -2.7095 13 1 5.8833 -4.8618 -1.1254 14 6 1.7308 0.0856 2.4114 15 6 1.8816 -0.7975 3.6232 16 6 0.8300 -1.5975 4.0297 17 6 0.9602 -2.4151 5.1376 18 6 2.1489 -2.4337 5.8459 19 6 3.2061 -1.6179 5.4358 20 6 3.0733 -0.8069 4.3279 21 8 4.3472 -1.6585 6.1713 22 6 5.2965 -2.6644 5.9449 23 6 5.0001 -4.0250 6.5430 24 6 3.8544 -4.7107 5.7833 25 6 2.5775 -4.6185 6.6507 26 8 2.3135 -3.2422 6.9219 27 1 -0.3634 0.6062 0.8298 28 1 -0.3633 0.4155 -0.9399 29 1 -0.3633 -1.0218 0.1101 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9966 -0.0633 0.8685 35 1 3.8148 -1.3981 2.0319 36 1 6.8814 -2.2458 0.1776 37 1 0.7105 0.4665 2.3641 38 1 2.4275 0.9209 2.4816 39 1 -0.0987 -1.5844 3.4786 40 1 0.1348 -3.0375 5.4503 41 1 3.8955 -0.1823 4.0113 42 1 6.2518 -2.3221 6.3426 43 1 5.4078 -2.7866 4.8675 44 1 5.8936 -4.6464 6.4832 45 1 4.7164 -3.9040 7.5884 46 1 3.6898 -4.2055 4.8315 47 1 4.1043 -5.7568 5.6066 48 1 2.7317 -5.1535 7.5876 49 1 1.7360 -5.0535 6.1112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556140079.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:29 Heat of formation + Delta-G solvation = -65.302340 kcal Electronic energy + Delta-G solvation = -28544.326022 eV Core-core repulsion = 24857.263102 eV Total energy + Delta-G solvation = -3687.062921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.84177 -39.83315 -38.89157 -38.15155 -35.01091 -34.86455 -32.98973 -31.54820 -31.08540 -29.52386 -28.69700 -27.95146 -26.29091 -25.03712 -24.08238 -23.05831 -23.03143 -21.63143 -20.31770 -18.92465 -18.36097 -18.18679 -17.76683 -17.18394 -16.83205 -16.52133 -16.27314 -15.89083 -15.60578 -15.45864 -15.12986 -14.93302 -14.66623 -14.56512 -14.06894 -14.00131 -13.67619 -13.29094 -13.27776 -13.09656 -12.94376 -12.73177 -12.66796 -12.55276 -12.47147 -12.32972 -12.29176 -12.07661 -11.97601 -11.72405 -11.67942 -11.41075 -11.23694 -11.12456 -10.59929 -10.47558 -9.78708 -9.32957 -8.89540 -8.18406 -6.26342 0.11743 0.27016 1.36935 1.38026 1.50816 2.26794 2.39890 2.58239 3.03417 3.14475 3.47365 3.69290 3.75398 3.88267 3.92861 4.01331 4.15346 4.23843 4.30815 4.32112 4.37953 4.40227 4.40523 4.49252 4.56969 4.62494 4.64793 4.71804 4.80584 4.84414 4.87013 4.89277 4.94669 5.05130 5.06876 5.13355 5.20552 5.25846 5.29482 5.31747 5.36875 5.49039 5.58589 5.61606 5.70965 5.71944 6.11732 6.32133 6.45601 6.70416 6.80519 6.91048 7.42125 8.92217 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010501 B = 0.005125 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.659236 B = 5461.942180 C = 7049.431640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 C -0.173 4.173 4 N -0.526 5.526 5 C 0.208 3.792 6 C -0.514 4.514 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.093 3.907 15 C -0.063 4.063 16 C -0.087 4.087 17 C -0.131 4.131 18 C 0.063 3.937 19 C 0.065 3.935 20 C -0.124 4.124 21 O -0.342 6.342 22 C 0.066 3.934 23 C -0.142 4.142 24 C -0.166 4.166 25 C 0.060 3.940 26 O -0.333 6.333 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.064 0.936 34 H -0.038 1.038 35 H 0.007 0.993 36 H 0.261 0.739 37 H 0.107 0.893 38 H 0.025 0.975 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.018 0.982 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.034 0.966 47 H 0.100 0.900 48 H 0.132 0.868 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.820 -2.351 10.142 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.035 4.035 3 C -0.231 4.231 4 N -0.249 5.249 5 C 0.082 3.918 6 C -0.552 4.552 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.207 1.207 14 C -0.034 4.034 15 C -0.064 4.064 16 C -0.105 4.105 17 C -0.150 4.150 18 C 0.019 3.981 19 C 0.022 3.978 20 C -0.143 4.143 21 O -0.259 6.259 22 C -0.009 4.009 23 C -0.179 4.179 24 C -0.204 4.204 25 C -0.013 4.013 26 O -0.250 6.250 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.083 0.917 34 H -0.021 1.021 35 H 0.025 0.975 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.043 0.957 39 H 0.172 0.828 40 H 0.175 0.825 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.036 0.964 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.053 0.947 47 H 0.119 0.881 48 H 0.150 0.850 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.836 -2.650 10.496 14.626 hybrid contribution 1.700 0.129 -1.225 2.099 sum -8.136 -2.522 9.272 12.590 Atomic orbital electron populations 1.21762 0.92490 1.02165 1.02217 1.21702 0.96492 0.92012 0.93283 1.22352 0.99912 0.98214 1.02669 1.62295 1.17551 1.43933 1.01134 1.19368 0.83421 0.93275 0.95727 1.21491 0.92461 1.24440 1.16837 0.92156 1.25817 0.95906 0.98655 0.99114 1.70106 0.99310 1.45640 1.42288 0.85479 0.78383 0.78648 0.79024 1.18652 1.20584 1.20731 1.21081 1.01900 0.92624 0.87840 1.19866 0.92912 0.98192 0.95420 1.21110 0.99382 0.94506 0.95522 1.21514 0.97293 1.00932 0.95228 1.19091 0.93443 0.94759 0.90791 1.19032 0.86431 0.99847 0.92496 1.20950 0.98507 1.01019 0.93835 1.85098 1.29491 1.51264 1.60076 1.22108 0.90530 0.89295 0.98974 1.21985 0.99848 0.94996 1.01091 1.22780 0.96657 1.02696 0.98270 1.23549 0.95982 0.79918 1.01870 1.86001 1.90799 1.20098 1.28130 0.91656 0.91154 0.92491 0.91920 0.95706 0.90839 0.91719 1.02051 0.97523 0.93053 0.87468 0.95720 0.82844 0.82537 0.87647 0.87312 0.96351 0.88151 0.89667 0.94673 0.88135 0.85041 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.08 71.98 0.65 -2.77 16 2 C 0.07 2.65 2.77 44.91 0.12 2.77 16 3 C -0.17 -5.73 8.45 71.98 0.61 -5.12 16 4 N -0.53 -21.66 4.37 -880.08 -3.85 -25.51 16 5 C 0.21 10.97 4.46 85.56 0.38 11.35 16 6 C -0.51 -28.99 8.33 25.60 0.21 -28.78 16 7 H 0.06 3.36 7.21 -2.91 -0.02 3.33 16 8 C 0.00 0.16 5.46 84.66 0.46 0.62 16 9 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 10 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.09 3.24 3.73 85.56 0.32 3.56 16 15 C -0.06 -2.25 4.93 -19.81 -0.10 -2.35 16 16 C -0.09 -2.59 9.70 22.29 0.22 -2.37 16 17 C -0.13 -3.75 9.97 22.32 0.22 -3.53 16 18 C 0.06 2.09 4.74 22.66 0.11 2.20 16 19 C 0.07 2.47 5.36 22.55 0.12 2.59 16 20 C -0.12 -4.92 8.26 22.25 0.18 -4.73 16 21 O -0.34 -12.80 9.67 -67.84 -0.66 -13.46 16 22 C 0.07 2.09 5.93 71.51 0.42 2.52 16 23 C -0.14 -3.48 5.66 30.33 0.17 -3.31 16 24 C -0.17 -4.22 5.67 31.36 0.18 -4.04 16 25 C 0.06 1.34 6.42 72.54 0.47 1.81 16 26 O -0.33 -9.87 9.36 -72.20 -0.68 -10.55 16 27 H 0.06 1.48 6.64 -2.39 -0.02 1.47 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 2.64 6.61 -2.38 -0.02 2.62 16 31 H 0.02 0.98 6.70 -2.39 -0.02 0.96 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 1.90 6.66 -2.38 -0.02 1.88 16 34 H -0.04 -2.21 6.55 -2.39 -0.02 -2.22 16 35 H 0.01 0.39 6.14 -2.39 -0.01 0.37 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.11 2.99 6.18 -2.38 -0.01 2.98 16 38 H 0.02 0.91 7.05 -2.39 -0.02 0.90 16 39 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.11 4.55 8.04 -2.91 -0.02 4.53 16 42 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.02 0.68 7.81 -2.39 -0.02 0.67 16 44 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.08 1.96 7.50 -2.39 -0.02 1.94 16 46 H 0.03 1.17 6.57 -2.38 -0.02 1.16 16 47 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -69.35 375.70 2.81 -66.53 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.93 Total: 22.10 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 4.75 Total: -29.57 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.56 Total: -81.65 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.33 Total: -24.00 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.35 2.81 -66.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556140079.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.230 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds