Wall clock time and date at job start Tue Mar 31 2020 12:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 H 1.08994 * 109.47263 * 305.77651 * 3 2 1 5 5 O 1.42899 * 109.46869 * 65.77904 * 3 2 1 6 6 C 1.35910 * 116.99719 * 263.98639 * 5 3 2 7 7 C 1.38756 * 120.05373 * 357.68577 * 6 5 3 8 8 C 1.38122 * 119.94175 * 179.71815 * 7 6 5 9 9 C 1.38285 * 120.05258 * 0.27862 * 8 7 6 10 10 C 1.38243 * 120.11880 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.97450 * 179.97438 * 10 9 8 12 12 C 1.38167 * 120.05201 * 359.97438 * 10 9 8 13 13 C 1.50699 * 109.47104 * 185.77241 * 3 2 1 14 14 O 1.21285 * 120.00273 * 249.80899 * 13 3 2 15 15 N 1.34776 * 119.99860 * 69.80753 * 13 3 2 16 16 C 1.46501 * 120.00162 * 184.76146 * 15 13 3 17 17 C 1.50694 * 109.47043 * 90.00308 * 16 15 13 18 18 H 1.08005 * 120.00269 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47015 * 90.00253 * 21 19 17 23 23 H 1.48508 * 109.46702 * 209.99461 * 21 19 17 24 24 H 1.48494 * 109.47282 * 329.99834 * 21 19 17 25 25 C 1.46498 * 119.99997 * 4.76658 * 15 13 3 26 26 C 1.52997 * 109.47400 * 121.00188 * 25 15 13 27 27 C 1.53000 * 109.47094 * 240.99975 * 25 15 13 28 28 H 1.09001 * 109.47074 * 59.99719 * 1 2 3 29 29 H 1.08997 * 109.46517 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46626 * 299.99713 * 1 2 3 31 31 H 1.09007 * 109.47145 * 240.00101 * 2 1 3 32 32 H 1.09001 * 109.47074 * 120.00281 * 2 1 3 33 33 H 1.07994 * 120.02658 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.96737 * 180.29973 * 8 7 6 35 35 H 1.08008 * 119.94100 * 179.97438 * 9 8 7 36 36 H 1.09007 * 109.46546 * 90.00532 * 11 10 9 37 37 H 1.09000 * 109.47024 * 210.00062 * 11 10 9 38 38 H 1.08992 * 109.47556 * 330.00598 * 11 10 9 39 39 H 1.07996 * 120.02921 * 180.02562 * 12 10 9 40 40 H 1.08999 * 109.47387 * 210.00299 * 16 15 13 41 41 H 1.09004 * 109.46857 * 330.00070 * 16 15 13 42 42 H 0.97001 * 120.00565 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47334 * 1.00080 * 25 15 13 44 44 H 1.09006 * 109.47515 * 59.99652 * 26 25 15 45 45 H 1.09008 * 109.47476 * 179.97438 * 26 25 15 46 46 H 1.09005 * 109.47135 * 300.00153 * 26 25 15 47 47 H 1.09003 * 109.47170 * 60.00320 * 27 25 15 48 48 H 1.08995 * 109.47128 * 179.97438 * 27 25 15 49 49 H 1.09003 * 109.47315 * 299.99882 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5947 1.9853 -0.8337 5 8 1.6776 2.0758 1.2287 6 6 0.5419 2.8223 1.2265 7 6 -0.1824 2.9820 0.0538 8 6 -1.3395 3.7364 0.0556 9 6 -1.7730 4.3368 1.2234 10 6 -1.0503 4.1835 2.3919 11 6 -1.5254 4.8398 3.6625 12 6 0.1072 3.4291 2.3957 13 6 3.5402 1.4449 -0.1429 14 8 4.2380 1.7752 0.7925 15 7 4.1065 1.0801 -1.3102 16 6 5.5642 0.9817 -1.4181 17 6 6.0013 -0.4151 -1.0595 18 1 5.2668 -1.1556 -0.7789 19 6 7.3391 -0.7478 -1.0886 20 7 8.2336 0.1539 -1.4298 21 14 7.8809 -2.4792 -0.6434 22 1 7.8999 -3.3217 -1.8661 23 1 9.2423 -2.4350 -0.0516 24 1 6.9315 -3.0571 0.3413 25 6 3.2644 0.7820 -2.4713 26 6 3.6329 1.7195 -3.6229 27 6 3.4868 -0.6687 -2.9036 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.1560 2.5136 -0.8585 34 1 -1.9061 3.8570 -0.8558 35 1 -2.6778 4.9266 1.2226 36 1 -2.1875 4.1588 4.1975 37 1 -0.6673 5.0801 4.2902 38 1 -2.0651 5.7549 3.4191 39 1 0.6712 3.3092 3.3088 40 1 5.8690 1.2067 -2.4401 41 1 6.0279 1.6941 -0.7356 42 1 9.1747 -0.0802 -1.4507 43 1 2.2168 0.9257 -2.2068 44 1 4.6806 1.5758 -3.8874 45 1 3.0066 1.4973 -4.4870 46 1 3.4745 2.7530 -3.3149 47 1 3.2242 -1.3367 -2.0833 48 1 2.8599 -0.8907 -3.7672 49 1 4.5345 -0.8125 -3.1682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566055643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:12 Heat of formation + Delta-G solvation = -52.632337 kcal Electronic energy + Delta-G solvation = -28137.899801 eV Core-core repulsion = 24451.386293 eV Total energy + Delta-G solvation = -3686.513508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70448 -39.19756 -37.53557 -35.98823 -33.69250 -32.77066 -32.60307 -30.90301 -30.24700 -28.35590 -27.11620 -26.88003 -26.29364 -22.98249 -22.61833 -22.44115 -21.56005 -20.48547 -18.38735 -18.22975 -16.68263 -16.45491 -16.05904 -15.79107 -15.63548 -14.96745 -14.52917 -14.30214 -14.22107 -13.99069 -13.71548 -13.52312 -13.28834 -13.25745 -12.87810 -12.61643 -12.42789 -12.37469 -12.15567 -11.94000 -11.81495 -11.68497 -11.66071 -11.48310 -11.24699 -11.15140 -10.96370 -10.93655 -10.75701 -10.62272 -10.45654 -10.35403 -10.04811 -9.57026 -8.89633 -8.84786 -8.43468 -8.10652 -7.71429 -6.04888 -4.08595 1.24119 1.41717 2.99089 3.25116 3.28950 3.36633 3.41148 3.68335 3.99800 4.43370 4.62094 4.70850 4.74836 4.84202 4.89562 5.02627 5.12632 5.18243 5.22435 5.27032 5.29513 5.39931 5.42119 5.45358 5.47984 5.57001 5.60147 5.67434 5.76697 5.89815 5.94341 5.99464 6.06200 6.08363 6.18619 6.21105 6.30765 6.33299 6.36323 6.50220 6.53623 6.72042 6.91007 7.04802 7.44095 7.45116 7.55105 7.91741 8.22677 8.34628 8.87580 9.02835 9.55566 11.03298 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019123 B = 0.003396 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.869297 B = 8243.340078 C = 8670.960824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.144 4.144 3 C 0.064 3.936 4 H 0.095 0.905 5 O -0.280 6.280 6 C 0.145 3.855 7 C -0.220 4.220 8 C -0.075 4.075 9 C -0.167 4.167 10 C -0.049 4.049 11 C -0.114 4.114 12 C -0.156 4.156 13 C 0.508 3.492 14 O -0.519 6.519 15 N -0.587 5.587 16 C 0.246 3.754 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.128 3.872 26 C -0.163 4.163 27 C -0.160 4.160 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.130 0.870 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.377 5.106 -0.394 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C 0.004 3.996 4 H 0.112 0.888 5 O -0.192 6.192 6 C 0.099 3.901 7 C -0.239 4.239 8 C -0.093 4.093 9 C -0.185 4.185 10 C -0.049 4.049 11 C -0.171 4.171 12 C -0.175 4.175 13 C 0.292 3.708 14 O -0.395 6.395 15 N -0.321 5.321 16 C 0.128 3.872 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C 0.024 3.976 26 C -0.221 4.221 27 C -0.218 4.218 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.148 0.852 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.626 5.273 0.247 21.291 hybrid contribution 0.374 -1.065 -0.111 1.134 sum -20.252 4.208 0.136 20.685 Atomic orbital electron populations 1.21902 0.94884 1.02173 1.02016 1.22099 0.96638 0.94464 1.04996 1.22540 0.95353 0.94870 0.86852 0.88793 1.86257 1.38241 1.60891 1.33804 1.19112 0.86106 0.90827 0.94102 1.21308 0.98719 1.05971 0.97863 1.20866 0.95164 0.95319 0.97983 1.20870 1.01241 1.03799 0.92625 1.19674 0.93634 0.95924 0.95638 1.20800 1.01692 1.00066 0.94509 1.20306 0.98324 1.01762 0.97112 1.19875 0.88099 0.79066 0.83755 1.90703 1.63476 1.46823 1.38449 1.48263 1.09634 1.65739 1.08477 1.19292 0.72134 0.97775 0.98008 1.21428 0.92245 0.96278 1.46091 0.92290 1.24924 0.96489 0.97411 0.95273 1.69926 1.01586 1.33585 1.48219 0.86543 0.78097 0.84488 0.78585 1.20685 1.21148 1.19900 1.21106 0.93715 0.95861 0.86936 1.22174 1.03353 0.99048 0.97556 1.22206 1.04327 0.94956 1.00282 0.92561 0.92089 0.92292 0.88931 0.90028 0.85227 0.85956 0.86229 0.90999 0.91291 0.91427 0.85189 0.94492 0.93889 0.92744 0.91020 0.90996 0.92092 0.92870 0.92534 0.93059 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.51 37.16 0.32 -1.39 16 2 C -0.14 -2.04 5.23 -26.73 -0.14 -2.18 16 3 C 0.06 1.05 1.70 -27.88 -0.05 1.00 16 4 H 0.09 1.31 4.13 -51.93 -0.21 1.09 16 5 O -0.28 -4.95 9.20 -39.18 -0.36 -5.31 16 6 C 0.14 2.12 5.39 -39.22 -0.21 1.91 16 7 C -0.22 -2.69 7.35 -39.43 -0.29 -2.98 16 8 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 9 C -0.17 -1.69 9.70 -39.56 -0.38 -2.07 16 10 C -0.05 -0.53 5.88 -104.65 -0.62 -1.15 16 11 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 12 C -0.16 -2.09 9.64 -39.43 -0.38 -2.47 16 13 C 0.51 10.94 7.02 -10.99 -0.08 10.86 16 14 O -0.52 -13.81 16.08 -14.16 -0.23 -14.04 16 15 N -0.59 -12.16 2.39 -167.47 -0.40 -12.56 16 16 C 0.25 6.27 4.66 -5.20 -0.02 6.25 16 17 C -0.52 -14.24 7.83 -34.44 -0.27 -14.51 16 18 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 21 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.13 2.01 2.34 -67.93 -0.16 1.85 16 26 C -0.16 -2.31 9.15 37.16 0.34 -1.97 16 27 C -0.16 -2.47 8.18 37.16 0.30 -2.17 16 28 H 0.06 0.54 7.00 -51.93 -0.36 0.17 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.71 6.41 -51.93 -0.33 0.38 16 31 H 0.09 1.26 4.78 -51.92 -0.25 1.01 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.13 1.43 4.65 -52.49 -0.24 1.19 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 39 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.04 0.94 6.37 -51.93 -0.33 0.61 16 41 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 0.93 4.80 -51.93 -0.25 0.68 16 44 H 0.07 1.16 6.63 -51.93 -0.34 0.82 16 45 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.90 6.90 -51.93 -0.36 0.54 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -33.05 380.99 -8.91 -41.96 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.61 Total: 2.23 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.77 Total: -9.14 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.34 Total: -38.03 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.59 Total: -19.34 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.05 -8.91 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566055643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.673 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds