Wall clock time and date at job start Tue Mar 31 2020 12:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 H 1.08994 * 109.47263 * 305.77651 * 3 2 1 5 5 O 1.42899 * 109.46869 * 65.77904 * 3 2 1 6 6 C 1.35910 * 116.99719 * 263.98639 * 5 3 2 7 7 C 1.38756 * 120.05373 * 357.68577 * 6 5 3 8 8 C 1.38122 * 119.94175 * 179.71815 * 7 6 5 9 9 C 1.38285 * 120.05258 * 0.27862 * 8 7 6 10 10 C 1.38243 * 120.11880 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.97450 * 179.97438 * 10 9 8 12 12 C 1.38167 * 120.05201 * 359.97438 * 10 9 8 13 13 C 1.50699 * 109.47104 * 185.77241 * 3 2 1 14 14 O 1.21285 * 120.00273 * 249.80899 * 13 3 2 15 15 N 1.34776 * 119.99860 * 69.80753 * 13 3 2 16 16 C 1.46501 * 120.00162 * 184.76146 * 15 13 3 17 17 C 1.50694 * 109.47043 * 90.00308 * 16 15 13 18 18 H 1.08005 * 120.00269 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47015 * 90.00253 * 21 19 17 23 23 H 1.48508 * 109.46702 * 209.99461 * 21 19 17 24 24 H 1.48494 * 109.47282 * 329.99834 * 21 19 17 25 25 C 1.46498 * 119.99997 * 4.76658 * 15 13 3 26 26 C 1.52997 * 109.47400 * 121.00188 * 25 15 13 27 27 C 1.53000 * 109.47094 * 240.99975 * 25 15 13 28 28 H 1.09001 * 109.47074 * 59.99719 * 1 2 3 29 29 H 1.08997 * 109.46517 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46626 * 299.99713 * 1 2 3 31 31 H 1.09007 * 109.47145 * 240.00101 * 2 1 3 32 32 H 1.09001 * 109.47074 * 120.00281 * 2 1 3 33 33 H 1.07994 * 120.02658 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.96737 * 180.29973 * 8 7 6 35 35 H 1.08008 * 119.94100 * 179.97438 * 9 8 7 36 36 H 1.09007 * 109.46546 * 90.00532 * 11 10 9 37 37 H 1.09000 * 109.47024 * 210.00062 * 11 10 9 38 38 H 1.08992 * 109.47556 * 330.00598 * 11 10 9 39 39 H 1.07996 * 120.02921 * 180.02562 * 12 10 9 40 40 H 1.08999 * 109.47387 * 210.00299 * 16 15 13 41 41 H 1.09004 * 109.46857 * 330.00070 * 16 15 13 42 42 H 0.97001 * 120.00565 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47334 * 1.00080 * 25 15 13 44 44 H 1.09006 * 109.47515 * 59.99652 * 26 25 15 45 45 H 1.09008 * 109.47476 * 179.97438 * 26 25 15 46 46 H 1.09005 * 109.47135 * 300.00153 * 26 25 15 47 47 H 1.09003 * 109.47170 * 60.00320 * 27 25 15 48 48 H 1.08995 * 109.47128 * 179.97438 * 27 25 15 49 49 H 1.09003 * 109.47315 * 299.99882 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5947 1.9853 -0.8337 5 8 1.6776 2.0758 1.2287 6 6 0.5419 2.8223 1.2265 7 6 -0.1824 2.9820 0.0538 8 6 -1.3395 3.7364 0.0556 9 6 -1.7730 4.3368 1.2234 10 6 -1.0503 4.1835 2.3919 11 6 -1.5254 4.8398 3.6625 12 6 0.1072 3.4291 2.3957 13 6 3.5402 1.4449 -0.1429 14 8 4.2380 1.7752 0.7925 15 7 4.1065 1.0801 -1.3102 16 6 5.5642 0.9817 -1.4181 17 6 6.0013 -0.4151 -1.0595 18 1 5.2668 -1.1556 -0.7789 19 6 7.3391 -0.7478 -1.0886 20 7 8.2336 0.1539 -1.4298 21 14 7.8809 -2.4792 -0.6434 22 1 7.8999 -3.3217 -1.8661 23 1 9.2423 -2.4350 -0.0516 24 1 6.9315 -3.0571 0.3413 25 6 3.2644 0.7820 -2.4713 26 6 3.6329 1.7195 -3.6229 27 6 3.4868 -0.6687 -2.9036 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.1560 2.5136 -0.8585 34 1 -1.9061 3.8570 -0.8558 35 1 -2.6778 4.9266 1.2226 36 1 -2.1875 4.1588 4.1975 37 1 -0.6673 5.0801 4.2902 38 1 -2.0651 5.7549 3.4191 39 1 0.6712 3.3092 3.3088 40 1 5.8690 1.2067 -2.4401 41 1 6.0279 1.6941 -0.7356 42 1 9.1747 -0.0802 -1.4507 43 1 2.2168 0.9257 -2.2068 44 1 4.6806 1.5758 -3.8874 45 1 3.0066 1.4973 -4.4870 46 1 3.4745 2.7530 -3.3149 47 1 3.2242 -1.3367 -2.0833 48 1 2.8599 -0.8907 -3.7672 49 1 4.5345 -0.8125 -3.1682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566055643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:11 Heat of formation + Delta-G solvation = -71.146047 kcal Electronic energy + Delta-G solvation = -28138.702616 eV Core-core repulsion = 24451.386293 eV Total energy + Delta-G solvation = -3687.316323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94637 -40.54966 -38.65506 -37.64317 -35.17295 -34.50493 -33.41611 -32.50239 -31.20278 -30.03291 -28.15804 -27.94809 -27.72059 -24.91002 -23.53039 -23.45955 -22.94707 -21.64042 -19.81691 -19.40462 -18.61399 -18.07876 -17.24415 -16.92046 -16.75133 -16.67925 -15.92469 -15.87842 -15.42464 -15.04894 -14.84875 -14.64702 -14.55005 -14.26121 -14.14715 -13.97625 -13.72631 -13.50056 -13.37994 -13.15639 -13.10698 -12.90861 -12.83584 -12.74461 -12.63225 -12.52667 -12.44687 -12.28150 -12.12816 -12.04030 -11.85595 -11.70365 -11.53065 -11.43081 -10.61970 -10.55513 -9.72332 -9.51760 -9.08886 -8.21174 -6.33121 0.38269 0.51084 1.34897 1.38353 1.47419 1.60385 1.70540 2.36802 2.58655 2.81960 3.09017 3.38639 3.47811 3.71407 3.91688 3.94114 3.95827 4.13461 4.24009 4.24832 4.30287 4.37898 4.40134 4.47347 4.57338 4.70799 4.79465 4.84358 4.85798 4.89615 4.95089 4.98793 5.00359 5.05028 5.06978 5.10037 5.19748 5.26331 5.28753 5.40866 5.41308 5.51521 5.57773 5.62701 5.67347 5.81521 5.90599 6.08004 6.41531 6.67161 6.75338 7.24106 7.39888 8.86644 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019123 B = 0.003396 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.869297 B = 8243.340078 C = 8670.960824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.079 3.921 4 H 0.125 0.875 5 O -0.316 6.316 6 C 0.113 3.887 7 C -0.223 4.223 8 C -0.071 4.071 9 C -0.163 4.163 10 C -0.051 4.051 11 C -0.114 4.114 12 C -0.182 4.182 13 C 0.494 3.506 14 O -0.587 6.587 15 N -0.587 5.587 16 C 0.264 3.736 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.007 3.993 20 N -0.930 5.930 21 Si 0.962 3.038 22 H -0.261 1.261 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.119 3.881 26 C -0.159 4.159 27 C -0.155 4.155 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.033 0.967 41 H -0.011 1.011 42 H 0.265 0.735 43 H 0.110 0.890 44 H 0.042 0.958 45 H 0.104 0.896 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.096 0.904 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.536 4.631 -2.293 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.019 3.981 4 H 0.143 0.857 5 O -0.229 6.229 6 C 0.068 3.932 7 C -0.241 4.241 8 C -0.088 4.088 9 C -0.181 4.181 10 C -0.052 4.052 11 C -0.170 4.170 12 C -0.201 4.201 13 C 0.281 3.719 14 O -0.468 6.468 15 N -0.319 5.319 16 C 0.143 3.857 17 C -0.566 4.566 18 H 0.075 0.925 19 C -0.192 4.192 20 N -0.570 5.570 21 Si 0.787 3.213 22 H -0.186 1.186 23 H -0.211 1.211 24 H -0.199 1.199 25 C 0.016 3.984 26 C -0.217 4.217 27 C -0.213 4.213 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.051 0.949 41 H 0.007 0.993 42 H 0.074 0.926 43 H 0.128 0.872 44 H 0.061 0.939 45 H 0.122 0.878 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.114 0.886 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.837 4.789 -1.696 25.351 hybrid contribution 1.590 -0.804 0.500 1.851 sum -23.246 3.986 -1.196 23.616 Atomic orbital electron populations 1.21852 0.91858 1.03541 1.02707 1.22105 0.99093 0.92458 1.04089 1.22421 0.90931 0.96778 0.87937 0.85745 1.86206 1.40262 1.62074 1.34346 1.19412 0.86063 0.91982 0.95756 1.21465 0.99142 1.06418 0.97116 1.21295 0.94333 0.93800 0.99421 1.21309 1.01751 1.03076 0.91958 1.20027 0.92623 0.95064 0.97447 1.20866 1.01911 1.00927 0.93296 1.20476 0.99719 1.03228 0.96667 1.20976 0.90616 0.77500 0.82817 1.90654 1.65612 1.49794 1.40711 1.48284 1.08304 1.65039 1.10235 1.18721 0.75306 0.95680 0.96007 1.21647 0.92510 0.96791 1.45650 0.92483 1.25810 0.96624 1.01579 0.95176 1.70053 1.01920 1.35689 1.49337 0.85493 0.77299 0.79676 0.78832 1.18633 1.21073 1.19883 1.21579 0.94659 0.96609 0.85505 1.22160 1.02409 0.98756 0.98375 1.22156 1.02912 0.94436 1.01798 0.89945 0.90373 0.93459 0.88075 0.92745 0.83958 0.82503 0.83120 0.89805 0.91737 0.89422 0.86643 0.94915 0.99290 0.92585 0.87193 0.93898 0.87782 0.92735 0.93197 0.88551 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.51 71.98 0.61 -2.17 16 2 C -0.14 -3.83 5.23 30.60 0.16 -3.67 16 3 C 0.08 2.58 1.70 29.85 0.05 2.63 16 4 H 0.13 3.20 4.13 -2.39 -0.01 3.19 16 5 O -0.32 -11.62 9.20 -73.69 -0.68 -12.29 16 6 C 0.11 3.29 5.39 22.51 0.12 3.42 16 7 C -0.22 -4.87 7.35 22.37 0.16 -4.71 16 8 C -0.07 -1.18 10.04 22.25 0.22 -0.95 16 9 C -0.16 -2.69 9.70 22.28 0.22 -2.48 16 10 C -0.05 -1.04 5.88 -19.88 -0.12 -1.16 16 11 C -0.11 -1.60 10.01 71.23 0.71 -0.88 16 12 C -0.18 -4.96 9.64 22.37 0.22 -4.74 16 13 C 0.49 22.33 7.02 87.66 0.61 22.95 16 14 O -0.59 -33.84 16.08 15.81 0.25 -33.59 16 15 N -0.59 -25.14 2.39 -802.16 -1.91 -27.06 16 16 C 0.26 14.30 4.66 85.63 0.40 14.69 16 17 C -0.53 -30.05 7.83 25.60 0.20 -29.85 16 18 H 0.06 3.20 7.62 -2.91 -0.02 3.17 16 19 C 0.01 0.39 5.46 84.66 0.46 0.85 16 20 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 21 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 25 C 0.12 3.53 2.34 44.99 0.11 3.64 16 26 C -0.16 -4.22 9.15 71.98 0.66 -3.56 16 27 C -0.16 -4.53 8.18 71.98 0.59 -3.94 16 28 H 0.08 1.18 7.00 -2.39 -0.02 1.17 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.06 6.41 -2.39 -0.02 1.04 16 31 H 0.10 2.56 4.78 -2.38 -0.01 2.55 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.14 2.59 4.65 -2.91 -0.01 2.58 16 34 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 38 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 39 H 0.12 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.03 1.79 6.37 -2.39 -0.02 1.77 16 41 H -0.01 -0.71 7.36 -2.38 -0.02 -0.73 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.11 2.45 4.80 -2.39 -0.01 2.44 16 44 H 0.04 1.39 6.63 -2.38 -0.02 1.37 16 45 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.05 1.51 6.90 -2.39 -0.02 1.49 16 48 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.05 1.78 6.92 -2.39 -0.02 1.76 16 Total: -1.00 -80.17 380.99 6.31 -73.86 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.94 Total: 18.17 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 5.39 Total: -9.94 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.63 Total: -83.49 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.42 Total: -45.88 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -80.17 6.31 -73.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566055643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.714 kcal (2) G-P(sol) polarization free energy of solvation -80.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds