Wall clock time and date at job start Tue Mar 31 2020 14:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35981 * 116.99994 * 2 1 4 4 C 1.38819 * 120.17682 * 0.24256 * 3 2 1 5 5 C 1.37697 * 119.93666 * 180.26503 * 4 3 2 6 6 C 1.38896 * 120.83849 * 0.02562 * 5 4 3 7 7 C 1.39224 * 118.96880 * 359.63316 * 6 5 4 8 8 C 1.37955 * 120.31479 * 0.18633 * 7 6 5 9 9 C 1.50701 * 119.85475 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46462 * 259.99772 * 9 8 7 11 11 C 1.46910 * 110.99786 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46949 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47335 * 59.99913 * 12 11 10 14 14 C 1.53007 * 109.47202 * 299.99606 * 12 11 10 15 15 C 1.50704 * 109.46912 * 179.97438 * 12 11 10 16 16 H 1.08006 * 119.99534 * 26.60739 * 15 12 11 17 17 C 1.37869 * 119.99911 * 206.60839 * 15 12 11 18 18 N 1.31520 * 120.00091 * 156.12709 * 17 15 12 19 19 Si 1.86800 * 120.00133 * 335.85168 * 17 15 12 20 20 H 1.48501 * 109.47198 * 91.52000 * 19 17 15 21 21 H 1.48501 * 109.47106 * 211.52161 * 19 17 15 22 22 H 1.48508 * 109.46997 * 331.51993 * 19 17 15 23 23 O 1.36239 * 111.21454 * 179.28526 * 6 5 4 24 24 C 1.43773 * 109.24499 * 18.87126 * 23 6 5 25 25 H 1.08996 * 110.74528 * 90.63464 * 24 23 6 26 26 C 1.52995 * 110.74711 * 213.80126 * 24 23 6 27 27 C 1.51647 * 132.11730 * 180.25595 * 5 4 3 28 28 H 1.09003 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46960 * 300.00213 * 1 2 3 30 30 H 1.08995 * 109.46882 * 60.00344 * 1 2 3 31 31 H 1.08001 * 120.03171 * 359.96112 * 4 3 2 32 32 H 1.08005 * 119.84292 * 180.16209 * 7 6 5 33 33 H 1.09003 * 109.47039 * 139.99948 * 9 8 7 34 34 H 1.08992 * 109.47218 * 19.99631 * 9 8 7 35 35 H 1.00899 * 111.00631 * 56.04565 * 10 9 8 36 36 H 1.09000 * 109.46796 * 59.99739 * 11 10 9 37 37 H 1.08995 * 109.46615 * 299.99954 * 11 10 9 38 38 H 1.09004 * 109.46999 * 189.55700 * 13 12 11 39 39 H 1.09001 * 109.47326 * 309.55355 * 13 12 11 40 40 H 1.08997 * 109.46890 * 69.55521 * 13 12 11 41 41 H 1.08996 * 109.46906 * 311.13029 * 14 12 11 42 42 H 1.08998 * 109.46842 * 71.12554 * 14 12 11 43 43 H 1.08993 * 109.47271 * 191.12841 * 14 12 11 44 44 H 0.96999 * 120.00242 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.47598 * 58.54159 * 26 24 23 46 46 H 1.09000 * 109.46966 * 178.54823 * 26 24 23 47 47 H 1.09001 * 109.46992 * 298.54253 * 26 24 23 48 48 H 1.09007 * 110.94061 * 46.11426 * 27 5 4 49 49 H 1.09001 * 110.97578 * 282.44716 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2939 2.3782 0.0051 5 6 1.9241 3.6024 -0.0005 6 6 3.3103 3.6896 -0.0117 7 6 4.0598 2.5163 -0.0095 8 6 3.4310 1.2884 -0.0002 9 6 4.2524 0.0250 0.0027 10 7 4.3114 -0.5237 -1.3588 11 6 5.1055 -1.7592 -1.3945 12 6 5.1433 -2.2998 -2.8253 13 6 5.7794 -1.2579 -3.7476 14 6 3.7181 -2.5959 -3.2965 15 6 5.9585 -3.5669 -2.8620 16 1 6.0429 -4.1804 -1.9772 17 6 6.5963 -3.9427 -4.0251 18 7 7.6468 -4.7323 -3.9734 19 14 5.9638 -3.3366 -5.6750 20 1 6.6548 -2.0727 -6.0360 21 1 6.2322 -4.3621 -6.7150 22 1 4.5015 -3.0933 -5.5855 23 8 3.7224 4.9880 -0.0313 24 6 2.6448 5.8339 0.4047 25 1 2.6832 5.9828 1.4838 26 6 2.6798 7.1770 -0.3272 27 6 1.3895 5.0215 0.0078 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2151 2.3256 0.0084 32 1 5.1386 2.5677 -0.0154 33 1 3.7934 -0.7053 0.6692 34 1 5.2616 0.2485 0.3484 35 1 4.6737 0.1583 -2.0082 36 1 4.6520 -2.5016 -0.7377 37 1 6.1206 -1.5483 -1.0583 38 1 5.6543 -1.5667 -4.7854 39 1 5.2952 -0.2934 -3.5946 40 1 6.8418 -1.1714 -3.5197 41 1 3.1985 -3.1805 -2.5374 42 1 3.1871 -1.6580 -3.4593 43 1 3.7533 -3.1599 -4.2285 44 1 8.0953 -4.9971 -4.7917 45 1 2.6092 7.0073 -1.4016 46 1 1.8405 7.7909 -0.0003 47 1 3.6147 7.6897 -0.1011 48 1 0.6003 5.1362 0.7510 49 1 1.0352 5.3108 -0.9816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568727667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:00 Heat of formation + Delta-G solvation = -28.918889 kcal Electronic energy + Delta-G solvation = -27338.639354 eV Core-core repulsion = 23653.154138 eV Total energy + Delta-G solvation = -3685.485216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.35143 -39.49461 -37.33503 -36.42334 -34.17686 -33.23412 -31.83321 -30.81027 -29.50105 -28.03848 -27.05424 -26.18111 -25.07376 -24.68352 -22.90392 -22.33746 -21.93780 -20.94024 -18.69397 -17.83472 -17.32584 -17.12042 -15.94505 -15.91393 -15.62779 -15.39094 -14.89996 -14.54413 -14.42453 -14.04958 -13.74182 -13.62774 -13.39262 -13.28980 -12.88506 -12.72955 -12.58674 -12.50695 -12.29986 -12.24505 -12.03739 -11.81344 -11.72196 -11.66442 -11.46103 -11.39916 -10.89925 -10.66329 -10.27107 -10.18290 -10.13855 -9.77959 -9.64631 -8.98776 -8.91420 -8.63013 -8.17354 -7.73053 -7.65663 -6.07861 -3.94022 1.11051 1.36670 3.04689 3.34167 3.34478 3.48027 3.50340 3.55182 4.11143 4.22841 4.49859 4.57145 4.66201 4.77778 4.85440 4.98075 4.99831 5.09618 5.11411 5.16403 5.26252 5.29214 5.38887 5.44413 5.45541 5.55795 5.62123 5.69902 5.80045 5.88839 6.02860 6.11420 6.22809 6.25263 6.27349 6.38682 6.52527 6.61855 6.69808 6.87865 6.93628 7.01615 7.04095 7.20324 7.44208 7.50216 7.65297 7.70931 7.93388 8.07458 8.61773 9.03523 9.64056 11.05582 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.002998 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.098356 B = 9336.616430 C =10027.694528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.292 6.292 3 C 0.129 3.871 4 C -0.165 4.165 5 C -0.141 4.141 6 C 0.065 3.935 7 C -0.094 4.094 8 C -0.074 4.074 9 C 0.107 3.893 10 N -0.680 5.680 11 C 0.085 3.915 12 C 0.044 3.956 13 C -0.147 4.147 14 C -0.135 4.135 15 C -0.518 4.518 16 H 0.070 0.930 17 C 0.079 3.921 18 N -0.887 5.887 19 Si 0.872 3.128 20 H -0.285 1.285 21 H -0.307 1.307 22 H -0.246 1.246 23 O -0.303 6.303 24 C 0.077 3.923 25 H 0.084 0.916 26 C -0.149 4.149 27 C -0.105 4.105 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.033 0.967 35 H 0.335 0.665 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.040 0.960 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.048 0.952 44 H 0.262 0.738 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 21.357 10.225 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.205 6.205 3 C 0.083 3.917 4 C -0.183 4.183 5 C -0.142 4.142 6 C 0.021 3.979 7 C -0.113 4.113 8 C -0.075 4.075 9 C -0.022 4.022 10 N -0.312 5.312 11 C -0.043 4.043 12 C 0.043 3.957 13 C -0.204 4.204 14 C -0.193 4.193 15 C -0.555 4.555 16 H 0.088 0.912 17 C -0.124 4.124 18 N -0.523 5.523 19 Si 0.705 3.295 20 H -0.213 1.213 21 H -0.236 1.236 22 H -0.172 1.172 23 O -0.218 6.218 24 C 0.021 3.979 25 H 0.101 0.899 26 C -0.207 4.207 27 C -0.142 4.142 28 H 0.118 0.882 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.154 0.846 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.357 20.803 10.141 27.775 hybrid contribution 0.242 0.797 -0.863 1.200 sum -15.115 21.600 9.278 27.948 Atomic orbital electron populations 1.23027 0.79188 1.03941 1.00636 1.86267 1.20398 1.25515 1.88278 1.18531 0.91517 0.84096 0.97606 1.20290 0.99808 0.90439 1.07812 1.20430 0.93728 0.94621 1.05389 1.19276 0.92119 0.85092 1.01449 1.19983 0.99899 0.87987 1.03447 1.18956 0.90916 0.94638 1.03011 1.20681 0.96157 0.92193 0.93130 1.60639 1.57887 1.07777 1.04936 1.21997 0.93385 0.89567 0.99373 1.18429 0.93122 0.94000 0.90176 1.22260 1.00619 0.98035 0.99509 1.22148 0.97724 0.98984 1.00402 1.20795 1.29395 1.06755 0.98585 0.91159 1.24935 0.93436 0.94895 0.99127 1.70082 1.16966 1.37028 1.28273 0.87407 0.81500 0.76477 0.84159 1.21267 1.23609 1.17220 1.86860 1.38564 1.13484 1.82929 1.23312 0.84377 0.91171 0.99025 0.89865 1.21878 1.03129 0.94408 1.01244 1.21858 0.98281 0.90713 1.03354 0.88223 0.93285 0.92934 0.85403 0.84924 0.89917 0.94857 0.84630 0.91912 0.95927 0.94173 0.94704 0.93021 0.94312 0.95160 0.93305 0.92831 0.91416 0.90451 0.91250 0.89328 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.82 101.05 0.99 1.25 16 2 O -0.29 -4.05 9.74 -19.68 -0.19 -4.24 16 3 C 0.13 1.76 6.66 -39.20 -0.26 1.50 16 4 C -0.16 -1.92 9.03 -39.56 -0.36 -2.28 16 5 C -0.14 -1.63 6.27 -104.11 -0.65 -2.28 16 6 C 0.07 0.85 7.03 -38.97 -0.27 0.58 16 7 C -0.09 -1.26 9.67 -39.32 -0.38 -1.64 16 8 C -0.07 -1.05 5.40 -104.56 -0.56 -1.62 16 9 C 0.11 1.64 5.46 -4.97 -0.03 1.61 16 10 N -0.68 -12.06 5.92 -115.05 -0.68 -12.74 16 11 C 0.08 1.75 4.60 -3.82 -0.02 1.73 16 12 C 0.04 1.03 0.57 -155.66 -0.09 0.94 16 13 C -0.15 -3.32 7.09 37.16 0.26 -3.06 16 14 C -0.14 -3.04 7.94 37.16 0.29 -2.75 16 15 C -0.52 -14.49 8.54 -34.44 -0.29 -14.79 16 16 H 0.07 2.13 8.06 -52.48 -0.42 1.71 16 17 C 0.08 2.27 5.19 -17.82 -0.09 2.18 16 18 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 19 Si 0.87 22.03 23.48 -169.99 -3.99 18.04 16 20 H -0.28 -7.07 6.60 56.52 0.37 -6.69 16 21 H -0.31 -7.90 7.11 56.52 0.40 -7.49 16 22 H -0.25 -5.89 4.82 56.52 0.27 -5.62 16 23 O -0.30 -3.76 10.81 -20.50 -0.22 -3.98 16 24 C 0.08 0.66 4.25 -25.84 -0.11 0.55 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 C -0.15 -0.93 9.61 37.16 0.36 -0.57 16 27 C -0.11 -0.87 6.65 -26.52 -0.18 -1.04 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 31 H 0.13 1.18 6.32 -52.49 -0.33 0.85 16 32 H 0.13 1.64 8.02 -52.48 -0.42 1.22 16 33 H 0.08 1.29 7.86 -51.93 -0.41 0.88 16 34 H 0.03 0.48 7.99 -51.93 -0.41 0.07 16 35 H 0.33 5.87 6.58 -39.29 -0.26 5.61 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.04 0.94 2.66 -51.93 -0.14 0.80 16 39 H 0.03 0.68 6.13 -51.93 -0.32 0.36 16 40 H 0.05 1.20 8.11 -51.93 -0.42 0.77 16 41 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 42 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 43 H 0.05 1.15 4.50 -51.93 -0.23 0.92 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -32.10 375.15 -8.13 -40.23 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.08 Total: 3.15 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -1.39 Total: -19.68 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.09 Total: -39.17 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.41 Total: -8.22 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -3.99 Total: 18.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.10 -8.13 -40.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568727667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.315 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds