Wall clock time and date at job start Tue Mar 31 2020 14:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35981 * 116.99994 * 2 1 4 4 C 1.38819 * 120.17682 * 0.24256 * 3 2 1 5 5 C 1.37697 * 119.93666 * 180.26503 * 4 3 2 6 6 C 1.38896 * 120.83849 * 0.02562 * 5 4 3 7 7 C 1.39224 * 118.96880 * 359.63316 * 6 5 4 8 8 C 1.37955 * 120.31479 * 0.18633 * 7 6 5 9 9 C 1.50701 * 119.85475 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46462 * 259.99772 * 9 8 7 11 11 C 1.46910 * 110.99786 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46949 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47335 * 59.99913 * 12 11 10 14 14 C 1.53007 * 109.47202 * 299.99606 * 12 11 10 15 15 C 1.50704 * 109.46912 * 179.97438 * 12 11 10 16 16 H 1.08006 * 119.99534 * 26.60739 * 15 12 11 17 17 C 1.37869 * 119.99911 * 206.60839 * 15 12 11 18 18 N 1.31520 * 120.00091 * 156.12709 * 17 15 12 19 19 Si 1.86800 * 120.00133 * 335.85168 * 17 15 12 20 20 H 1.48501 * 109.47198 * 91.52000 * 19 17 15 21 21 H 1.48501 * 109.47106 * 211.52161 * 19 17 15 22 22 H 1.48508 * 109.46997 * 331.51993 * 19 17 15 23 23 O 1.36239 * 111.21454 * 179.28526 * 6 5 4 24 24 C 1.43773 * 109.24499 * 18.87126 * 23 6 5 25 25 H 1.08996 * 110.74528 * 90.63464 * 24 23 6 26 26 C 1.52995 * 110.74711 * 213.80126 * 24 23 6 27 27 C 1.51647 * 132.11730 * 180.25595 * 5 4 3 28 28 H 1.09003 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46960 * 300.00213 * 1 2 3 30 30 H 1.08995 * 109.46882 * 60.00344 * 1 2 3 31 31 H 1.08001 * 120.03171 * 359.96112 * 4 3 2 32 32 H 1.08005 * 119.84292 * 180.16209 * 7 6 5 33 33 H 1.09003 * 109.47039 * 139.99948 * 9 8 7 34 34 H 1.08992 * 109.47218 * 19.99631 * 9 8 7 35 35 H 1.00899 * 111.00631 * 56.04565 * 10 9 8 36 36 H 1.09000 * 109.46796 * 59.99739 * 11 10 9 37 37 H 1.08995 * 109.46615 * 299.99954 * 11 10 9 38 38 H 1.09004 * 109.46999 * 189.55700 * 13 12 11 39 39 H 1.09001 * 109.47326 * 309.55355 * 13 12 11 40 40 H 1.08997 * 109.46890 * 69.55521 * 13 12 11 41 41 H 1.08996 * 109.46906 * 311.13029 * 14 12 11 42 42 H 1.08998 * 109.46842 * 71.12554 * 14 12 11 43 43 H 1.08993 * 109.47271 * 191.12841 * 14 12 11 44 44 H 0.96999 * 120.00242 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.47598 * 58.54159 * 26 24 23 46 46 H 1.09000 * 109.46966 * 178.54823 * 26 24 23 47 47 H 1.09001 * 109.46992 * 298.54253 * 26 24 23 48 48 H 1.09007 * 110.94061 * 46.11426 * 27 5 4 49 49 H 1.09001 * 110.97578 * 282.44716 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2939 2.3782 0.0051 5 6 1.9241 3.6024 -0.0005 6 6 3.3103 3.6896 -0.0117 7 6 4.0598 2.5163 -0.0095 8 6 3.4310 1.2884 -0.0002 9 6 4.2524 0.0250 0.0027 10 7 4.3114 -0.5237 -1.3588 11 6 5.1055 -1.7592 -1.3945 12 6 5.1433 -2.2998 -2.8253 13 6 5.7794 -1.2579 -3.7476 14 6 3.7181 -2.5959 -3.2965 15 6 5.9585 -3.5669 -2.8620 16 1 6.0429 -4.1804 -1.9772 17 6 6.5963 -3.9427 -4.0251 18 7 7.6468 -4.7323 -3.9734 19 14 5.9638 -3.3366 -5.6750 20 1 6.6548 -2.0727 -6.0360 21 1 6.2322 -4.3621 -6.7150 22 1 4.5015 -3.0933 -5.5855 23 8 3.7224 4.9880 -0.0313 24 6 2.6448 5.8339 0.4047 25 1 2.6832 5.9828 1.4838 26 6 2.6798 7.1770 -0.3272 27 6 1.3895 5.0215 0.0078 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2151 2.3256 0.0084 32 1 5.1386 2.5677 -0.0154 33 1 3.7934 -0.7053 0.6692 34 1 5.2616 0.2485 0.3484 35 1 4.6737 0.1583 -2.0082 36 1 4.6520 -2.5016 -0.7377 37 1 6.1206 -1.5483 -1.0583 38 1 5.6543 -1.5667 -4.7854 39 1 5.2952 -0.2934 -3.5946 40 1 6.8418 -1.1714 -3.5197 41 1 3.1985 -3.1805 -2.5374 42 1 3.1871 -1.6580 -3.4593 43 1 3.7533 -3.1599 -4.2285 44 1 8.0953 -4.9971 -4.7917 45 1 2.6092 7.0073 -1.4016 46 1 1.8405 7.7909 -0.0003 47 1 3.6147 7.6897 -0.1011 48 1 0.6003 5.1362 0.7510 49 1 1.0352 5.3108 -0.9816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568727667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:59 Heat of formation + Delta-G solvation = -50.065843 kcal Electronic energy + Delta-G solvation = -27339.556355 eV Core-core repulsion = 23653.154138 eV Total energy + Delta-G solvation = -3686.402216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.19364 -40.39842 -38.92643 -37.52313 -35.60323 -34.13621 -33.60902 -31.98864 -30.38726 -28.84371 -28.08865 -27.94546 -27.03672 -26.02244 -24.28463 -23.21760 -22.64892 -21.89087 -20.58462 -18.68770 -18.27087 -18.13365 -17.90257 -17.22258 -16.76577 -16.43482 -16.21244 -15.58003 -15.46849 -15.31314 -15.21910 -14.78569 -14.66675 -14.24679 -14.16409 -13.99488 -13.93131 -13.71322 -13.60569 -13.42821 -13.22692 -13.01102 -12.82514 -12.54295 -12.49398 -12.31555 -12.24834 -12.11674 -12.01678 -11.72371 -11.54220 -11.51886 -11.06002 -10.94947 -10.52832 -10.35679 -9.88902 -9.18013 -8.61370 -8.32023 -6.21548 0.17098 0.42027 1.32377 1.42279 1.51861 2.27306 2.37343 2.49598 2.60725 3.01944 3.36304 3.55636 3.59905 3.77210 3.98784 4.05695 4.13568 4.22162 4.27988 4.35756 4.40598 4.46944 4.50768 4.55110 4.57933 4.65713 4.66198 4.76547 4.79074 4.80274 4.84441 4.89528 4.95730 5.07219 5.07787 5.11696 5.13103 5.19649 5.22977 5.28404 5.36029 5.38588 5.58685 5.63179 5.80155 5.89335 6.17309 6.19257 6.38784 6.57595 6.58450 6.81275 7.39375 8.85428 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.002998 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.098356 B = 9336.616430 C =10027.694528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.320 6.320 3 C 0.118 3.882 4 C -0.162 4.162 5 C -0.138 4.138 6 C 0.049 3.951 7 C -0.104 4.104 8 C -0.092 4.092 9 C 0.113 3.887 10 N -0.674 5.674 11 C 0.099 3.901 12 C 0.040 3.960 13 C -0.144 4.144 14 C -0.126 4.126 15 C -0.522 4.522 16 H 0.029 0.971 17 C 0.025 3.975 18 N -0.937 5.937 19 Si 0.930 3.070 20 H -0.274 1.274 21 H -0.314 1.314 22 H -0.220 1.220 23 O -0.325 6.325 24 C 0.068 3.932 25 H 0.094 0.906 26 C -0.146 4.146 27 C -0.100 4.100 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.337 0.663 36 H 0.052 0.948 37 H 0.010 0.990 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.050 0.950 43 H 0.039 0.961 44 H 0.263 0.737 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.066 0.934 48 H 0.115 0.885 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.156 24.449 9.843 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.233 6.233 3 C 0.072 3.928 4 C -0.181 4.181 5 C -0.140 4.140 6 C 0.004 3.996 7 C -0.123 4.123 8 C -0.094 4.094 9 C -0.015 4.015 10 N -0.307 5.307 11 C -0.030 4.030 12 C 0.039 3.961 13 C -0.201 4.201 14 C -0.183 4.183 15 C -0.560 4.560 16 H 0.047 0.953 17 C -0.173 4.173 18 N -0.576 5.576 19 Si 0.760 3.240 20 H -0.201 1.201 21 H -0.243 1.243 22 H -0.145 1.145 23 O -0.241 6.241 24 C 0.013 3.987 25 H 0.112 0.888 26 C -0.203 4.203 27 C -0.136 4.136 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.151 0.849 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.157 0.843 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.123 0.877 47 H 0.085 0.915 48 H 0.134 0.866 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.342 23.925 9.776 31.692 hybrid contribution 1.140 -0.133 -0.596 1.293 sum -17.202 23.792 9.180 30.761 Atomic orbital electron populations 1.23286 0.77122 1.05099 1.02029 1.86221 1.22713 1.25967 1.88384 1.18693 0.91493 0.84838 0.97778 1.20533 1.01049 0.89693 1.06778 1.20865 0.93353 0.96223 1.03515 1.19451 0.92983 0.85314 1.01830 1.20022 1.00120 0.88318 1.03865 1.18809 0.91368 0.94010 1.05184 1.20597 0.96721 0.92791 0.91439 1.60560 1.56658 1.06865 1.06587 1.21667 0.93134 0.90833 0.97401 1.18416 0.93194 0.92297 0.92209 1.22191 1.00013 0.99267 0.98653 1.22004 0.96817 0.99769 0.99698 1.21093 1.29696 1.08084 0.97088 0.95275 1.25741 0.93324 0.95385 1.02899 1.70202 1.18652 1.39428 1.29269 0.86467 0.82427 0.76031 0.79073 1.20073 1.24344 1.14452 1.86842 1.40549 1.13494 1.83182 1.23661 0.83523 0.91523 1.00031 0.88800 1.21905 1.04220 0.93485 1.00642 1.21973 0.98675 0.88138 1.04863 0.87356 0.91319 0.91981 0.82761 0.84937 0.90645 0.94416 0.84332 0.92938 0.97205 0.94627 0.91416 0.94450 0.94436 0.93111 0.94251 0.92761 0.92027 0.87739 0.91491 0.86631 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.82 113.37 1.11 1.43 16 2 O -0.32 -8.39 9.74 -93.33 -0.91 -9.30 16 3 C 0.12 3.06 6.66 22.51 0.15 3.21 16 4 C -0.16 -3.35 9.03 22.28 0.20 -3.15 16 5 C -0.14 -2.85 6.27 -19.53 -0.12 -2.97 16 6 C 0.05 1.21 7.03 22.66 0.16 1.37 16 7 C -0.10 -2.75 9.67 22.44 0.22 -2.54 16 8 C -0.09 -2.57 5.40 -19.83 -0.11 -2.68 16 9 C 0.11 3.45 5.46 85.56 0.47 3.91 16 10 N -0.67 -23.37 5.92 -517.92 -3.07 -26.43 16 11 C 0.10 4.10 4.60 86.30 0.40 4.49 16 12 C 0.04 1.85 0.57 -52.93 -0.03 1.82 16 13 C -0.14 -6.27 7.09 71.98 0.51 -5.76 16 14 C -0.13 -5.43 7.94 71.98 0.57 -4.85 16 15 C -0.52 -29.98 8.54 25.60 0.22 -29.76 16 16 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 17 C 0.02 1.46 5.19 84.65 0.44 1.90 16 18 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 19 Si 0.93 45.23 23.48 68.60 1.61 46.84 16 20 H -0.27 -12.77 6.60 99.48 0.66 -12.11 16 21 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 22 H -0.22 -9.74 4.82 99.48 0.48 -9.26 16 23 O -0.32 -7.62 10.81 -96.28 -1.04 -8.66 16 24 C 0.07 0.97 4.25 31.17 0.13 1.11 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 C -0.15 -1.40 9.61 71.98 0.69 -0.71 16 27 C -0.10 -1.29 6.65 30.73 0.20 -1.08 16 28 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 0.83 7.66 -2.39 -0.02 0.82 16 30 H 0.06 0.89 7.68 -2.39 -0.02 0.87 16 31 H 0.15 2.26 6.32 -2.91 -0.02 2.24 16 32 H 0.13 3.32 8.02 -2.91 -0.02 3.30 16 33 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 34 H 0.04 1.10 7.99 -2.39 -0.02 1.08 16 35 H 0.34 11.34 6.58 -89.69 -0.59 10.75 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.04 1.58 2.66 -2.38 -0.01 1.57 16 39 H 0.07 2.47 6.13 -2.39 -0.01 2.45 16 40 H 0.04 1.69 8.11 -2.39 -0.02 1.67 16 41 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 42 H 0.05 1.98 7.92 -2.39 -0.02 1.96 16 43 H 0.04 1.76 4.50 -2.39 -0.01 1.75 16 44 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 45 H 0.06 0.68 8.12 -2.39 -0.02 0.66 16 46 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.10 1.13 7.91 -2.39 -0.02 1.12 16 Total: -1.00 -71.06 375.15 2.19 -68.88 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.08 Total: 21.95 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 5.21 Total: -34.25 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -2.77 Total: -85.44 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -1.95 Total: -17.97 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.61 Total: 46.84 kcal Total: -71.06 2.19 -68.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568727667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.809 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds