Wall clock time and date at job start Tue Mar 31 2020 12:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00071 * 2 1 4 4 C 1.50695 * 109.47411 * 125.00233 * 3 2 1 5 5 C 1.38163 * 120.03128 * 265.02855 * 4 3 2 6 6 C 1.38245 * 120.06130 * 179.97438 * 5 4 3 7 7 C 1.38293 * 120.10504 * 359.74426 * 6 5 4 8 8 C 1.38116 * 120.06020 * 0.50583 * 7 6 5 9 9 C 1.38717 * 120.02959 * 84.99758 * 4 3 2 10 10 O 1.35894 * 120.05150 * 0.02562 * 9 4 3 11 11 C 1.42903 * 116.99924 * 180.02562 * 10 9 4 12 12 C 1.53005 * 109.47301 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47060 * 54.99640 * 12 11 10 14 14 O 1.42909 * 109.46854 * 294.99971 * 12 11 10 15 15 C 1.52995 * 109.47062 * 174.99935 * 12 11 10 16 16 N 1.46904 * 109.47169 * 184.99841 * 15 12 11 17 17 C 1.46898 * 110.99966 * 174.67883 * 16 15 12 18 18 H 1.08999 * 109.47366 * 325.91541 * 17 16 15 19 19 C 1.50706 * 109.46817 * 205.91832 * 17 16 15 20 20 H 1.08002 * 119.99919 * 0.02562 * 19 17 16 21 21 C 1.37879 * 119.99927 * 179.97438 * 19 17 16 22 22 N 1.31513 * 119.99967 * 180.02562 * 21 19 17 23 23 Si 1.86799 * 119.99893 * 0.02562 * 21 19 17 24 24 H 1.48496 * 109.47180 * 90.00169 * 23 21 19 25 25 H 1.48496 * 109.46839 * 209.99875 * 23 21 19 26 26 H 1.48500 * 109.47322 * 329.99819 * 23 21 19 27 27 C 1.52996 * 109.47369 * 85.92032 * 17 16 15 28 28 C 1.53002 * 109.47003 * 65.17827 * 27 17 16 29 29 H 1.08000 * 119.99835 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00111 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00514 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46978 * 5.00246 * 3 2 1 33 33 H 1.09005 * 109.47675 * 245.00448 * 3 2 1 34 34 H 1.08000 * 119.96804 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.94785 * 179.97438 * 6 5 4 36 36 H 1.08000 * 119.96497 * 180.27474 * 7 6 5 37 37 H 1.07995 * 120.03184 * 179.77104 * 8 7 6 38 38 H 1.08998 * 109.47153 * 299.99696 * 11 10 9 39 39 H 1.08998 * 109.47357 * 59.99921 * 11 10 9 40 40 H 0.96697 * 113.99647 * 299.99433 * 14 12 11 41 41 H 1.09001 * 109.47503 * 305.00101 * 15 12 11 42 42 H 1.09000 * 109.47064 * 65.00022 * 15 12 11 43 43 H 1.00900 * 110.99912 * 298.63198 * 16 15 12 44 44 H 0.96999 * 119.99896 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.47190 * 185.17304 * 27 17 16 46 46 H 1.08997 * 109.46970 * 305.17890 * 27 17 16 47 47 H 1.09004 * 109.46819 * 294.85574 * 28 27 17 48 48 H 1.08999 * 109.47619 * 54.85215 * 28 27 17 49 49 H 1.09003 * 109.47367 * 174.86137 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3327 1.1638 5 6 2.6459 1.9280 2.3530 6 6 3.5231 1.9532 3.4212 7 6 4.7754 1.3782 3.3041 8 6 5.1566 0.7864 2.1158 9 6 4.2779 0.7599 1.0422 10 8 4.6487 0.1737 -0.1264 11 6 5.9580 -0.3964 -0.1795 12 6 6.1933 -1.0056 -1.5632 13 1 6.0172 -0.2492 -2.3279 14 8 5.2961 -2.1003 -1.7605 15 6 7.6363 -1.5045 -1.6620 16 7 7.8976 -1.9800 -3.0272 17 6 9.3094 -2.3498 -3.1946 18 1 9.9319 -1.6900 -2.5903 19 6 9.6952 -2.2151 -4.6452 20 1 8.9648 -1.8871 -5.3701 21 6 10.9810 -2.5095 -5.0468 22 7 11.3178 -2.3915 -6.3125 23 14 12.2444 -3.0760 -3.7929 24 1 12.2047 -4.5564 -3.6844 25 1 13.5985 -2.6476 -4.2265 26 1 11.9344 -2.4742 -2.4712 27 6 9.5142 -3.7977 -2.7448 28 6 8.7412 -4.7349 -3.6749 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 1.6669 2.3740 2.4482 35 1 3.2286 2.4193 4.3498 36 1 5.4572 1.3953 4.1415 37 1 6.1360 0.3408 2.0237 38 1 6.7001 0.3799 0.0070 39 1 6.0469 -1.1738 0.5792 40 1 5.3967 -2.8126 -1.1143 41 1 8.3197 -0.6895 -1.4240 42 1 7.7869 -2.3224 -0.9574 43 1 7.2913 -2.7510 -3.2638 44 1 12.2225 -2.5982 -6.5950 45 1 10.5755 -4.0430 -2.7820 46 1 9.1494 -3.9162 -1.7246 47 1 7.6720 -4.5509 -3.5694 48 1 9.0412 -4.5516 -4.7067 49 1 8.9595 -5.7698 -3.4114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580090581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:56 Heat of formation + Delta-G solvation = -45.873268 kcal Electronic energy + Delta-G solvation = -26581.109018 eV Core-core repulsion = 22894.888605 eV Total energy + Delta-G solvation = -3686.220413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.52752 -38.46359 -37.24257 -36.05374 -35.32832 -32.62691 -31.63546 -31.38451 -30.45487 -29.34196 -27.03695 -26.51590 -24.80299 -23.22614 -22.34366 -22.05263 -21.21675 -19.92245 -19.59289 -18.21994 -16.97472 -16.64783 -16.41142 -16.14848 -15.62879 -15.25638 -15.21439 -14.89454 -14.67859 -14.30734 -14.01196 -13.73726 -13.46487 -13.28213 -13.10732 -12.98305 -12.70951 -12.52739 -12.37889 -12.11524 -11.90613 -11.74598 -11.34760 -11.23566 -11.16310 -11.12372 -10.82020 -10.72138 -10.65638 -10.49738 -10.04544 -9.86235 -9.49091 -9.39659 -9.15356 -9.08677 -8.56188 -8.32041 -7.48777 -6.06124 -4.02193 1.06505 1.22124 2.17113 2.94046 3.23120 3.31060 3.35285 3.52115 4.37248 4.38130 4.46979 4.54211 4.63767 4.77967 4.88835 4.90494 4.96359 5.02445 5.12681 5.20383 5.22486 5.23566 5.29787 5.42720 5.44170 5.51582 5.62075 5.79839 5.84013 5.85259 5.89842 5.96783 6.09471 6.14263 6.16339 6.20287 6.29479 6.46737 6.49437 6.58477 6.63332 6.73828 6.76605 6.94986 7.23721 7.26064 7.66677 7.68083 7.85672 8.29498 8.67357 9.06261 9.56322 11.07316 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002465 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.318458 B =11355.536148 C =12071.601683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.047 4.047 4 C -0.111 4.111 5 C -0.079 4.079 6 C -0.161 4.161 7 C -0.084 4.084 8 C -0.210 4.210 9 C 0.136 3.864 10 O -0.297 6.297 11 C 0.028 3.972 12 C 0.114 3.886 13 H 0.119 0.881 14 O -0.548 6.548 15 C 0.031 3.969 16 N -0.665 5.665 17 C 0.186 3.814 18 H 0.032 0.968 19 C -0.491 4.491 20 H 0.083 0.917 21 C 0.069 3.931 22 N -0.900 5.900 23 Si 0.881 3.119 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.271 1.271 27 C -0.158 4.158 28 C -0.139 4.139 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.367 0.633 41 H 0.077 0.923 42 H 0.022 0.978 43 H 0.340 0.660 44 H 0.263 0.737 45 H 0.049 0.951 46 H 0.030 0.970 47 H 0.042 0.958 48 H 0.082 0.918 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.749 5.591 19.955 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.151 4.151 3 C -0.084 4.084 4 C -0.112 4.112 5 C -0.097 4.097 6 C -0.179 4.179 7 C -0.102 4.102 8 C -0.229 4.229 9 C 0.090 3.910 10 O -0.210 6.210 11 C -0.048 4.048 12 C 0.055 3.945 13 H 0.136 0.864 14 O -0.351 6.351 15 C -0.100 4.100 16 N -0.297 5.297 17 C 0.077 3.923 18 H 0.049 0.951 19 C -0.529 4.529 20 H 0.101 0.899 21 C -0.132 4.132 22 N -0.538 5.538 23 Si 0.712 3.288 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.197 1.197 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.213 0.787 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.160 0.840 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -16.815 6.558 18.854 26.100 hybrid contribution 1.494 -1.623 1.977 2.962 sum -15.321 4.936 20.831 26.325 Atomic orbital electron populations 1.23784 0.95787 1.01640 1.02894 1.22868 0.95648 0.98355 0.98209 1.19597 0.96409 0.95727 0.96689 1.19128 0.92949 1.02366 0.96709 1.20871 0.99300 0.97828 0.91713 1.21011 0.94623 1.03090 0.99159 1.20931 0.96281 0.96243 0.96758 1.21281 1.00569 1.06739 0.94262 1.18912 0.93252 0.93341 0.85457 1.86164 1.33488 1.69680 1.31657 1.23676 0.83066 0.97953 1.00118 1.22063 0.89118 0.89195 0.94174 0.86367 1.86684 1.60483 1.30946 1.57032 1.22495 0.94915 0.99595 0.92962 1.60517 1.07232 1.41997 1.19960 1.19728 0.84952 0.89418 0.98219 0.95059 1.20892 0.96841 1.43897 0.91291 0.89930 1.24897 0.97953 0.95526 0.94832 1.69878 1.19475 1.49565 1.14923 0.86969 0.80924 0.78852 0.82091 1.20638 1.22424 1.19669 1.22501 0.99671 1.00753 0.96814 1.21658 0.98768 0.96480 1.02689 0.88782 0.88589 0.87212 0.90837 0.89316 0.85591 0.86048 0.85965 0.85489 0.90975 0.91951 0.78713 0.90469 0.95947 0.83990 0.92687 0.93302 0.95090 0.93895 0.89957 0.95096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.76 14.32 29.02 0.42 -1.35 16 2 C -0.13 -1.33 9.50 -36.03 -0.34 -1.68 16 3 C -0.05 -0.47 5.51 -29.04 -0.16 -0.63 16 4 C -0.11 -1.18 5.13 -104.47 -0.54 -1.71 16 5 C -0.08 -0.72 9.68 -39.61 -0.38 -1.10 16 6 C -0.16 -1.37 10.04 -39.56 -0.40 -1.77 16 7 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 8 C -0.21 -2.14 9.04 -39.44 -0.36 -2.49 16 9 C 0.14 1.57 6.66 -39.21 -0.26 1.31 16 10 O -0.30 -3.68 9.24 -24.25 -0.22 -3.91 16 11 C 0.03 0.31 4.37 37.16 0.16 0.47 16 12 C 0.11 1.50 3.49 -26.73 -0.09 1.41 16 13 H 0.12 1.77 8.14 -51.93 -0.42 1.34 16 14 O -0.55 -7.40 12.92 -40.07 -0.52 -7.91 16 15 C 0.03 0.47 5.18 -3.82 -0.02 0.45 16 16 N -0.67 -12.93 6.21 -107.95 -0.67 -13.60 16 17 C 0.19 4.19 1.93 -68.86 -0.13 4.06 16 18 H 0.03 0.74 6.76 -51.93 -0.35 0.39 16 19 C -0.49 -13.38 7.83 -34.44 -0.27 -13.65 16 20 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 21 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 22 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 23 Si 0.88 21.49 24.32 -169.99 -4.13 17.36 16 24 H -0.28 -6.67 6.92 56.52 0.39 -6.28 16 25 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 27 C -0.16 -3.28 5.22 -26.73 -0.14 -3.42 16 28 C -0.14 -2.72 9.40 37.16 0.35 -2.37 16 29 H 0.09 0.70 7.84 -52.49 -0.41 0.28 16 30 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 31 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.07 0.60 7.70 -51.93 -0.40 0.20 16 33 H 0.09 0.98 7.69 -51.93 -0.40 0.58 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.14 6.30 -52.49 -0.33 0.80 16 38 H 0.07 0.72 7.66 -51.93 -0.40 0.32 16 39 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 40 H 0.37 3.65 9.04 45.56 0.41 4.07 16 41 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 42 H 0.02 0.31 7.54 -51.93 -0.39 -0.08 16 43 H 0.34 6.46 6.33 -39.29 -0.25 6.22 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.05 1.08 3.42 -51.93 -0.18 0.91 16 46 H 0.03 0.56 7.50 -51.93 -0.39 0.17 16 47 H 0.04 0.76 6.63 -51.93 -0.34 0.41 16 48 H 0.08 1.87 6.85 -51.93 -0.36 1.51 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -31.02 389.77 -8.71 -39.74 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.16 Total: 10.56 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -2.66 Total: -21.76 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.10 Total: -39.95 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.74 Total: -11.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.13 Total: 17.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.02 -8.71 -39.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.136 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds