Wall clock time and date at job start Tue Mar 31 2020 12:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00071 * 2 1 4 4 C 1.50695 * 109.47411 * 125.00233 * 3 2 1 5 5 C 1.38163 * 120.03128 * 265.02855 * 4 3 2 6 6 C 1.38245 * 120.06130 * 179.97438 * 5 4 3 7 7 C 1.38293 * 120.10504 * 359.74426 * 6 5 4 8 8 C 1.38116 * 120.06020 * 0.50583 * 7 6 5 9 9 C 1.38717 * 120.02959 * 84.99758 * 4 3 2 10 10 O 1.35894 * 120.05150 * 0.02562 * 9 4 3 11 11 C 1.42903 * 116.99924 * 180.02562 * 10 9 4 12 12 C 1.53005 * 109.47301 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47060 * 54.99640 * 12 11 10 14 14 O 1.42909 * 109.46854 * 294.99971 * 12 11 10 15 15 C 1.52995 * 109.47062 * 174.99935 * 12 11 10 16 16 N 1.46904 * 109.47169 * 184.99841 * 15 12 11 17 17 C 1.46898 * 110.99966 * 174.67883 * 16 15 12 18 18 H 1.08999 * 109.47366 * 325.91541 * 17 16 15 19 19 C 1.50706 * 109.46817 * 205.91832 * 17 16 15 20 20 H 1.08002 * 119.99919 * 0.02562 * 19 17 16 21 21 C 1.37879 * 119.99927 * 179.97438 * 19 17 16 22 22 N 1.31513 * 119.99967 * 180.02562 * 21 19 17 23 23 Si 1.86799 * 119.99893 * 0.02562 * 21 19 17 24 24 H 1.48496 * 109.47180 * 90.00169 * 23 21 19 25 25 H 1.48496 * 109.46839 * 209.99875 * 23 21 19 26 26 H 1.48500 * 109.47322 * 329.99819 * 23 21 19 27 27 C 1.52996 * 109.47369 * 85.92032 * 17 16 15 28 28 C 1.53002 * 109.47003 * 65.17827 * 27 17 16 29 29 H 1.08000 * 119.99835 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00111 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00514 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46978 * 5.00246 * 3 2 1 33 33 H 1.09005 * 109.47675 * 245.00448 * 3 2 1 34 34 H 1.08000 * 119.96804 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.94785 * 179.97438 * 6 5 4 36 36 H 1.08000 * 119.96497 * 180.27474 * 7 6 5 37 37 H 1.07995 * 120.03184 * 179.77104 * 8 7 6 38 38 H 1.08998 * 109.47153 * 299.99696 * 11 10 9 39 39 H 1.08998 * 109.47357 * 59.99921 * 11 10 9 40 40 H 0.96697 * 113.99647 * 299.99433 * 14 12 11 41 41 H 1.09001 * 109.47503 * 305.00101 * 15 12 11 42 42 H 1.09000 * 109.47064 * 65.00022 * 15 12 11 43 43 H 1.00900 * 110.99912 * 298.63198 * 16 15 12 44 44 H 0.96999 * 119.99896 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.47190 * 185.17304 * 27 17 16 46 46 H 1.08997 * 109.46970 * 305.17890 * 27 17 16 47 47 H 1.09004 * 109.46819 * 294.85574 * 28 27 17 48 48 H 1.08999 * 109.47619 * 54.85215 * 28 27 17 49 49 H 1.09003 * 109.47367 * 174.86137 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3327 1.1638 5 6 2.6459 1.9280 2.3530 6 6 3.5231 1.9532 3.4212 7 6 4.7754 1.3782 3.3041 8 6 5.1566 0.7864 2.1158 9 6 4.2779 0.7599 1.0422 10 8 4.6487 0.1737 -0.1264 11 6 5.9580 -0.3964 -0.1795 12 6 6.1933 -1.0056 -1.5632 13 1 6.0172 -0.2492 -2.3279 14 8 5.2961 -2.1003 -1.7605 15 6 7.6363 -1.5045 -1.6620 16 7 7.8976 -1.9800 -3.0272 17 6 9.3094 -2.3498 -3.1946 18 1 9.9319 -1.6900 -2.5903 19 6 9.6952 -2.2151 -4.6452 20 1 8.9648 -1.8871 -5.3701 21 6 10.9810 -2.5095 -5.0468 22 7 11.3178 -2.3915 -6.3125 23 14 12.2444 -3.0760 -3.7929 24 1 12.2047 -4.5564 -3.6844 25 1 13.5985 -2.6476 -4.2265 26 1 11.9344 -2.4742 -2.4712 27 6 9.5142 -3.7977 -2.7448 28 6 8.7412 -4.7349 -3.6749 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 1.6669 2.3740 2.4482 35 1 3.2286 2.4193 4.3498 36 1 5.4572 1.3953 4.1415 37 1 6.1360 0.3408 2.0237 38 1 6.7001 0.3799 0.0070 39 1 6.0469 -1.1738 0.5792 40 1 5.3967 -2.8126 -1.1143 41 1 8.3197 -0.6895 -1.4240 42 1 7.7869 -2.3224 -0.9574 43 1 7.2913 -2.7510 -3.2638 44 1 12.2225 -2.5982 -6.5950 45 1 10.5755 -4.0430 -2.7820 46 1 9.1494 -3.9162 -1.7246 47 1 7.6720 -4.5509 -3.5694 48 1 9.0412 -4.5516 -4.7067 49 1 8.9595 -5.7698 -3.4114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580090581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:55 Heat of formation + Delta-G solvation = -67.285639 kcal Electronic energy + Delta-G solvation = -26582.037528 eV Core-core repulsion = 22894.888605 eV Total energy + Delta-G solvation = -3687.148923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.29789 -39.52113 -38.39261 -37.34628 -36.03949 -34.43724 -33.14186 -32.22095 -31.35449 -30.37172 -28.76353 -27.24256 -26.05814 -24.98525 -23.29543 -22.79783 -22.13557 -21.35117 -20.65330 -19.06102 -18.50917 -17.77665 -17.58057 -17.11276 -16.87262 -16.54097 -16.34369 -15.68644 -15.61434 -15.42034 -15.30884 -14.95814 -14.69161 -14.48980 -14.37376 -14.10993 -14.07913 -13.74765 -13.42937 -13.15038 -12.94661 -12.79834 -12.57236 -12.47042 -12.41083 -12.23747 -12.09319 -12.00120 -11.91105 -11.68637 -11.61498 -11.27937 -11.25203 -10.91282 -10.66505 -10.21605 -9.77592 -9.06612 -9.00953 -8.23626 -6.23712 0.37509 0.50918 1.30047 1.34286 1.44032 1.45051 2.09606 2.33682 2.82663 3.11069 3.37984 3.48460 3.82811 3.87363 3.97586 3.99205 4.07410 4.14488 4.22510 4.25241 4.28074 4.32934 4.33657 4.39512 4.46512 4.47488 4.52409 4.69001 4.72418 4.76886 4.86420 4.94304 5.01515 5.09290 5.13534 5.15076 5.15827 5.28748 5.41256 5.52313 5.58692 5.61631 5.72927 5.76220 5.89464 5.91746 6.04369 6.46712 6.71013 6.75184 6.81795 6.83960 7.39499 8.94095 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002465 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.318458 B =11355.536148 C =12071.601683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C -0.043 4.043 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.161 4.161 7 C -0.090 4.090 8 C -0.219 4.219 9 C 0.111 3.889 10 O -0.317 6.317 11 C 0.035 3.965 12 C 0.125 3.875 13 H 0.092 0.908 14 O -0.564 6.564 15 C 0.034 3.966 16 N -0.684 5.684 17 C 0.191 3.809 18 H 0.028 0.972 19 C -0.488 4.488 20 H 0.032 0.968 21 C 0.011 3.989 22 N -0.953 5.953 23 Si 0.945 3.055 24 H -0.267 1.267 25 H -0.303 1.303 26 H -0.248 1.248 27 C -0.156 4.156 28 C -0.134 4.134 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.383 0.617 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.342 0.658 44 H 0.263 0.737 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.040 0.960 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.495 5.265 23.979 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.171 4.171 3 C -0.080 4.080 4 C -0.128 4.128 5 C -0.102 4.102 6 C -0.179 4.179 7 C -0.108 4.108 8 C -0.238 4.238 9 C 0.066 3.934 10 O -0.231 6.231 11 C -0.041 4.041 12 C 0.065 3.935 13 H 0.110 0.890 14 O -0.370 6.370 15 C -0.096 4.096 16 N -0.316 5.316 17 C 0.081 3.919 18 H 0.046 0.954 19 C -0.527 4.527 20 H 0.050 0.950 21 C -0.185 4.185 22 N -0.594 5.594 23 Si 0.772 3.228 24 H -0.193 1.193 25 H -0.231 1.231 26 H -0.172 1.172 27 C -0.195 4.195 28 C -0.192 4.192 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.232 0.768 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.162 0.838 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.590 6.228 22.917 29.553 hybrid contribution 1.549 -1.463 0.708 2.246 sum -16.041 4.765 23.625 28.950 Atomic orbital electron populations 1.23981 0.95269 1.02779 1.00696 1.22800 0.96209 0.97803 1.00280 1.19546 0.96481 0.96258 0.95735 1.19364 0.92977 1.02875 0.97545 1.21166 1.00378 0.97385 0.91244 1.21379 0.94280 1.02312 0.99895 1.21275 0.96945 0.95609 0.96959 1.21486 1.00846 1.07053 0.94387 1.19169 0.94166 0.94492 0.85581 1.86116 1.33991 1.70296 1.32664 1.23549 0.83033 0.98679 0.98814 1.21766 0.88015 0.88697 0.94980 0.89041 1.86650 1.60555 1.31688 1.58141 1.22526 0.95943 1.00298 0.90800 1.60315 1.05562 1.42183 1.23531 1.19485 0.86674 0.91016 0.94698 0.95368 1.21132 0.95817 1.42472 0.93267 0.94963 1.25718 1.00288 0.95871 0.96640 1.70049 1.20062 1.51865 1.17455 0.85922 0.77480 0.79045 0.80327 1.19335 1.23068 1.17167 1.22418 0.99243 0.98868 0.98946 1.21581 0.99719 0.97860 1.00024 0.87200 0.87830 0.88928 0.89169 0.91396 0.83604 0.83553 0.83727 0.84531 0.90130 0.89900 0.76797 0.90363 0.93358 0.83832 0.92789 0.94415 0.91336 0.92231 0.94045 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 14.32 67.79 0.97 -2.05 16 2 C -0.15 -3.03 9.50 25.65 0.24 -2.79 16 3 C -0.04 -0.85 5.51 29.10 0.16 -0.69 16 4 C -0.13 -2.60 5.13 -19.77 -0.10 -2.70 16 5 C -0.08 -1.36 9.68 22.25 0.22 -1.14 16 6 C -0.16 -2.31 10.04 22.28 0.22 -2.08 16 7 C -0.09 -1.38 10.04 22.25 0.22 -1.16 16 8 C -0.22 -4.09 9.04 22.36 0.20 -3.89 16 9 C 0.11 2.49 6.66 22.51 0.15 2.64 16 10 O -0.32 -7.83 9.24 -87.73 -0.81 -8.64 16 11 C 0.04 0.72 4.37 71.98 0.31 1.03 16 12 C 0.13 3.20 3.49 30.59 0.11 3.31 16 13 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 14 O -0.56 -14.71 12.92 -144.35 -1.87 -16.58 16 15 C 0.03 0.96 5.18 86.30 0.45 1.41 16 16 N -0.68 -26.19 6.21 -495.45 -3.08 -29.26 16 17 C 0.19 8.44 1.93 44.17 0.09 8.53 16 18 H 0.03 1.28 6.76 -2.39 -0.02 1.26 16 19 C -0.49 -27.44 7.83 25.60 0.20 -27.24 16 20 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 21 C 0.01 0.64 5.43 84.66 0.46 1.10 16 22 N -0.95 -59.81 13.96 21.45 0.30 -59.52 16 23 Si 0.94 44.18 24.32 68.60 1.67 45.85 16 24 H -0.27 -11.90 6.92 99.48 0.69 -11.21 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.25 -10.54 6.53 99.48 0.65 -9.89 16 27 C -0.16 -6.01 5.22 30.59 0.16 -5.85 16 28 C -0.13 -5.06 9.40 71.98 0.68 -4.38 16 29 H 0.11 1.38 7.84 -2.91 -0.02 1.36 16 30 H 0.10 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.09 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.09 1.38 7.70 -2.39 -0.02 1.36 16 33 H 0.07 1.58 7.69 -2.38 -0.02 1.56 16 34 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.14 2.15 6.30 -2.91 -0.02 2.13 16 38 H 0.08 1.49 7.66 -2.39 -0.02 1.47 16 39 H 0.08 1.34 7.66 -2.39 -0.02 1.33 16 40 H 0.38 6.87 9.04 -74.06 -0.67 6.20 16 41 H 0.08 2.19 7.92 -2.39 -0.02 2.17 16 42 H 0.05 1.14 7.54 -2.39 -0.02 1.12 16 43 H 0.34 12.74 6.33 -89.69 -0.57 12.18 16 44 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.04 1.55 3.42 -2.39 -0.01 1.54 16 46 H 0.07 2.16 7.50 -2.39 -0.02 2.14 16 47 H 0.06 2.00 6.63 -2.38 -0.02 1.99 16 48 H 0.04 1.89 6.85 -2.39 -0.02 1.87 16 49 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -70.44 389.77 0.59 -69.85 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.37 Total: 34.26 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 4.74 Total: -35.96 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.78 Total: -88.78 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -2.68 Total: -25.22 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -70.44 0.59 -69.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.569 kcal (2) G-P(sol) polarization free energy of solvation -70.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds