Wall clock time and date at job start Tue Mar 31 2020 12:17:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52997 * 109.47093 * 2 1
4 4 H 1.08996 * 109.46956 * 304.99800 * 3 2 1
5 5 C 1.53007 * 109.47016 * 185.00063 * 3 2 1
6 6 O 1.42896 * 109.47459 * 65.00055 * 3 2 1
7 7 C 1.35899 * 117.00210 * 205.04474 * 6 3 2
8 8 C 1.38801 * 120.02003 * 354.72799 * 7 6 3
9 9 C 1.38172 * 120.08605 * 180.02562 * 8 7 6
10 10 C 1.38160 * 120.12315 * 0.23467 * 9 8 7
11 11 C 1.38891 * 120.03866 * 359.48587 * 10 9 8
12 12 N 1.39932 * 120.04209 * 180.25641 * 11 10 9
13 13 C 1.34773 * 119.99708 * 216.18610 * 12 11 10
14 14 O 1.21281 * 120.00554 * 355.21187 * 13 12 11
15 15 C 1.50705 * 119.99945 * 175.21661 * 13 12 11
16 16 C 1.52999 * 109.47350 * 179.97438 * 15 13 12
17 17 C 1.52994 * 109.46899 * 179.97438 * 16 15 13
18 18 C 1.53000 * 109.46831 * 179.97438 * 17 16 15
19 19 C 1.50706 * 109.47222 * 179.97438 * 18 17 16
20 20 H 1.07996 * 119.99570 * 0.02562 * 19 18 17
21 21 C 1.37875 * 119.99960 * 180.02562 * 19 18 17
22 22 N 1.31520 * 119.99905 * 180.02562 * 21 19 18
23 23 Si 1.86797 * 120.00151 * 0.02562 * 21 19 18
24 24 H 1.48500 * 109.47269 * 89.99809 * 23 21 19
25 25 H 1.48501 * 109.47007 * 210.00102 * 23 21 19
26 26 H 1.48498 * 109.47093 * 329.99400 * 23 21 19
27 27 C 1.38582 * 120.01991 * 174.74201 * 7 6 3
28 28 H 1.09007 * 109.47111 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.47033 * 299.99879 * 1 2 3
30 30 H 1.08999 * 109.47475 * 60.00323 * 1 2 3
31 31 H 1.09001 * 109.47333 * 239.99717 * 2 1 3
32 32 H 1.09000 * 109.47048 * 119.99998 * 2 1 3
33 33 H 1.08996 * 109.47043 * 299.99683 * 5 3 2
34 34 H 1.08994 * 109.47010 * 59.99935 * 5 3 2
35 35 H 1.08999 * 109.46694 * 179.97438 * 5 3 2
36 36 H 1.08002 * 119.95982 * 0.02562 * 8 7 6
37 37 H 1.07997 * 119.93606 * 179.97438 * 9 8 7
38 38 H 1.08007 * 119.98090 * 179.74449 * 10 9 8
39 39 H 0.96996 * 120.00043 * 36.18179 * 12 11 10
40 40 H 1.09001 * 109.46548 * 299.99764 * 15 13 12
41 41 H 1.09000 * 109.46680 * 59.99312 * 15 13 12
42 42 H 1.08998 * 109.46525 * 299.99503 * 16 15 13
43 43 H 1.09001 * 109.47231 * 59.99750 * 16 15 13
44 44 H 1.09002 * 109.47429 * 299.99722 * 17 16 15
45 45 H 1.09001 * 109.47225 * 59.99941 * 17 16 15
46 46 H 1.09001 * 109.47599 * 299.99882 * 18 17 16
47 47 H 1.09000 * 109.47361 * 60.00491 * 18 17 16
48 48 H 0.96993 * 120.00410 * 179.97438 * 22 21 19
49 49 H 1.08001 * 120.06460 * 359.96672 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9814 -0.8418
5 6 3.5648 1.4443 -0.1257
6 8 1.6619 2.0814 1.2210
7 6 1.5512 3.4357 1.2001
8 6 1.9066 4.1440 0.0606
9 6 1.7950 5.5211 0.0380
10 6 1.3341 6.1977 1.1510
11 6 0.9716 5.4936 2.2920
12 7 0.4997 6.1784 3.4173
13 6 0.8167 5.7433 4.6529
14 8 1.4373 4.7106 4.7915
15 6 0.3999 6.5400 5.8623
16 6 0.8804 5.8313 7.1303
17 6 0.4578 6.6405 8.3580
18 6 0.9377 5.9315 9.6260
19 6 0.5220 6.7289 10.8354
20 1 -0.0297 7.6490 10.7119
21 6 0.8461 6.2836 12.0994
22 7 0.4828 6.9792 13.1548
23 14 1.8010 4.6924 12.3129
24 1 3.2569 4.9849 12.3127
25 1 1.4237 4.0578 13.6014
26 1 1.4813 3.7694 11.1944
27 6 1.0836 4.1104 2.3167
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 3.9994 0.9053 0.7161
34 1 3.8531 0.9570 -1.0571
35 1 3.9280 2.4720 -0.1262
36 1 2.2708 3.6182 -0.8096
37 1 2.0726 6.0698 -0.8497
38 1 1.2518 7.2744 1.1322
39 1 -0.0555 6.9662 3.3082
40 1 0.8422 7.5350 5.8119
41 1 -0.6865 6.6259 5.8839
42 1 0.4377 4.8365 7.1803
43 1 1.9668 5.7450 7.1088
44 1 0.9007 7.6352 8.3077
45 1 -0.6286 6.7272 8.3797
46 1 0.4945 4.9370 9.6762
47 1 2.0240 5.8445 9.6046
48 1 0.7104 6.6658 14.0441
49 1 0.8063 3.5609 3.2041
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000588153995.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:37
Heat of formation + Delta-G solvation = -78.191192 kcal
Electronic energy + Delta-G solvation = -25755.456475 eV
Core-core repulsion = 22067.834652 eV
Total energy + Delta-G solvation = -3687.621823 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.92795 -39.95713 -37.92419 -35.20863 -34.87641 -34.25961 -32.60914 -30.99453
-30.41592 -29.94939 -29.21016 -26.02625 -24.42637 -23.58170 -22.77851 -22.12246
-20.83781 -20.20541 -20.02506 -18.85004 -17.18032 -16.66744 -16.48457 -16.35135
-16.05521 -15.72924 -15.48620 -14.57936 -14.39362 -14.28254 -14.09711 -13.78000
-13.73055 -13.69194 -13.54026 -12.88115 -12.66340 -12.54028 -12.29286 -12.17121
-12.10189 -11.93227 -11.76568 -11.61844 -11.47910 -11.14805 -11.10737 -10.95195
-10.75170 -10.55059 -10.36279 -9.96090 -9.81078 -9.64660 -9.44369 -9.11558
-8.61769 -8.48548 -8.26963 -5.99793 -3.97298 1.02687 1.22735 2.52823
2.70731 3.08139 3.36302 3.43294 3.49440 3.57654 4.23795 4.45057
4.50938 4.55944 4.61907 4.66371 4.79568 4.88113 4.92705 5.03102
5.12928 5.15567 5.16151 5.23629 5.26269 5.32509 5.35069 5.44337
5.54286 5.59865 5.68957 5.73737 5.77940 5.90338 5.99714 6.00981
6.04937 6.12503 6.17920 6.22694 6.39141 6.65950 6.66838 6.81013
6.98706 7.20721 7.24804 7.38398 7.51167 7.85373 8.03249 8.58860
9.05073 9.63560 11.13650
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.016219 B = 0.002103 C = 0.001934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1725.921948 B =13309.633183 C =14473.342723
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.120 4.120
3 C 0.081 3.919
4 H 0.074 0.926
5 C -0.182 4.182
6 O -0.304 6.304
7 C 0.151 3.849
8 C -0.230 4.230
9 C -0.063 4.063
10 C -0.186 4.186
11 C 0.188 3.812
12 N -0.680 5.680
13 C 0.511 3.489
14 O -0.512 6.512
15 C -0.137 4.137
16 C -0.107 4.107
17 C -0.102 4.102
18 C -0.016 4.016
19 C -0.519 4.519
20 H 0.071 0.929
21 C 0.064 3.936
22 N -0.906 5.906
23 Si 0.880 3.120
24 H -0.277 1.277
25 H -0.289 1.289
26 H -0.264 1.264
27 C -0.157 4.157
28 H 0.057 0.943
29 H 0.063 0.937
30 H 0.052 0.948
31 H 0.081 0.919
32 H 0.075 0.925
33 H 0.068 0.932
34 H 0.071 0.929
35 H 0.064 0.936
36 H 0.128 0.872
37 H 0.127 0.873
38 H 0.126 0.874
39 H 0.413 0.587
40 H 0.096 0.904
41 H 0.096 0.904
42 H 0.065 0.935
43 H 0.064 0.936
44 H 0.053 0.947
45 H 0.054 0.946
46 H 0.016 0.984
47 H 0.011 0.989
48 H 0.262 0.738
49 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.070 -7.111 -34.812 35.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.157 4.157
3 C 0.024 3.976
4 H 0.091 0.909
5 C -0.239 4.239
6 O -0.218 6.218
7 C 0.105 3.895
8 C -0.250 4.250
9 C -0.082 4.082
10 C -0.207 4.207
11 C 0.093 3.907
12 N -0.327 5.327
13 C 0.300 3.700
14 O -0.385 6.385
15 C -0.177 4.177
16 C -0.145 4.145
17 C -0.140 4.140
18 C -0.053 4.053
19 C -0.557 4.557
20 H 0.089 0.911
21 C -0.137 4.137
22 N -0.545 5.545
23 Si 0.707 3.293
24 H -0.203 1.203
25 H -0.215 1.215
26 H -0.189 1.189
27 C -0.178 4.178
28 H 0.076 0.924
29 H 0.082 0.918
30 H 0.071 0.929
31 H 0.099 0.901
32 H 0.094 0.906
33 H 0.088 0.912
34 H 0.089 0.911
35 H 0.083 0.917
36 H 0.146 0.854
37 H 0.145 0.855
38 H 0.144 0.856
39 H 0.249 0.751
40 H 0.115 0.885
41 H 0.114 0.886
42 H 0.083 0.917
43 H 0.083 0.917
44 H 0.072 0.928
45 H 0.072 0.928
46 H 0.034 0.966
47 H 0.030 0.970
48 H 0.072 0.928
49 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges 1.497 -7.980 -34.261 35.209
hybrid contribution 0.368 -0.221 -0.042 0.431
sum 1.865 -8.200 -34.303 35.318
Atomic orbital electron populations
1.21765 0.95055 1.01965 1.02409 1.21640 0.96935 0.93865 1.03266
1.22517 0.95067 0.93993 0.85987 0.90857 1.22393 0.95238 1.03279
1.03011 1.86153 1.83531 1.16655 1.35446 1.18751 0.94502 0.82642
0.93638 1.21231 1.09755 0.95356 0.98635 1.20670 0.96587 0.93379
0.97535 1.20817 1.06212 0.99814 0.93828 1.17432 0.95894 0.90387
0.86977 1.43723 1.52775 1.31605 1.04552 1.21358 0.78430 0.86093
0.84130 1.90728 1.38440 1.23528 1.85812 1.21805 1.03286 1.00169
0.92413 1.21508 1.01603 0.99419 0.92003 1.21475 1.00317 0.98527
0.93687 1.19580 0.95978 0.96332 0.93426 1.21178 1.36002 1.09119
0.89413 0.91105 1.25048 0.95597 0.97013 0.96004 1.69920 1.47323
1.39106 0.98162 0.86771 0.80520 0.84454 0.77535 1.20326 1.21463
1.18889 1.20473 1.05938 0.92554 0.98826 0.92376 0.91829 0.92883
0.90086 0.90620 0.91250 0.91050 0.91691 0.85440 0.85542 0.85595
0.75095 0.88542 0.88562 0.91651 0.91678 0.92801 0.92770 0.96593
0.97045 0.92823 0.83566
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 9.81 37.15 0.36 -0.70 16
2 C -0.12 -0.79 5.64 -26.74 -0.15 -0.94 16
3 C 0.08 0.63 2.22 -26.73 -0.06 0.57 16
4 H 0.07 0.49 6.29 -51.93 -0.33 0.17 16
5 C -0.18 -1.24 9.18 37.16 0.34 -0.90 16
6 O -0.30 -3.49 9.33 -19.42 -0.18 -3.67 16
7 C 0.15 1.77 6.60 -39.25 -0.26 1.51 16
8 C -0.23 -2.14 8.25 -39.40 -0.32 -2.46 16
9 C -0.06 -0.53 10.03 -39.63 -0.40 -0.92 16
10 C -0.19 -1.69 9.96 -39.37 -0.39 -2.08 16
11 C 0.19 2.14 6.28 -83.71 -0.53 1.61 16
12 N -0.68 -6.90 5.33 -9.88 -0.05 -6.95 16
13 C 0.51 6.74 7.67 -10.98 -0.08 6.66 16
14 O -0.51 -8.86 13.46 5.56 0.07 -8.79 16
15 C -0.14 -1.65 5.70 -27.88 -0.16 -1.81 16
16 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16
17 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16
18 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16
19 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16
20 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16
21 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16
22 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16
23 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16
24 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16
25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16
26 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16
27 C -0.16 -2.09 8.63 -39.25 -0.34 -2.43 16
28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
29 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16
30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
35 H 0.06 0.48 6.93 -51.93 -0.36 0.12 16
36 H 0.13 0.92 5.43 -52.49 -0.28 0.63 16
37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16
38 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16
39 H 0.41 2.66 8.83 -40.82 -0.36 2.30 16
40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16
41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
42 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16
43 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16
44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16
47 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16
48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
49 H 0.15 2.27 6.28 -52.49 -0.33 1.94 16
LS Contribution 395.50 15.07 5.96 5.96
Total: -1.00 -35.06 395.50 -9.22 -44.28
By element:
Atomic # 1 Polarization: 7.41 SS G_CDS: -8.34 Total: -0.92 kcal
Atomic # 6 Polarization: -17.25 SS G_CDS: -2.79 Total: -20.04 kcal
Atomic # 7 Polarization: -35.35 SS G_CDS: 0.72 Total: -34.63 kcal
Atomic # 8 Polarization: -12.35 SS G_CDS: -0.11 Total: -12.46 kcal
Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -35.06 -9.22 -44.28 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588153995.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.915 kcal
(2) G-P(sol) polarization free energy of solvation -35.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.191 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds