Wall clock time and date at job start Tue Mar 31 2020 12:17:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52997 * 109.47093 * 2 1
4 4 H 1.08996 * 109.46956 * 304.99800 * 3 2 1
5 5 C 1.53007 * 109.47016 * 185.00063 * 3 2 1
6 6 O 1.42896 * 109.47459 * 65.00055 * 3 2 1
7 7 C 1.35899 * 117.00210 * 205.04474 * 6 3 2
8 8 C 1.38801 * 120.02003 * 354.72799 * 7 6 3
9 9 C 1.38172 * 120.08605 * 180.02562 * 8 7 6
10 10 C 1.38160 * 120.12315 * 0.23467 * 9 8 7
11 11 C 1.38891 * 120.03866 * 359.48587 * 10 9 8
12 12 N 1.39932 * 120.04209 * 180.25641 * 11 10 9
13 13 C 1.34773 * 119.99708 * 216.18610 * 12 11 10
14 14 O 1.21281 * 120.00554 * 355.21187 * 13 12 11
15 15 C 1.50705 * 119.99945 * 175.21661 * 13 12 11
16 16 C 1.52999 * 109.47350 * 179.97438 * 15 13 12
17 17 C 1.52994 * 109.46899 * 179.97438 * 16 15 13
18 18 C 1.53000 * 109.46831 * 179.97438 * 17 16 15
19 19 C 1.50706 * 109.47222 * 179.97438 * 18 17 16
20 20 H 1.07996 * 119.99570 * 0.02562 * 19 18 17
21 21 C 1.37875 * 119.99960 * 180.02562 * 19 18 17
22 22 N 1.31520 * 119.99905 * 180.02562 * 21 19 18
23 23 Si 1.86797 * 120.00151 * 0.02562 * 21 19 18
24 24 H 1.48500 * 109.47269 * 89.99809 * 23 21 19
25 25 H 1.48501 * 109.47007 * 210.00102 * 23 21 19
26 26 H 1.48498 * 109.47093 * 329.99400 * 23 21 19
27 27 C 1.38582 * 120.01991 * 174.74201 * 7 6 3
28 28 H 1.09007 * 109.47111 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.47033 * 299.99879 * 1 2 3
30 30 H 1.08999 * 109.47475 * 60.00323 * 1 2 3
31 31 H 1.09001 * 109.47333 * 239.99717 * 2 1 3
32 32 H 1.09000 * 109.47048 * 119.99998 * 2 1 3
33 33 H 1.08996 * 109.47043 * 299.99683 * 5 3 2
34 34 H 1.08994 * 109.47010 * 59.99935 * 5 3 2
35 35 H 1.08999 * 109.46694 * 179.97438 * 5 3 2
36 36 H 1.08002 * 119.95982 * 0.02562 * 8 7 6
37 37 H 1.07997 * 119.93606 * 179.97438 * 9 8 7
38 38 H 1.08007 * 119.98090 * 179.74449 * 10 9 8
39 39 H 0.96996 * 120.00043 * 36.18179 * 12 11 10
40 40 H 1.09001 * 109.46548 * 299.99764 * 15 13 12
41 41 H 1.09000 * 109.46680 * 59.99312 * 15 13 12
42 42 H 1.08998 * 109.46525 * 299.99503 * 16 15 13
43 43 H 1.09001 * 109.47231 * 59.99750 * 16 15 13
44 44 H 1.09002 * 109.47429 * 299.99722 * 17 16 15
45 45 H 1.09001 * 109.47225 * 59.99941 * 17 16 15
46 46 H 1.09001 * 109.47599 * 299.99882 * 18 17 16
47 47 H 1.09000 * 109.47361 * 60.00491 * 18 17 16
48 48 H 0.96993 * 120.00410 * 179.97438 * 22 21 19
49 49 H 1.08001 * 120.06460 * 359.96672 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9814 -0.8418
5 6 3.5648 1.4443 -0.1257
6 8 1.6619 2.0814 1.2210
7 6 1.5512 3.4357 1.2001
8 6 1.9066 4.1440 0.0606
9 6 1.7950 5.5211 0.0380
10 6 1.3341 6.1977 1.1510
11 6 0.9716 5.4936 2.2920
12 7 0.4997 6.1784 3.4173
13 6 0.8167 5.7433 4.6529
14 8 1.4373 4.7106 4.7915
15 6 0.3999 6.5400 5.8623
16 6 0.8804 5.8313 7.1303
17 6 0.4578 6.6405 8.3580
18 6 0.9377 5.9315 9.6260
19 6 0.5220 6.7289 10.8354
20 1 -0.0297 7.6490 10.7119
21 6 0.8461 6.2836 12.0994
22 7 0.4828 6.9792 13.1548
23 14 1.8010 4.6924 12.3129
24 1 3.2569 4.9849 12.3127
25 1 1.4237 4.0578 13.6014
26 1 1.4813 3.7694 11.1944
27 6 1.0836 4.1104 2.3167
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 3.9994 0.9053 0.7161
34 1 3.8531 0.9570 -1.0571
35 1 3.9280 2.4720 -0.1262
36 1 2.2708 3.6182 -0.8096
37 1 2.0726 6.0698 -0.8497
38 1 1.2518 7.2744 1.1322
39 1 -0.0555 6.9662 3.3082
40 1 0.8422 7.5350 5.8119
41 1 -0.6865 6.6259 5.8839
42 1 0.4377 4.8365 7.1803
43 1 1.9668 5.7450 7.1088
44 1 0.9007 7.6352 8.3077
45 1 -0.6286 6.7272 8.3797
46 1 0.4945 4.9370 9.6762
47 1 2.0240 5.8445 9.6046
48 1 0.7104 6.6658 14.0441
49 1 0.8063 3.5609 3.2041
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000588153995.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:36
Heat of formation + Delta-G solvation = -99.420230 kcal
Electronic energy + Delta-G solvation = -25756.377035 eV
Core-core repulsion = 22067.834652 eV
Total energy + Delta-G solvation = -3688.542383 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.76997 -40.81740 -38.73922 -36.71485 -35.78493 -34.95912 -34.62244 -32.20010
-31.41534 -30.64618 -30.21844 -27.63509 -25.01742 -24.68787 -23.57652 -23.33218
-21.88046 -21.53818 -21.11064 -19.60858 -18.85910 -18.10049 -17.33190 -17.18974
-16.96081 -16.57813 -16.31987 -16.27984 -15.66770 -15.26647 -15.06285 -14.73211
-14.69677 -14.46398 -14.34637 -14.20644 -13.93703 -13.71173 -13.54115 -13.44993
-13.01192 -12.85866 -12.75897 -12.56573 -12.38066 -12.30436 -12.09023 -12.03460
-11.78706 -11.76499 -11.57742 -11.49324 -11.36009 -11.26617 -11.14596 -10.78241
-10.76510 -9.45948 -9.02448 -8.30323 -6.33092 0.23103 0.46877 1.33669
1.35218 1.48013 1.56148 1.93446 2.33095 2.34976 2.81315 3.04963
3.67687 3.72665 3.87800 3.95693 3.99670 4.00225 4.13447 4.15971
4.25002 4.30382 4.40636 4.52335 4.58568 4.58895 4.63131 4.64176
4.71266 4.75702 4.82384 4.85410 4.94797 5.02963 5.12612 5.14628
5.19058 5.20026 5.26309 5.29380 5.33387 5.34058 5.39786 5.49291
5.59788 5.65091 5.68082 5.89181 6.28930 6.41194 6.52337 6.74800
7.13064 7.31621 8.86136
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.016219 B = 0.002103 C = 0.001934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1725.921948 B =13309.633183 C =14473.342723
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.119 4.119
3 C 0.073 3.927
4 H 0.088 0.912
5 C -0.178 4.178
6 O -0.331 6.331
7 C 0.135 3.865
8 C -0.227 4.227
9 C -0.057 4.057
10 C -0.180 4.180
11 C 0.171 3.829
12 N -0.662 5.662
13 C 0.510 3.490
14 O -0.562 6.562
15 C -0.127 4.127
16 C -0.099 4.099
17 C -0.093 4.093
18 C -0.018 4.018
19 C -0.529 4.529
20 H 0.039 0.961
21 C 0.003 3.997
22 N -0.949 5.949
23 Si 0.946 3.054
24 H -0.267 1.267
25 H -0.281 1.281
26 H -0.254 1.254
27 C -0.191 4.191
28 H 0.067 0.933
29 H 0.036 0.964
30 H 0.062 0.938
31 H 0.109 0.891
32 H 0.062 0.938
33 H 0.054 0.946
34 H 0.098 0.902
35 H 0.059 0.941
36 H 0.150 0.850
37 H 0.164 0.836
38 H 0.156 0.844
39 H 0.432 0.568
40 H 0.124 0.876
41 H 0.123 0.877
42 H 0.050 0.950
43 H 0.051 0.949
44 H 0.060 0.940
45 H 0.059 0.941
46 H 0.012 0.988
47 H 0.012 0.988
48 H 0.266 0.734
49 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.754 -6.809 -38.278 38.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.156 4.156
3 C 0.018 3.982
4 H 0.106 0.894
5 C -0.236 4.236
6 O -0.246 6.246
7 C 0.089 3.911
8 C -0.246 4.246
9 C -0.076 4.076
10 C -0.201 4.201
11 C 0.076 3.924
12 N -0.310 5.310
13 C 0.300 3.700
14 O -0.439 6.439
15 C -0.166 4.166
16 C -0.137 4.137
17 C -0.131 4.131
18 C -0.056 4.056
19 C -0.567 4.567
20 H 0.057 0.943
21 C -0.193 4.193
22 N -0.590 5.590
23 Si 0.770 3.230
24 H -0.192 1.192
25 H -0.207 1.207
26 H -0.178 1.178
27 C -0.212 4.212
28 H 0.086 0.914
29 H 0.055 0.945
30 H 0.081 0.919
31 H 0.127 0.873
32 H 0.081 0.919
33 H 0.073 0.927
34 H 0.116 0.884
35 H 0.078 0.922
36 H 0.168 0.832
37 H 0.181 0.819
38 H 0.174 0.826
39 H 0.272 0.728
40 H 0.142 0.858
41 H 0.141 0.859
42 H 0.069 0.931
43 H 0.070 0.930
44 H 0.078 0.922
45 H 0.077 0.923
46 H 0.031 0.969
47 H 0.030 0.970
48 H 0.075 0.925
49 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 2.155 -7.643 -37.769 38.594
hybrid contribution 0.114 -0.272 0.977 1.021
sum 2.269 -7.915 -36.791 37.701
Atomic orbital electron populations
1.21754 0.95458 1.02326 1.01571 1.21692 0.96582 0.93373 1.03940
1.22805 0.95828 0.94400 0.85209 0.89422 1.22382 0.94366 1.03039
1.03783 1.86133 1.83841 1.16937 1.37660 1.18922 0.95050 0.82976
0.94157 1.21519 1.08792 0.96054 0.98255 1.21160 0.94890 0.93079
0.98445 1.21165 1.04858 1.01245 0.92797 1.17640 0.96798 0.89906
0.88045 1.43492 1.52265 1.31742 1.03466 1.21523 0.77773 0.85415
0.85267 1.90727 1.40955 1.25689 1.86569 1.21704 1.04987 1.00379
0.89530 1.21299 1.00712 0.98721 0.93004 1.21333 1.00541 0.98607
0.92601 1.19587 0.95949 0.95960 0.94057 1.21538 1.35290 1.08492
0.91374 0.94311 1.25986 0.96817 1.00806 0.95732 1.70056 1.48957
1.41202 0.98828 0.85708 0.79278 0.80039 0.77942 1.19246 1.20697
1.17777 1.20416 1.08485 0.93791 0.98526 0.91428 0.94465 0.91866
0.87318 0.91932 0.92684 0.88364 0.92217 0.83214 0.81860 0.82601
0.72811 0.85773 0.85900 0.93109 0.92997 0.92172 0.92253 0.96926
0.96990 0.92523 0.87190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.08 9.81 71.98 0.71 -1.37 16
2 C -0.12 -1.47 5.64 30.59 0.17 -1.30 16
3 C 0.07 1.08 2.22 30.60 0.07 1.15 16
4 H 0.09 1.01 6.29 -2.39 -0.02 1.00 16
5 C -0.18 -2.22 9.18 71.98 0.66 -1.56 16
6 O -0.33 -7.97 9.33 -92.41 -0.86 -8.83 16
7 C 0.13 3.23 6.60 22.49 0.15 3.38 16
8 C -0.23 -3.78 8.25 22.39 0.18 -3.60 16
9 C -0.06 -0.77 10.03 22.24 0.22 -0.54 16
10 C -0.18 -2.76 9.96 22.41 0.22 -2.54 16
11 C 0.17 3.76 6.28 38.14 0.24 4.00 16
12 N -0.66 -12.57 5.33 -303.55 -1.62 -14.19 16
13 C 0.51 13.26 7.67 87.66 0.67 13.93 16
14 O -0.56 -20.31 13.46 -3.03 -0.04 -20.36 16
15 C -0.13 -2.81 5.70 29.85 0.17 -2.64 16
16 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16
17 C -0.09 -3.57 5.15 30.59 0.16 -3.41 16
18 C -0.02 -0.89 4.04 29.85 0.12 -0.77 16
19 C -0.53 -31.33 9.66 25.60 0.25 -31.09 16
20 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16
21 C 0.00 0.20 5.47 84.65 0.46 0.66 16
22 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16
23 Si 0.95 46.56 27.47 68.60 1.88 48.44 16
24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16
25 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16
26 H -0.25 -11.95 6.54 99.48 0.65 -11.30 16
27 C -0.19 -5.35 8.63 22.49 0.19 -5.15 16
28 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16
29 H 0.04 0.69 7.82 -2.39 -0.02 0.67 16
30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16
32 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16
33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
34 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16
35 H 0.06 0.80 6.93 -2.39 -0.02 0.78 16
36 H 0.15 1.72 5.43 -2.91 -0.02 1.71 16
37 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16
38 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16
39 H 0.43 4.44 8.83 -92.71 -0.82 3.62 16
40 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16
41 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16
42 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16
43 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16
44 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
45 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
46 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16
47 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16
48 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16
49 H 0.11 3.82 6.28 -2.91 -0.02 3.80 16
Total: -1.00 -80.55 395.50 4.50 -76.05
By element:
Atomic # 1 Polarization: 13.24 SS G_CDS: 0.05 Total: 13.30 kcal
Atomic # 6 Polarization: -38.72 SS G_CDS: 4.79 Total: -33.93 kcal
Atomic # 7 Polarization: -73.35 SS G_CDS: -1.32 Total: -74.67 kcal
Atomic # 8 Polarization: -28.28 SS G_CDS: -0.90 Total: -29.18 kcal
Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal
Total: -80.55 4.50 -76.05 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588153995.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.372 kcal
(2) G-P(sol) polarization free energy of solvation -80.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.924 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.049 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds