Wall clock time and date at job start Tue Mar 31 2020 12:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46953 * 2 1 4 4 H 1.08999 * 109.46981 * 54.99649 * 3 2 1 5 5 C 1.53000 * 109.47246 * 175.00258 * 3 2 1 6 6 O 1.42903 * 109.46835 * 295.00033 * 3 2 1 7 7 C 1.35902 * 117.00013 * 155.10426 * 6 3 2 8 8 C 1.38806 * 120.02012 * 5.41170 * 7 6 3 9 9 C 1.38161 * 120.08598 * 179.70477 * 8 7 6 10 10 C 1.38174 * 120.12535 * 0.25656 * 9 8 7 11 11 C 1.38888 * 120.03662 * 0.03716 * 10 9 8 12 12 N 1.39916 * 120.03838 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00410 * 35.82284 * 12 11 10 14 14 O 1.21293 * 119.99915 * 355.46143 * 13 12 11 15 15 C 1.50698 * 120.00339 * 175.46504 * 13 12 11 16 16 C 1.53001 * 109.47532 * 180.02562 * 15 13 12 17 17 C 1.52991 * 109.47351 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47321 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47458 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99880 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99992 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00281 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.47049 * 90.00242 * 23 21 19 25 25 H 1.48498 * 109.47163 * 209.99897 * 23 21 19 26 26 H 1.48492 * 109.47338 * 330.00370 * 23 21 19 27 27 C 1.38578 * 120.01942 * 185.69256 * 7 6 3 28 28 H 1.09004 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47471 * 299.99769 * 1 2 3 30 30 H 1.09003 * 109.47212 * 60.00392 * 1 2 3 31 31 H 1.08998 * 109.47047 * 239.99925 * 2 1 3 32 32 H 1.09003 * 109.46831 * 119.99992 * 2 1 3 33 33 H 1.08992 * 109.47242 * 180.02562 * 5 3 2 34 34 H 1.09008 * 109.46281 * 299.99827 * 5 3 2 35 35 H 1.09001 * 109.47205 * 59.99473 * 5 3 2 36 36 H 1.08002 * 119.95705 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.94008 * 180.27082 * 9 8 7 38 38 H 1.07998 * 119.97777 * 180.02562 * 10 9 8 39 39 H 0.97006 * 120.00126 * 215.82389 * 12 11 10 40 40 H 1.09001 * 109.47055 * 299.99777 * 15 13 12 41 41 H 1.09002 * 109.47163 * 59.99761 * 15 13 12 42 42 H 1.09001 * 109.46680 * 299.99899 * 16 15 13 43 43 H 1.08994 * 109.47369 * 59.99347 * 16 15 13 44 44 H 1.09001 * 109.47277 * 299.99694 * 17 16 15 45 45 H 1.09006 * 109.47610 * 59.99800 * 17 16 15 46 46 H 1.09005 * 109.47472 * 300.00434 * 18 17 16 47 47 H 1.09002 * 109.46873 * 60.00030 * 18 17 16 48 48 H 0.97001 * 120.00425 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.06498 * 0.03542 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0813 -1.2211 7 6 1.5541 3.4359 -1.2011 8 6 1.9152 4.1446 -0.0635 9 6 1.8119 5.5222 -0.0438 10 6 1.3440 6.1985 -1.1542 11 6 0.9756 5.4941 -2.2930 12 7 0.5013 6.1788 -3.4172 13 6 1.0156 7.3820 -3.7401 14 8 1.8300 7.9087 -3.0118 15 6 0.5787 8.0731 -5.0060 16 6 1.3084 9.4118 -5.1343 17 6 0.8653 10.1131 -6.4198 18 6 1.5945 11.4521 -6.5476 19 6 1.1586 12.1426 -7.8142 20 1 0.4337 11.6735 -8.4629 21 6 1.6854 13.3731 -8.1449 22 7 2.5686 13.9441 -7.3552 23 14 1.1445 14.2293 -9.7145 24 1 -0.0336 15.0875 -9.4295 25 1 2.2560 15.0693 -10.2284 26 1 0.7809 13.2120 -10.7332 27 6 1.0782 4.1100 -2.3144 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9281 2.4720 0.1261 34 1 3.8531 0.9570 1.0571 35 1 3.9994 0.9053 -0.7161 36 1 2.2814 3.6187 0.8059 37 1 2.0976 6.0715 0.8411 38 1 1.2647 7.2754 -1.1363 39 1 -0.1978 5.7876 -3.9643 40 1 0.8188 7.4453 -5.8641 41 1 -0.4968 8.2469 -4.9726 42 1 1.0687 10.0398 -4.2762 43 1 2.3838 9.2377 -5.1679 44 1 1.1054 9.4849 -7.2776 45 1 -0.2102 10.2872 -6.3866 46 1 1.3542 12.0801 -5.6898 47 1 2.6701 11.2783 -6.5807 48 1 2.9394 14.8096 -7.5880 49 1 0.7919 3.5599 -3.1986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588153996.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:40 Heat of formation + Delta-G solvation = -81.935746 kcal Electronic energy + Delta-G solvation = -25396.374428 eV Core-core repulsion = 21708.590229 eV Total energy + Delta-G solvation = -3687.784199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89956 -39.99388 -37.85856 -35.12798 -34.78136 -34.34447 -32.64289 -30.97843 -30.25561 -29.96110 -28.92659 -25.75045 -24.50309 -23.46822 -22.90418 -22.27796 -20.92459 -20.24633 -19.99649 -18.70050 -17.21684 -16.52091 -16.47918 -16.17859 -16.01863 -15.60982 -15.35208 -14.62891 -14.46145 -14.34778 -14.05824 -13.96415 -13.79497 -13.69265 -13.51783 -12.71914 -12.64729 -12.50963 -12.24202 -12.12081 -12.06684 -11.71413 -11.62662 -11.57542 -11.51864 -11.11908 -10.98629 -10.91712 -10.55752 -10.51186 -10.42792 -10.35394 -9.83393 -9.61703 -9.23716 -8.99020 -8.67597 -8.30085 -8.18403 -5.94847 -3.97447 1.03620 1.28674 2.53192 2.69553 3.13873 3.34433 3.40540 3.43714 3.60949 4.18449 4.40318 4.49165 4.51713 4.59808 4.72643 4.77974 4.84896 4.98440 5.09388 5.10028 5.13353 5.22514 5.30257 5.31838 5.34457 5.39410 5.40572 5.46878 5.52062 5.63771 5.71018 5.79580 5.81545 6.06451 6.08285 6.10817 6.17320 6.27273 6.35995 6.52005 6.71581 6.81958 6.99769 7.17553 7.19032 7.26675 7.74263 7.89916 8.05997 8.07839 8.48074 9.10230 9.66261 11.16413 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.037726 B = 0.001637 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.007022 B =17102.096538 C =17394.700751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.074 0.926 5 C -0.182 4.182 6 O -0.308 6.308 7 C 0.148 3.852 8 C -0.229 4.229 9 C -0.062 4.062 10 C -0.158 4.158 11 C 0.189 3.811 12 N -0.681 5.681 13 C 0.513 3.487 14 O -0.512 6.512 15 C -0.137 4.137 16 C -0.104 4.104 17 C -0.110 4.110 18 C 0.019 3.981 19 C -0.521 4.521 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C -0.184 4.184 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.141 0.859 39 H 0.412 0.588 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.260 0.740 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -29.764 17.574 34.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.025 3.975 4 H 0.092 0.908 5 C -0.240 4.240 6 O -0.222 6.222 7 C 0.103 3.897 8 C -0.248 4.248 9 C -0.081 4.081 10 C -0.178 4.178 11 C 0.094 3.906 12 N -0.327 5.327 13 C 0.302 3.698 14 O -0.386 6.386 15 C -0.177 4.177 16 C -0.142 4.142 17 C -0.148 4.148 18 C -0.018 4.018 19 C -0.559 4.559 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.205 4.205 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.248 0.752 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.729 -29.303 17.885 34.532 hybrid contribution -0.456 0.357 -0.931 1.097 sum -4.185 -28.946 16.954 33.806 Atomic orbital electron populations 1.21765 0.95061 1.01899 1.02435 1.21638 0.96902 0.93886 1.03217 1.22509 0.95085 0.93886 0.86022 0.90770 1.22397 0.95201 1.03394 1.02974 1.86092 1.83850 1.16666 1.35621 1.18551 0.94969 0.82404 0.93819 1.21233 1.09608 0.95324 0.98632 1.20848 0.96138 0.93251 0.97873 1.21252 1.03515 1.01534 0.91484 1.17437 0.96294 0.90016 0.86842 1.43732 1.40731 1.20643 1.27571 1.21355 0.80471 0.79866 0.88131 1.90717 1.32344 1.63794 1.51698 1.21828 1.02812 0.99099 0.93944 1.21475 1.00033 0.92668 1.00043 1.21651 0.99942 0.98900 0.94313 1.19100 0.95577 0.90315 0.96778 1.21283 1.24359 1.03310 1.06992 0.92741 1.25038 0.95146 0.97469 0.96889 1.69973 1.29409 1.16689 1.37352 0.86610 0.78184 0.79585 0.83694 1.20712 1.21257 1.19930 1.20006 1.09197 0.92343 0.99001 0.92430 0.92808 0.91901 0.90743 0.90073 0.91565 0.91027 0.91365 0.85461 0.85486 0.84138 0.75247 0.88686 0.88698 0.91668 0.91678 0.93404 0.93406 0.96570 0.96562 0.93048 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.81 37.16 0.36 -0.48 16 2 C -0.12 -0.62 5.64 -26.73 -0.15 -0.77 16 3 C 0.08 0.54 2.22 -26.73 -0.06 0.48 16 4 H 0.07 0.45 6.31 -51.93 -0.33 0.13 16 5 C -0.18 -1.08 9.17 37.16 0.34 -0.74 16 6 O -0.31 -2.91 9.33 -19.43 -0.18 -3.09 16 7 C 0.15 1.54 6.60 -39.25 -0.26 1.28 16 8 C -0.23 -2.19 8.24 -39.40 -0.32 -2.52 16 9 C -0.06 -0.65 10.03 -39.63 -0.40 -1.05 16 10 C -0.16 -1.98 8.69 -39.36 -0.34 -2.32 16 11 C 0.19 2.23 6.28 -83.72 -0.53 1.70 16 12 N -0.68 -7.23 5.33 -9.88 -0.05 -7.28 16 13 C 0.51 6.97 7.67 -10.99 -0.08 6.88 16 14 O -0.51 -8.96 13.47 5.55 0.07 -8.88 16 15 C -0.14 -1.73 5.70 -27.88 -0.16 -1.89 16 16 C -0.10 -1.82 4.50 -26.74 -0.12 -1.94 16 17 C -0.11 -2.24 5.15 -26.74 -0.14 -2.38 16 18 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 19 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 20 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 23 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 27 C -0.18 -1.96 9.91 -39.25 -0.39 -2.35 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.42 7.82 -51.93 -0.41 0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.45 6.90 -51.93 -0.36 0.10 16 34 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.13 0.95 5.42 -52.49 -0.28 0.67 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.14 1.99 6.28 -52.49 -0.33 1.66 16 39 H 0.41 2.91 8.82 -40.82 -0.36 2.55 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 43 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -34.12 399.06 -9.59 -43.72 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -8.37 Total: -1.08 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.79 Total: -19.52 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.68 Total: -34.05 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.11 Total: -11.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.12 -9.59 -43.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153996.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.219 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds