Wall clock time and date at job start Tue Mar 31 2020 12:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46953 * 2 1 4 4 H 1.08999 * 109.46981 * 54.99649 * 3 2 1 5 5 C 1.53000 * 109.47246 * 175.00258 * 3 2 1 6 6 O 1.42903 * 109.46835 * 295.00033 * 3 2 1 7 7 C 1.35902 * 117.00013 * 155.10426 * 6 3 2 8 8 C 1.38806 * 120.02012 * 5.41170 * 7 6 3 9 9 C 1.38161 * 120.08598 * 179.70477 * 8 7 6 10 10 C 1.38174 * 120.12535 * 0.25656 * 9 8 7 11 11 C 1.38888 * 120.03662 * 0.03716 * 10 9 8 12 12 N 1.39916 * 120.03838 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00410 * 35.82284 * 12 11 10 14 14 O 1.21293 * 119.99915 * 355.46143 * 13 12 11 15 15 C 1.50698 * 120.00339 * 175.46504 * 13 12 11 16 16 C 1.53001 * 109.47532 * 180.02562 * 15 13 12 17 17 C 1.52991 * 109.47351 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47321 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47458 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99880 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99992 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00281 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.47049 * 90.00242 * 23 21 19 25 25 H 1.48498 * 109.47163 * 209.99897 * 23 21 19 26 26 H 1.48492 * 109.47338 * 330.00370 * 23 21 19 27 27 C 1.38578 * 120.01942 * 185.69256 * 7 6 3 28 28 H 1.09004 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47471 * 299.99769 * 1 2 3 30 30 H 1.09003 * 109.47212 * 60.00392 * 1 2 3 31 31 H 1.08998 * 109.47047 * 239.99925 * 2 1 3 32 32 H 1.09003 * 109.46831 * 119.99992 * 2 1 3 33 33 H 1.08992 * 109.47242 * 180.02562 * 5 3 2 34 34 H 1.09008 * 109.46281 * 299.99827 * 5 3 2 35 35 H 1.09001 * 109.47205 * 59.99473 * 5 3 2 36 36 H 1.08002 * 119.95705 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.94008 * 180.27082 * 9 8 7 38 38 H 1.07998 * 119.97777 * 180.02562 * 10 9 8 39 39 H 0.97006 * 120.00126 * 215.82389 * 12 11 10 40 40 H 1.09001 * 109.47055 * 299.99777 * 15 13 12 41 41 H 1.09002 * 109.47163 * 59.99761 * 15 13 12 42 42 H 1.09001 * 109.46680 * 299.99899 * 16 15 13 43 43 H 1.08994 * 109.47369 * 59.99347 * 16 15 13 44 44 H 1.09001 * 109.47277 * 299.99694 * 17 16 15 45 45 H 1.09006 * 109.47610 * 59.99800 * 17 16 15 46 46 H 1.09005 * 109.47472 * 300.00434 * 18 17 16 47 47 H 1.09002 * 109.46873 * 60.00030 * 18 17 16 48 48 H 0.97001 * 120.00425 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.06498 * 0.03542 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0813 -1.2211 7 6 1.5541 3.4359 -1.2011 8 6 1.9152 4.1446 -0.0635 9 6 1.8119 5.5222 -0.0438 10 6 1.3440 6.1985 -1.1542 11 6 0.9756 5.4941 -2.2930 12 7 0.5013 6.1788 -3.4172 13 6 1.0156 7.3820 -3.7401 14 8 1.8300 7.9087 -3.0118 15 6 0.5787 8.0731 -5.0060 16 6 1.3084 9.4118 -5.1343 17 6 0.8653 10.1131 -6.4198 18 6 1.5945 11.4521 -6.5476 19 6 1.1586 12.1426 -7.8142 20 1 0.4337 11.6735 -8.4629 21 6 1.6854 13.3731 -8.1449 22 7 2.5686 13.9441 -7.3552 23 14 1.1445 14.2293 -9.7145 24 1 -0.0336 15.0875 -9.4295 25 1 2.2560 15.0693 -10.2284 26 1 0.7809 13.2120 -10.7332 27 6 1.0782 4.1100 -2.3144 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9281 2.4720 0.1261 34 1 3.8531 0.9570 1.0571 35 1 3.9994 0.9053 -0.7161 36 1 2.2814 3.6187 0.8059 37 1 2.0976 6.0715 0.8411 38 1 1.2647 7.2754 -1.1363 39 1 -0.1978 5.7876 -3.9643 40 1 0.8188 7.4453 -5.8641 41 1 -0.4968 8.2469 -4.9726 42 1 1.0687 10.0398 -4.2762 43 1 2.3838 9.2377 -5.1679 44 1 1.1054 9.4849 -7.2776 45 1 -0.2102 10.2872 -6.3866 46 1 1.3542 12.0801 -5.6898 47 1 2.6701 11.2783 -6.5807 48 1 2.9394 14.8096 -7.5880 49 1 0.7919 3.5599 -3.1986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588153996.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:39 Heat of formation + Delta-G solvation = -101.391080 kcal Electronic energy + Delta-G solvation = -25397.218075 eV Core-core repulsion = 21708.590229 eV Total energy + Delta-G solvation = -3688.627846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.76596 -40.85092 -38.70510 -36.66113 -35.77681 -34.99604 -34.60695 -31.92409 -31.40979 -30.64571 -30.05179 -27.47130 -25.11828 -24.65786 -23.71798 -23.44580 -21.96237 -21.49378 -21.15327 -19.45554 -18.41061 -18.23074 -17.31374 -17.20534 -17.07292 -16.50367 -16.47155 -16.13832 -15.54731 -15.32480 -14.96677 -14.77274 -14.58988 -14.53077 -14.33254 -14.13991 -13.79539 -13.60858 -13.36812 -13.30492 -13.01607 -12.85562 -12.80734 -12.64942 -12.34361 -12.16624 -12.15559 -12.13412 -12.00574 -11.71237 -11.46179 -11.38026 -11.34701 -11.23213 -11.11055 -10.78328 -10.54322 -9.50193 -9.02906 -8.18163 -6.30322 0.19364 0.44380 1.40825 1.42990 1.53923 1.54190 1.87147 2.38367 2.42836 2.77714 3.14630 3.68534 3.71729 3.87057 3.96180 4.01889 4.02995 4.14713 4.16482 4.25415 4.28021 4.43101 4.51848 4.57252 4.65944 4.68253 4.68297 4.71613 4.83164 4.84878 4.87997 4.97589 5.09252 5.16550 5.19120 5.23291 5.26091 5.26618 5.31959 5.35146 5.38986 5.42409 5.51600 5.57868 5.79096 5.85603 5.89057 6.25939 6.39723 6.48062 6.88305 7.11539 7.39371 8.93948 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.037726 B = 0.001637 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.007022 B =17102.096538 C =17394.700751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C 0.073 3.927 4 H 0.082 0.918 5 C -0.180 4.180 6 O -0.318 6.318 7 C 0.145 3.855 8 C -0.224 4.224 9 C -0.066 4.066 10 C -0.182 4.182 11 C 0.174 3.826 12 N -0.663 5.663 13 C 0.513 3.487 14 O -0.560 6.560 15 C -0.125 4.125 16 C -0.097 4.097 17 C -0.096 4.096 18 C 0.017 3.983 19 C -0.543 4.543 20 H 0.066 0.934 21 C -0.006 4.006 22 N -0.937 5.937 23 Si 0.969 3.031 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.259 1.259 27 C -0.187 4.187 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.430 0.570 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.062 0.938 46 H -0.015 1.015 47 H -0.016 1.016 48 H 0.262 0.738 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 -32.125 17.027 36.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.238 4.238 6 O -0.232 6.232 7 C 0.098 3.902 8 C -0.243 4.243 9 C -0.084 4.084 10 C -0.203 4.203 11 C 0.079 3.921 12 N -0.310 5.310 13 C 0.303 3.697 14 O -0.438 6.438 15 C -0.164 4.164 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.020 4.020 19 C -0.581 4.581 20 H 0.085 0.915 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.793 3.207 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.183 1.183 27 C -0.208 4.208 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.136 0.864 39 H 0.269 0.731 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.004 0.996 47 H 0.003 0.997 48 H 0.071 0.929 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.173 -31.720 17.331 36.514 hybrid contribution 0.022 1.010 -0.664 1.209 sum -5.151 -30.710 16.667 35.319 Atomic orbital electron populations 1.21764 0.95333 1.02343 1.01741 1.21672 0.96621 0.92974 1.04085 1.22787 0.95662 0.94552 0.85226 0.90037 1.22394 0.94553 1.02887 1.03932 1.86096 1.83759 1.16042 1.37291 1.18712 0.94509 0.83057 0.93896 1.21464 1.08678 0.94921 0.99229 1.21064 0.95624 0.93878 0.97882 1.21238 1.05345 1.00682 0.93004 1.17539 0.97061 0.90568 0.86892 1.43483 1.40571 1.19595 1.27323 1.21486 0.79865 0.80394 0.87960 1.90713 1.34684 1.65183 1.53178 1.21698 1.03781 0.96430 0.94482 1.21260 0.99377 0.95091 0.97785 1.21447 0.99869 0.95813 0.96221 1.19069 0.94425 0.93335 0.95145 1.21770 1.24584 1.03910 1.07800 0.91535 1.26083 0.95031 0.98427 1.00809 1.70132 1.30776 1.17229 1.39636 0.85387 0.77833 0.78442 0.79003 1.19712 1.20988 1.18341 1.20147 1.08998 0.91842 0.99813 0.91464 0.92509 0.93560 0.91137 0.87903 0.92640 0.88839 0.91911 0.83231 0.83835 0.86441 0.73060 0.85831 0.85595 0.93586 0.93828 0.92022 0.91883 0.99642 0.99730 0.92894 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.81 71.98 0.71 -0.72 16 2 C -0.12 -0.96 5.64 30.59 0.17 -0.79 16 3 C 0.07 0.83 2.22 30.59 0.07 0.90 16 4 H 0.08 0.81 6.31 -2.39 -0.02 0.79 16 5 C -0.18 -1.79 9.17 71.98 0.66 -1.13 16 6 O -0.32 -5.56 9.33 -92.45 -0.86 -6.42 16 7 C 0.14 2.83 6.60 22.49 0.15 2.98 16 8 C -0.22 -4.03 8.24 22.39 0.18 -3.85 16 9 C -0.07 -1.37 10.03 22.24 0.22 -1.14 16 10 C -0.18 -4.71 8.69 22.41 0.19 -4.51 16 11 C 0.17 4.06 6.28 38.14 0.24 4.30 16 12 N -0.66 -13.39 5.33 -303.55 -1.62 -15.01 16 13 C 0.51 13.76 7.67 87.66 0.67 14.44 16 14 O -0.56 -20.43 13.47 -3.07 -0.04 -20.47 16 15 C -0.12 -2.92 5.70 29.85 0.17 -2.75 16 16 C -0.10 -3.42 4.50 30.59 0.14 -3.28 16 17 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 18 C 0.02 0.95 4.97 29.85 0.15 1.10 16 19 C -0.54 -31.51 9.11 25.60 0.23 -31.28 16 20 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 21 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 22 N -0.94 -59.12 13.29 21.45 0.28 -58.83 16 23 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 27 C -0.19 -3.80 9.91 22.49 0.22 -3.57 16 28 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.58 7.82 -2.39 -0.02 0.56 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.68 6.90 -2.39 -0.02 0.66 16 34 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.15 1.93 5.42 -2.91 -0.02 1.92 16 37 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.12 3.57 6.28 -2.91 -0.02 3.55 16 39 H 0.43 5.15 8.82 -92.70 -0.82 4.34 16 40 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 43 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 46 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 47 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 48 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -77.06 399.06 4.70 -72.36 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.11 Total: 14.39 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 4.80 Total: -32.94 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.33 Total: -73.85 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.90 Total: -26.89 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -77.06 4.70 -72.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153996.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.026 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds