Wall clock time and date at job start Tue Mar 31 2020 14:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 O 1.42904 * 109.46734 * 120.00184 * 2 1 3 5 5 C 1.42904 * 113.99731 * 150.00182 * 4 2 1 6 6 C 1.50700 * 109.46730 * 179.97438 * 5 4 2 7 7 C 1.38287 * 119.92785 * 269.72040 * 6 5 4 8 8 C 1.38111 * 120.06973 * 179.76724 * 7 6 5 9 9 C 1.38870 * 119.92708 * 0.51227 * 8 7 6 10 10 N 1.39927 * 120.07090 * 179.72139 * 9 8 7 11 11 C 1.34775 * 120.00196 * 213.31185 * 10 9 8 12 12 O 1.21280 * 120.00082 * 5.27118 * 11 10 9 13 13 C 1.50699 * 119.99855 * 185.27094 * 11 10 9 14 14 C 1.53005 * 109.46947 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47099 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47227 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47076 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00331 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99806 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00046 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00076 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47001 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47005 * 119.99998 * 21 19 17 24 24 H 1.48497 * 109.47363 * 240.00019 * 21 19 17 25 25 C 1.38870 * 119.86152 * 359.74522 * 9 8 7 26 26 C 1.38115 * 119.92872 * 359.97438 * 25 9 8 27 27 H 1.08999 * 109.47373 * 300.00249 * 1 2 3 28 28 H 1.09003 * 109.46987 * 60.00255 * 1 2 3 29 29 H 1.09007 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46884 * 239.99626 * 2 1 3 31 31 H 1.08998 * 109.46595 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47021 * 299.99725 * 3 2 1 33 33 H 1.08999 * 109.47239 * 59.99669 * 3 2 1 34 34 H 1.08996 * 109.46757 * 299.99496 * 5 4 2 35 35 H 1.09001 * 109.47238 * 59.99964 * 5 4 2 36 36 H 1.08001 * 119.96104 * 0.02562 * 7 6 5 37 37 H 1.07995 * 120.03350 * 180.25045 * 8 7 6 38 38 H 0.97002 * 119.99438 * 33.30499 * 10 9 8 39 39 H 1.09002 * 109.47579 * 300.00082 * 13 11 10 40 40 H 1.09000 * 109.47274 * 60.00227 * 13 11 10 41 41 H 1.08994 * 109.47148 * 299.99952 * 14 13 11 42 42 H 1.08996 * 109.46913 * 60.00653 * 14 13 11 43 43 H 1.09002 * 109.47572 * 300.00526 * 15 14 13 44 44 H 1.09005 * 109.47042 * 60.00105 * 15 14 13 45 45 H 1.08999 * 109.47535 * 300.00258 * 16 15 14 46 46 H 1.08996 * 109.46838 * 60.00705 * 16 15 14 47 47 H 0.97007 * 119.99969 * 179.97438 * 20 19 17 48 48 H 1.07998 * 120.03565 * 179.97438 * 25 9 8 49 49 H 1.08002 * 119.96100 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3246 0.9886 6 6 3.6698 -1.9979 2.2750 7 6 4.4245 -1.3092 3.2069 8 6 4.7921 -1.9219 4.3888 9 6 4.4120 -3.2344 4.6362 10 7 4.7878 -3.8600 5.8301 11 6 5.0469 -5.1825 5.8455 12 8 5.0481 -5.8123 4.8090 13 6 5.3353 -5.8787 7.1505 14 6 5.5932 -7.3642 6.8900 15 6 5.8866 -8.0709 8.2148 16 6 6.1439 -9.5564 7.9544 17 6 6.4322 -10.2526 9.2595 18 1 6.4316 -9.6918 10.1824 19 6 6.6969 -11.6057 9.2752 20 7 6.6981 -12.2886 8.1513 21 14 7.0536 -12.4689 10.8930 22 1 6.9916 -11.4848 12.0033 23 1 6.0436 -13.5337 11.1190 24 1 8.4086 -13.0745 10.8427 25 6 3.6586 -3.9251 3.6960 26 6 3.2893 -3.3048 2.5185 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1808 -2.0707 0.1987 35 1 4.0200 -0.5874 0.7126 36 1 4.7232 -0.2898 3.0119 37 1 5.3781 -1.3821 5.1179 38 1 4.8618 -3.3417 6.6467 39 1 6.2154 -5.4325 7.6137 40 1 4.4796 -5.7703 7.8170 41 1 4.7129 -7.8100 6.4271 42 1 6.4488 -7.4729 6.2235 43 1 6.7671 -7.6249 8.6775 44 1 5.0313 -7.9622 8.8818 45 1 5.2632 -10.0022 7.4921 46 1 6.9990 -9.6655 7.2874 47 1 6.8847 -13.2405 8.1623 48 1 3.3619 -4.9461 3.8854 49 1 2.7038 -3.8416 1.7868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588154054.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:19 Heat of formation + Delta-G solvation = -89.248222 kcal Electronic energy + Delta-G solvation = -24970.647311 eV Core-core repulsion = 21282.546019 eV Total energy + Delta-G solvation = -3688.101292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.67886 -39.24794 -38.22366 -35.28784 -34.81449 -33.22306 -32.64238 -31.15118 -30.83205 -29.53382 -27.69234 -26.38402 -25.17020 -23.26967 -22.63593 -21.72064 -21.38011 -20.24336 -20.00759 -17.92739 -17.25080 -16.95625 -16.30430 -16.15127 -16.02077 -15.63127 -14.95067 -14.66929 -14.54168 -14.31525 -14.01938 -13.75648 -13.62618 -13.53045 -13.14867 -12.82677 -12.72495 -12.61596 -12.54885 -12.22464 -11.86061 -11.75823 -11.61941 -11.54839 -11.39158 -11.11912 -11.00597 -10.57312 -10.49061 -10.45453 -10.43845 -9.96222 -9.88478 -9.62800 -9.24793 -9.09706 -8.98226 -8.31041 -8.25894 -5.95606 -3.98133 0.97135 1.23342 2.54691 2.92828 3.25505 3.33063 3.40341 3.44183 3.80248 4.39490 4.48440 4.50031 4.59845 4.66445 4.71885 4.75839 4.81623 4.94222 4.98760 5.15130 5.19882 5.23680 5.29790 5.32609 5.36762 5.39854 5.39983 5.42291 5.48237 5.72882 5.76595 5.77339 5.84756 6.03650 6.09829 6.14484 6.26541 6.32434 6.39649 6.51550 6.80973 6.83143 6.88340 6.98888 7.17830 7.25274 7.73851 7.89145 8.05223 8.06843 8.47418 9.09777 9.65703 11.15707 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.040296 B = 0.001526 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.693630 B =18338.376777 C =18697.483653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.175 4.175 4 O -0.376 6.376 5 C 0.107 3.893 6 C -0.114 4.114 7 C -0.078 4.078 8 C -0.153 4.153 9 C 0.161 3.839 10 N -0.682 5.682 11 C 0.512 3.488 12 O -0.513 6.513 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.125 4.125 26 C -0.077 4.077 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.411 0.589 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.138 0.862 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.114 30.150 -14.808 34.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.296 6.296 5 C 0.031 3.969 6 C -0.115 4.115 7 C -0.097 4.097 8 C -0.174 4.174 9 C 0.066 3.934 10 N -0.328 5.328 11 C 0.301 3.699 12 O -0.386 6.386 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.145 4.145 26 C -0.095 4.095 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.247 0.753 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.155 0.845 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.177 29.438 -15.394 34.464 hybrid contribution 0.470 -0.235 1.054 1.177 sum -8.707 29.203 -14.340 33.679 Atomic orbital electron populations 1.21866 0.93574 1.02822 1.02480 1.22093 0.95090 0.92427 0.88287 1.22305 1.01502 0.96872 1.02607 1.88037 1.36284 1.69851 1.35434 1.21292 0.85910 0.95108 0.94565 1.19488 1.01004 0.94475 0.96535 1.20762 0.97152 0.99178 0.92629 1.20852 1.03186 0.94647 0.98697 1.17851 0.95245 0.92419 0.87871 1.43801 1.68810 1.09926 1.10277 1.21354 0.75108 0.80898 0.92586 1.90725 1.48621 1.64786 1.34510 1.21832 1.03779 0.98595 0.93538 1.21476 1.02578 0.90483 0.99683 1.21652 0.99844 0.99047 0.94261 1.19103 0.97053 0.88779 0.96867 1.21319 1.47438 0.93460 0.93646 0.92688 1.25041 0.95627 0.97697 0.96183 1.69987 1.49780 1.07888 1.25772 0.86559 0.77858 0.79630 0.84081 1.19769 1.21054 1.21052 1.21191 0.97867 1.01233 0.94221 1.20920 0.97955 0.93964 0.96686 0.91757 0.91318 0.91917 0.92256 0.92518 0.91705 0.91723 0.92519 0.92659 0.85789 0.85579 0.75321 0.88781 0.88654 0.91682 0.91687 0.93409 0.93406 0.96562 0.96563 0.93102 0.84467 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.56 37.16 0.36 -0.51 16 2 C 0.08 0.52 3.34 -26.73 -0.09 0.43 16 3 C -0.18 -0.95 9.53 37.16 0.35 -0.60 16 4 O -0.38 -3.47 9.97 -35.23 -0.35 -3.82 16 5 C 0.11 0.87 5.87 36.01 0.21 1.09 16 6 C -0.11 -1.14 5.51 -104.59 -0.58 -1.71 16 7 C -0.08 -0.72 9.69 -39.61 -0.38 -1.11 16 8 C -0.15 -1.46 9.96 -39.39 -0.39 -1.85 16 9 C 0.16 1.86 6.28 -83.69 -0.53 1.33 16 10 N -0.68 -7.14 5.34 -9.86 -0.05 -7.19 16 11 C 0.51 6.93 7.57 -10.99 -0.08 6.84 16 12 O -0.51 -8.99 13.67 5.56 0.08 -8.91 16 13 C -0.14 -1.73 5.70 -27.88 -0.16 -1.89 16 14 C -0.10 -1.81 4.50 -26.73 -0.12 -1.93 16 15 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 16 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 17 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.12 -1.59 8.66 -39.39 -0.34 -1.93 16 26 C -0.08 -0.85 9.69 -39.61 -0.38 -1.23 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 31 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.41 8.03 -51.93 -0.42 -0.01 16 35 H 0.06 0.37 7.81 -51.93 -0.41 -0.03 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.41 2.83 8.82 -40.82 -0.36 2.47 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 42 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.14 1.95 6.41 -52.49 -0.34 1.61 16 49 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -34.51 406.40 -9.94 -44.46 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.63 Total: -1.91 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.82 Total: -18.85 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.68 Total: -33.95 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.28 Total: -12.73 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.51 -9.94 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154054.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.791 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds