Wall clock time and date at job start Tue Mar 31 2020 14:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46914 * 2 1 4 4 O 1.42899 * 109.46977 * 120.00273 * 2 1 3 5 5 C 1.42900 * 114.00217 * 89.99951 * 4 2 1 6 6 C 1.50694 * 109.47447 * 179.97438 * 5 4 2 7 7 C 1.38304 * 119.96585 * 269.97954 * 6 5 4 8 8 C 1.38263 * 120.14321 * 180.02562 * 7 6 5 9 9 C 1.38140 * 120.06595 * 359.67702 * 8 7 6 10 10 C 1.38845 * 119.92759 * 0.59742 * 9 8 7 11 11 N 1.39931 * 120.06767 * 179.69839 * 10 9 8 12 12 C 1.34778 * 119.99802 * 326.55021 * 11 10 9 13 13 O 1.21290 * 120.00242 * 354.72922 * 12 11 10 14 14 C 1.50705 * 119.99779 * 174.72746 * 12 11 10 15 15 C 1.53001 * 109.46848 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.46602 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.46434 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.46681 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99706 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00515 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47277 * 90.00043 * 22 20 18 24 24 H 1.48500 * 109.46913 * 210.00246 * 22 20 18 25 25 H 1.48506 * 109.46917 * 329.99978 * 22 20 18 26 26 C 1.38089 * 119.96715 * 89.99982 * 6 5 4 27 27 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47306 * 299.99720 * 1 2 3 29 29 H 1.08992 * 109.47149 * 59.99548 * 1 2 3 30 30 H 1.08997 * 109.46742 * 239.99949 * 2 1 3 31 31 H 1.09001 * 109.46737 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47582 * 300.00187 * 3 2 1 33 33 H 1.09007 * 109.47333 * 60.00326 * 3 2 1 34 34 H 1.09006 * 109.46954 * 59.99671 * 5 4 2 35 35 H 1.09000 * 109.47327 * 299.99917 * 5 4 2 36 36 H 1.08005 * 119.93163 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.96605 * 179.97438 * 8 7 6 38 38 H 1.08001 * 120.03164 * 180.32210 * 9 8 7 39 39 H 0.96995 * 119.99879 * 146.55091 * 11 10 9 40 40 H 1.08999 * 109.46557 * 60.00179 * 14 12 11 41 41 H 1.08999 * 109.47090 * 300.00185 * 14 12 11 42 42 H 1.08999 * 109.47457 * 299.99998 * 15 14 12 43 43 H 1.08994 * 109.46896 * 60.00670 * 15 14 12 44 44 H 1.08997 * 109.47294 * 299.99569 * 16 15 14 45 45 H 1.08994 * 109.47093 * 60.00614 * 16 15 14 46 46 H 1.08999 * 109.47253 * 299.99595 * 17 16 15 47 47 H 1.08999 * 109.47736 * 60.00410 * 17 16 15 48 48 H 0.97001 * 120.00185 * 179.97438 * 21 20 18 49 49 H 1.08009 * 120.03194 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9886 6 6 2.7014 -2.6833 2.2744 7 6 4.0607 -2.7614 2.5173 8 6 4.5247 -3.3163 3.6956 9 6 3.6310 -3.7887 4.6372 10 6 2.2659 -3.7170 4.3938 11 7 1.3583 -4.2003 5.3428 12 6 1.6808 -5.2662 6.1020 13 8 2.7158 -5.8649 5.8984 14 6 0.7555 -5.7140 7.2040 15 6 1.3520 -6.9356 7.9059 16 6 0.4122 -7.3906 9.0243 17 6 1.0090 -8.6119 9.7265 18 6 0.0837 -9.0597 10.8285 19 1 -0.8377 -8.5263 11.0101 20 6 0.4134 -10.1504 11.6049 21 7 1.5356 -10.7997 11.3841 22 14 -0.7339 -10.7059 12.9704 23 1 -1.7021 -11.6948 12.4319 24 1 0.0589 -11.3315 14.0591 25 1 -1.4706 -9.5328 13.5058 26 6 1.8031 -3.1597 3.2088 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 2.9320 -2.2467 0.1985 35 1 1.2538 -2.5434 0.7124 36 1 4.7613 -2.3880 1.7850 37 1 5.5868 -3.3762 3.8822 38 1 3.9940 -4.2173 5.5597 39 1 0.4970 -3.7683 5.4541 40 1 -0.2139 -5.9761 6.7802 41 1 0.6305 -4.9056 7.9244 42 1 1.4766 -7.7439 7.1852 43 1 2.3215 -6.6738 8.3296 44 1 0.2872 -6.5826 9.7450 45 1 -0.5571 -7.6526 8.6002 46 1 1.1344 -9.4201 9.0060 47 1 1.9782 -8.3496 10.1506 48 1 1.7677 -11.5667 11.9306 49 1 0.7417 -3.0992 3.0182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588154093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:22 Heat of formation + Delta-G solvation = -89.021406 kcal Electronic energy + Delta-G solvation = -25095.073163 eV Core-core repulsion = 21406.981707 eV Total energy + Delta-G solvation = -3688.091456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67929 -39.25886 -38.24041 -35.21936 -34.77448 -33.47419 -32.64656 -31.46597 -30.49407 -29.18432 -27.73105 -26.29501 -25.73749 -23.18542 -22.53125 -21.75733 -21.50606 -20.02505 -20.00521 -17.84915 -17.16316 -16.87981 -16.41611 -16.14159 -16.06103 -15.64892 -15.32184 -14.81707 -14.47624 -14.19984 -14.14242 -13.77541 -13.67964 -13.45265 -13.01747 -12.80934 -12.65819 -12.62914 -12.40251 -12.17985 -11.93796 -11.78784 -11.68453 -11.60877 -11.39974 -11.17204 -10.99197 -10.56814 -10.50934 -10.46859 -10.43256 -10.00494 -9.86918 -9.62363 -9.24228 -9.05886 -8.99043 -8.30497 -8.27684 -5.95223 -3.97856 1.05542 1.12730 2.56524 2.93081 3.24307 3.34124 3.40218 3.43336 3.77410 4.34670 4.48810 4.50022 4.59819 4.60438 4.68762 4.74032 4.84110 4.94189 5.02733 5.13219 5.17398 5.23006 5.29973 5.30404 5.34666 5.36675 5.38669 5.40213 5.47724 5.69907 5.73720 5.74721 5.81270 6.10163 6.11508 6.16720 6.26698 6.34939 6.36080 6.51733 6.81229 6.81399 6.85859 6.99195 7.18178 7.26312 7.73787 7.89421 8.05628 8.07845 8.47604 9.09783 9.65879 11.16035 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032380 B = 0.001608 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.521836 B =17403.752980 C =18040.475966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.375 6.375 5 C 0.106 3.894 6 C -0.075 4.075 7 C -0.118 4.118 8 C -0.102 4.102 9 C -0.114 4.114 10 C 0.151 3.849 11 N -0.682 5.682 12 C 0.512 3.488 13 O -0.514 6.514 14 C -0.137 4.137 15 C -0.104 4.104 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.128 4.128 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.411 0.589 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.260 0.740 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 24.469 -25.378 35.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.295 6.295 5 C 0.030 3.970 6 C -0.076 4.076 7 C -0.137 4.137 8 C -0.121 4.121 9 C -0.135 4.135 10 C 0.056 3.944 11 N -0.328 5.328 12 C 0.301 3.699 13 O -0.387 6.387 14 C -0.177 4.177 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.149 4.149 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.246 0.754 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.080 23.933 -25.206 34.775 hybrid contribution -1.160 -0.327 0.569 1.333 sum -0.080 23.606 -24.636 34.120 Atomic orbital electron populations 1.22310 0.95976 1.02395 1.02675 1.22098 0.93688 0.93874 0.88191 1.21862 1.01842 0.94466 1.02549 1.88032 1.86540 1.19441 1.35510 1.21314 0.99498 0.81804 0.94408 1.19264 0.93351 0.99476 0.95472 1.20979 0.94632 1.00228 0.97846 1.21041 0.99764 0.97721 0.93526 1.21264 0.91546 0.99778 1.00872 1.17737 0.89915 0.97348 0.89375 1.43766 1.19608 1.32011 1.37379 1.21351 0.87735 0.78459 0.82392 1.90725 1.25889 1.53685 1.68447 1.21829 0.98870 1.01403 0.95633 1.21476 0.99741 0.94828 0.98165 1.21652 0.97585 0.99956 0.95614 1.19099 0.96150 0.91663 0.94851 1.21285 1.05997 1.12811 1.15861 0.92746 1.25038 0.95256 0.96636 0.97594 1.69974 1.23002 1.20333 1.40112 0.86613 0.80795 0.78815 0.81863 1.20714 1.21246 1.19926 1.20719 0.99696 1.02419 0.92039 0.92476 0.91669 0.91662 0.92251 0.91965 0.91278 0.91721 0.92367 0.92525 0.86017 0.85480 0.84549 0.75364 0.88807 0.88661 0.91690 0.91683 0.93403 0.93418 0.96576 0.96559 0.93045 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 9.53 37.16 0.35 -0.59 16 2 C 0.08 0.49 3.34 -26.73 -0.09 0.40 16 3 C -0.15 -0.79 9.56 37.16 0.36 -0.44 16 4 O -0.38 -3.29 9.97 -35.23 -0.35 -3.65 16 5 C 0.11 0.82 5.87 36.00 0.21 1.03 16 6 C -0.07 -0.72 5.51 -104.65 -0.58 -1.30 16 7 C -0.12 -1.13 9.70 -39.55 -0.38 -1.52 16 8 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 9 C -0.11 -1.44 8.66 -39.39 -0.34 -1.78 16 10 C 0.15 1.76 6.28 -83.70 -0.53 1.24 16 11 N -0.68 -7.26 5.34 -9.86 -0.05 -7.31 16 12 C 0.51 6.97 7.57 -10.98 -0.08 6.89 16 13 O -0.51 -9.03 13.68 5.55 0.08 -8.95 16 14 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 15 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 16 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 22 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.13 -1.29 9.62 -39.40 -0.38 -1.67 16 27 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 7.79 -51.93 -0.40 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.37 8.03 -51.93 -0.42 -0.05 16 35 H 0.06 0.38 7.81 -51.93 -0.41 -0.03 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.14 1.92 6.43 -52.49 -0.34 1.58 16 39 H 0.41 2.96 8.82 -40.82 -0.36 2.60 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 43 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 406.42 15.07 6.12 6.12 Total: -1.00 -34.45 406.42 -9.94 -44.39 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.63 Total: -1.86 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -2.82 Total: -18.86 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.68 Total: -34.08 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.28 Total: -12.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.45 -9.94 -44.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.631 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds