Wall clock time and date at job start Tue Mar 31 2020 14:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46914 * 2 1 4 4 O 1.42899 * 109.46977 * 120.00273 * 2 1 3 5 5 C 1.42900 * 114.00217 * 89.99951 * 4 2 1 6 6 C 1.50694 * 109.47447 * 179.97438 * 5 4 2 7 7 C 1.38304 * 119.96585 * 269.97954 * 6 5 4 8 8 C 1.38263 * 120.14321 * 180.02562 * 7 6 5 9 9 C 1.38140 * 120.06595 * 359.67702 * 8 7 6 10 10 C 1.38845 * 119.92759 * 0.59742 * 9 8 7 11 11 N 1.39931 * 120.06767 * 179.69839 * 10 9 8 12 12 C 1.34778 * 119.99802 * 326.55021 * 11 10 9 13 13 O 1.21290 * 120.00242 * 354.72922 * 12 11 10 14 14 C 1.50705 * 119.99779 * 174.72746 * 12 11 10 15 15 C 1.53001 * 109.46848 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.46602 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.46434 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.46681 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99706 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00515 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47277 * 90.00043 * 22 20 18 24 24 H 1.48500 * 109.46913 * 210.00246 * 22 20 18 25 25 H 1.48506 * 109.46917 * 329.99978 * 22 20 18 26 26 C 1.38089 * 119.96715 * 89.99982 * 6 5 4 27 27 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47306 * 299.99720 * 1 2 3 29 29 H 1.08992 * 109.47149 * 59.99548 * 1 2 3 30 30 H 1.08997 * 109.46742 * 239.99949 * 2 1 3 31 31 H 1.09001 * 109.46737 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47582 * 300.00187 * 3 2 1 33 33 H 1.09007 * 109.47333 * 60.00326 * 3 2 1 34 34 H 1.09006 * 109.46954 * 59.99671 * 5 4 2 35 35 H 1.09000 * 109.47327 * 299.99917 * 5 4 2 36 36 H 1.08005 * 119.93163 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.96605 * 179.97438 * 8 7 6 38 38 H 1.08001 * 120.03164 * 180.32210 * 9 8 7 39 39 H 0.96995 * 119.99879 * 146.55091 * 11 10 9 40 40 H 1.08999 * 109.46557 * 60.00179 * 14 12 11 41 41 H 1.08999 * 109.47090 * 300.00185 * 14 12 11 42 42 H 1.08999 * 109.47457 * 299.99998 * 15 14 12 43 43 H 1.08994 * 109.46896 * 60.00670 * 15 14 12 44 44 H 1.08997 * 109.47294 * 299.99569 * 16 15 14 45 45 H 1.08994 * 109.47093 * 60.00614 * 16 15 14 46 46 H 1.08999 * 109.47253 * 299.99595 * 17 16 15 47 47 H 1.08999 * 109.47736 * 60.00410 * 17 16 15 48 48 H 0.97001 * 120.00185 * 179.97438 * 21 20 18 49 49 H 1.08009 * 120.03194 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9886 6 6 2.7014 -2.6833 2.2744 7 6 4.0607 -2.7614 2.5173 8 6 4.5247 -3.3163 3.6956 9 6 3.6310 -3.7887 4.6372 10 6 2.2659 -3.7170 4.3938 11 7 1.3583 -4.2003 5.3428 12 6 1.6808 -5.2662 6.1020 13 8 2.7158 -5.8649 5.8984 14 6 0.7555 -5.7140 7.2040 15 6 1.3520 -6.9356 7.9059 16 6 0.4122 -7.3906 9.0243 17 6 1.0090 -8.6119 9.7265 18 6 0.0837 -9.0597 10.8285 19 1 -0.8377 -8.5263 11.0101 20 6 0.4134 -10.1504 11.6049 21 7 1.5356 -10.7997 11.3841 22 14 -0.7339 -10.7059 12.9704 23 1 -1.7021 -11.6948 12.4319 24 1 0.0589 -11.3315 14.0591 25 1 -1.4706 -9.5328 13.5058 26 6 1.8031 -3.1597 3.2088 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 2.9320 -2.2467 0.1985 35 1 1.2538 -2.5434 0.7124 36 1 4.7613 -2.3880 1.7850 37 1 5.5868 -3.3762 3.8822 38 1 3.9940 -4.2173 5.5597 39 1 0.4970 -3.7683 5.4541 40 1 -0.2139 -5.9761 6.7802 41 1 0.6305 -4.9056 7.9244 42 1 1.4766 -7.7439 7.1852 43 1 2.3215 -6.6738 8.3296 44 1 0.2872 -6.5826 9.7450 45 1 -0.5571 -7.6526 8.6002 46 1 1.1344 -9.4201 9.0060 47 1 1.9782 -8.3496 10.1506 48 1 1.7677 -11.5667 11.9306 49 1 0.7417 -3.0992 3.0182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588154093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:21 Heat of formation + Delta-G solvation = -109.041826 kcal Electronic energy + Delta-G solvation = -25095.941314 eV Core-core repulsion = 21406.981707 eV Total energy + Delta-G solvation = -3688.959607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.62804 -40.03673 -38.93028 -36.70971 -35.91819 -34.63728 -34.01516 -32.16513 -31.86094 -30.44419 -28.12866 -27.48840 -26.94838 -24.69235 -23.36833 -22.77654 -22.19132 -21.65822 -21.00201 -18.71506 -18.40335 -17.91107 -17.64208 -17.23272 -17.00074 -16.53016 -16.45527 -15.97667 -15.71724 -15.29372 -15.14374 -14.66770 -14.53768 -14.39124 -14.11638 -13.84211 -13.60809 -13.50919 -13.40462 -13.29816 -13.06364 -12.94758 -12.81587 -12.53413 -12.34583 -12.26205 -12.17501 -12.14675 -12.11037 -11.63736 -11.42347 -11.36791 -11.31470 -11.14583 -10.78753 -10.54774 -10.51444 -9.86622 -9.14033 -8.18539 -6.30762 0.22099 0.32374 1.40560 1.42742 1.53796 1.55945 2.01913 2.42139 2.57907 3.09314 3.14289 3.68146 3.79364 3.89333 4.00404 4.06340 4.13562 4.14058 4.17781 4.30440 4.32734 4.37703 4.43126 4.54184 4.64405 4.67536 4.73384 4.77884 4.82504 4.86699 4.90863 4.94590 4.98028 4.98394 5.18096 5.28643 5.32349 5.33040 5.34128 5.35459 5.38812 5.51793 5.57082 5.58535 5.78318 5.88309 6.01721 6.25393 6.33119 6.40491 6.87794 7.11776 7.38989 8.93588 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032380 B = 0.001608 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.521836 B =17403.752980 C =18040.475966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.397 6.397 5 C 0.107 3.893 6 C -0.079 4.079 7 C -0.118 4.118 8 C -0.109 4.109 9 C -0.140 4.140 10 C 0.132 3.868 11 N -0.664 5.664 12 C 0.512 3.488 13 O -0.563 6.563 14 C -0.125 4.125 15 C -0.097 4.097 16 C -0.096 4.096 17 C 0.018 3.982 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.259 1.259 26 C -0.126 4.126 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.429 0.571 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.062 0.938 46 H -0.015 1.015 47 H -0.015 1.015 48 H 0.262 0.738 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 26.295 -26.556 37.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.207 4.207 4 O -0.318 6.318 5 C 0.031 3.969 6 C -0.080 4.080 7 C -0.137 4.137 8 C -0.128 4.128 9 C -0.161 4.161 10 C 0.037 3.963 11 N -0.310 5.310 12 C 0.302 3.698 13 O -0.441 6.441 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.020 4.020 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.203 4.203 21 N -0.578 5.578 22 Si 0.793 3.207 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.183 1.183 26 C -0.146 4.146 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.130 0.870 39 H 0.268 0.732 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.003 0.997 47 H 0.003 0.997 48 H 0.071 0.929 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.322 25.812 -26.405 36.949 hybrid contribution -0.360 -0.851 0.853 1.258 sum -1.682 24.961 -25.552 35.760 Atomic orbital electron populations 1.22297 0.95437 1.02497 1.02929 1.22292 0.94173 0.94088 0.87886 1.21883 1.01623 0.94201 1.02962 1.87999 1.86889 1.19851 1.37011 1.21357 1.00506 0.81539 0.93520 1.19619 0.93392 0.98832 0.96176 1.21275 0.95343 0.99376 0.97673 1.21245 1.00307 0.97590 0.93649 1.21253 0.92742 1.01253 1.00824 1.17902 0.89736 0.98269 0.90359 1.43517 1.20158 1.30964 1.36401 1.21474 0.87063 0.78670 0.82618 1.90720 1.27938 1.55517 1.69891 1.21699 0.99259 0.99815 0.95674 1.21260 0.98554 0.96571 0.97113 1.21448 0.98169 0.97478 0.96253 1.19066 0.95025 0.93514 0.94347 1.21770 1.06651 1.13216 1.16444 0.91538 1.26082 0.96979 0.96730 1.00519 1.70132 1.25174 1.20948 1.41526 0.85390 0.78435 0.78744 0.78114 1.19714 1.20967 1.18328 1.20951 1.00961 1.01493 0.91232 0.92438 0.92643 0.90194 0.90922 0.92328 0.89486 0.92699 0.90878 0.91327 0.83817 0.84217 0.87006 0.73196 0.85723 0.85835 0.93730 0.93746 0.91998 0.91913 0.99692 0.99702 0.92886 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.53 71.98 0.69 -0.82 16 2 C 0.07 0.74 3.34 30.59 0.10 0.85 16 3 C -0.15 -1.33 9.56 71.98 0.69 -0.64 16 4 O -0.40 -6.19 9.97 -148.98 -1.49 -7.67 16 5 C 0.11 1.39 5.87 71.23 0.42 1.81 16 6 C -0.08 -1.40 5.51 -19.89 -0.11 -1.51 16 7 C -0.12 -2.12 9.70 22.29 0.22 -1.90 16 8 C -0.11 -2.33 10.04 22.25 0.22 -2.10 16 9 C -0.14 -3.67 8.66 22.39 0.19 -3.47 16 10 C 0.13 3.03 6.28 38.15 0.24 3.26 16 11 N -0.66 -13.38 5.34 -303.50 -1.62 -15.01 16 12 C 0.51 13.80 7.57 87.66 0.66 14.46 16 13 O -0.56 -20.69 13.68 -3.06 -0.04 -20.73 16 14 C -0.13 -2.95 5.70 29.85 0.17 -2.78 16 15 C -0.10 -3.43 4.50 30.60 0.14 -3.29 16 16 C -0.10 -3.87 5.15 30.60 0.16 -3.72 16 17 C 0.02 0.97 4.97 29.85 0.15 1.12 16 18 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 19 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 20 C -0.01 -0.35 5.46 84.66 0.46 0.12 16 21 N -0.94 -59.12 13.29 21.45 0.28 -58.84 16 22 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 C -0.13 -2.34 9.62 22.39 0.22 -2.12 16 27 H 0.06 0.49 7.87 -2.39 -0.02 0.47 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.54 7.79 -2.39 -0.02 0.53 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.07 0.73 8.03 -2.38 -0.02 0.71 16 35 H 0.07 0.73 7.81 -2.39 -0.02 0.71 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.11 3.43 6.43 -2.91 -0.02 3.41 16 39 H 0.43 5.15 8.82 -92.71 -0.82 4.33 16 40 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.04 1.73 8.10 -2.39 -0.02 1.72 16 43 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 46 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 47 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 48 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -77.85 406.42 4.10 -73.75 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.09 Total: 13.65 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 4.85 Total: -32.04 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.34 Total: -73.84 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.53 Total: -28.41 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -77.85 4.10 -73.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.290 kcal (2) G-P(sol) polarization free energy of solvation -77.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds