Wall clock time and date at job start Tue Mar 31 2020 12:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35969 * 116.99726 * 2 1 4 4 C 1.38546 * 120.09029 * 359.97438 * 3 2 1 5 5 C 1.38238 * 120.02107 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.17853 * 359.97438 * 5 4 3 7 7 C 1.38194 * 120.15992 * 0.02562 * 6 5 4 8 8 C 1.38726 * 119.98851 * 359.74431 * 7 6 5 9 9 N 1.40118 * 120.09281 * 180.27684 * 8 7 6 10 10 C 1.34783 * 119.99783 * 270.23359 * 9 8 7 11 11 O 1.21292 * 119.99656 * 5.17484 * 10 9 8 12 12 C 1.50700 * 119.99991 * 185.17677 * 10 9 8 13 13 C 1.53003 * 109.46897 * 184.40481 * 12 10 9 14 14 C 1.52997 * 109.47040 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47273 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47130 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00419 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99865 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00331 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99969 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47127 * 90.00299 * 20 18 16 22 22 H 1.48501 * 109.46865 * 209.99866 * 20 18 16 23 23 H 1.48495 * 109.47104 * 329.99723 * 20 18 16 24 24 C 1.46492 * 120.00488 * 90.23416 * 9 8 7 25 25 C 1.52999 * 109.47062 * 295.17200 * 24 9 8 26 26 C 1.53004 * 109.47343 * 55.17069 * 24 9 8 27 27 H 1.08995 * 109.47403 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46979 * 60.00117 * 1 2 3 29 29 H 1.08996 * 109.47491 * 300.00385 * 1 2 3 30 30 H 1.08002 * 119.99015 * 359.95462 * 4 3 2 31 31 H 1.07995 * 119.91529 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.91826 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.00699 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46712 * 304.40288 * 12 10 9 35 35 H 1.09000 * 109.47162 * 64.40674 * 12 10 9 36 36 H 1.08999 * 109.47268 * 299.99986 * 13 12 10 37 37 H 1.09000 * 109.47056 * 60.00129 * 13 12 10 38 38 H 1.08999 * 109.47315 * 300.00247 * 14 13 12 39 39 H 1.09001 * 109.47038 * 59.99778 * 14 13 12 40 40 H 1.08999 * 109.47003 * 300.00256 * 15 14 13 41 41 H 1.09000 * 109.47088 * 60.00257 * 15 14 13 42 42 H 0.96998 * 120.00779 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.47651 * 175.17435 * 24 9 8 44 44 H 1.09001 * 109.47507 * 65.30847 * 25 24 9 45 45 H 1.09003 * 109.47457 * 185.31326 * 25 24 9 46 46 H 1.09008 * 109.47141 * 305.31182 * 25 24 9 47 47 H 1.09001 * 109.46514 * 55.33374 * 26 24 9 48 48 H 1.09001 * 109.47174 * 175.33340 * 26 24 9 49 49 H 1.08999 * 109.46538 * 295.33290 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9225 3.6056 0.0000 6 6 3.3033 3.6807 0.0016 7 6 4.0614 2.5253 0.0021 8 6 3.4373 1.2864 0.0064 9 7 4.2039 0.1135 0.0129 10 6 4.5785 -0.4530 -1.1513 11 8 4.3334 0.1012 -2.2020 12 6 5.3019 -1.7751 -1.1475 13 6 5.7068 -2.1389 -2.5774 14 6 6.4418 -3.4808 -2.5735 15 6 6.8473 -3.8443 -4.0033 16 6 7.5707 -5.1663 -3.9995 17 1 7.7261 -5.6942 -3.0703 18 6 8.0342 -5.7020 -5.1824 19 7 8.6659 -6.8554 -5.1792 20 14 7.7648 -4.7892 -6.7899 21 1 8.9116 -3.8797 -7.0409 22 1 7.6559 -5.7672 -7.9021 23 1 6.5127 -3.9954 -6.7045 24 6 4.5981 -0.4970 1.2848 25 6 5.5359 0.4501 2.0361 26 6 3.3518 -0.7594 2.1326 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 0.5139 0.8899 30 1 0.2148 2.3196 -0.0017 31 1 1.3340 4.5111 -0.0008 32 1 3.7903 4.6445 0.0016 33 1 5.1397 2.5868 0.0038 34 1 6.1938 -1.6994 -0.5254 35 1 4.6448 -2.5476 -0.7483 36 1 4.8150 -2.2145 -3.1995 37 1 6.3639 -1.3663 -2.9767 38 1 7.3337 -3.4048 -1.9515 39 1 5.7851 -4.2536 -2.1740 40 1 5.9557 -3.9202 -4.6256 41 1 7.5042 -3.0714 -4.4023 42 1 8.9923 -7.2321 -6.0113 43 1 5.1113 -1.4392 1.0921 44 1 4.9941 1.3549 2.3117 45 1 5.9039 -0.0416 2.9366 46 1 6.3779 0.7118 1.3952 47 1 2.6471 -1.3665 1.5644 48 1 3.6359 -1.2883 3.0424 49 1 2.8846 0.1898 2.3951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589813383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:44 Heat of formation + Delta-G solvation = -60.672922 kcal Electronic energy + Delta-G solvation = -27292.888244 eV Core-core repulsion = 23606.026070 eV Total energy + Delta-G solvation = -3686.862174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09847 -39.43550 -37.61980 -36.60688 -35.01281 -32.63675 -32.28346 -30.70051 -30.40999 -29.36950 -27.63425 -27.33460 -25.96020 -23.29573 -22.37540 -22.25691 -21.44862 -20.00663 -19.35195 -18.09897 -17.14431 -16.85112 -16.56375 -16.51309 -15.85320 -15.54448 -15.18823 -14.63255 -14.42847 -14.24574 -14.15855 -13.92266 -13.74843 -13.28901 -12.90458 -12.74786 -12.58025 -12.44409 -12.32965 -12.18889 -12.06197 -11.92093 -11.69825 -11.60042 -11.39789 -11.33362 -11.12572 -11.06008 -10.65581 -10.47864 -9.87550 -9.77502 -9.60265 -9.42524 -9.14140 -9.07644 -8.96047 -8.46354 -8.41490 -5.97680 -3.94863 0.97504 1.16045 2.69983 2.80987 3.01947 3.37816 3.43278 3.44661 3.51422 4.50958 4.53012 4.53639 4.60190 4.69121 4.79092 4.82925 4.85008 4.91725 5.01130 5.12221 5.18994 5.23506 5.27094 5.33899 5.36279 5.38219 5.39966 5.53293 5.58709 5.63488 5.81857 5.90478 5.96033 6.01369 6.07884 6.11657 6.19178 6.20877 6.36450 6.45764 6.66135 6.73423 6.86985 7.03517 7.15150 7.31121 7.42538 7.55272 7.88079 8.27817 8.61590 9.07527 9.65934 11.15852 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018217 B = 0.002647 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.672930 B =10573.580390 C =10820.589518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.136 3.864 4 C -0.208 4.208 5 C -0.079 4.079 6 C -0.153 4.153 7 C -0.071 4.071 8 C 0.118 3.882 9 N -0.568 5.568 10 C 0.520 3.480 11 O -0.525 6.525 12 C -0.136 4.136 13 C -0.106 4.106 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.518 4.518 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.907 5.907 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.264 1.264 24 C 0.130 3.870 25 C -0.165 4.165 26 C -0.159 4.159 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 21.107 19.130 32.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.089 3.911 4 C -0.227 4.227 5 C -0.097 4.097 6 C -0.172 4.172 7 C -0.090 4.090 8 C 0.027 3.973 9 N -0.300 5.300 10 C 0.310 3.690 11 O -0.400 6.400 12 C -0.176 4.176 13 C -0.144 4.144 14 C -0.139 4.139 15 C -0.053 4.053 16 C -0.556 4.556 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 C 0.028 3.972 25 C -0.223 4.223 26 C -0.217 4.217 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.191 21.034 18.426 32.312 hybrid contribution -0.371 0.554 -0.823 1.059 sum -16.562 21.587 17.603 32.406 Atomic orbital electron populations 1.23077 0.78618 1.04090 1.01155 1.86181 1.21034 1.26276 1.88166 1.19294 0.91529 0.84728 0.95570 1.21144 1.00010 0.92078 1.09466 1.20963 0.94663 0.96932 0.97164 1.20953 0.93800 0.98122 1.04304 1.21210 1.00269 0.90788 0.96774 1.16748 0.86555 0.86888 1.07072 1.45587 1.53259 1.24503 1.06645 1.21173 0.78291 0.87052 0.82449 1.90702 1.54618 1.63925 1.30731 1.21811 1.00638 0.93451 1.01673 1.21497 1.01049 0.98819 0.93043 1.21468 0.98644 0.93915 0.99901 1.19575 0.96260 0.96805 0.92643 1.21189 1.35446 1.03722 0.95251 0.91095 1.25039 0.94669 0.94772 0.99127 1.69919 1.39071 1.18354 1.27270 0.86781 0.79396 0.79768 0.83409 1.20324 1.21481 1.18886 1.21301 0.95829 0.97023 0.83042 1.22225 0.99495 1.00041 1.00551 1.22136 0.97661 1.02221 0.99671 0.88147 0.92665 0.92758 0.85260 0.85662 0.85553 0.85287 0.89084 0.88737 0.91723 0.91926 0.92873 0.92829 0.96630 0.97078 0.92845 0.88067 0.92227 0.91183 0.92029 0.91229 0.91580 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.43 8.50 -19.64 -0.17 -3.60 16 3 C 0.14 1.58 5.93 -39.07 -0.23 1.34 16 4 C -0.21 -1.95 9.04 -39.47 -0.36 -2.30 16 5 C -0.08 -0.67 10.04 -39.56 -0.40 -1.07 16 6 C -0.15 -1.38 10.04 -39.58 -0.40 -1.78 16 7 C -0.07 -0.77 9.10 -39.42 -0.36 -1.13 16 8 C 0.12 1.45 3.48 -83.49 -0.29 1.16 16 9 N -0.57 -6.97 2.18 -106.24 -0.23 -7.21 16 10 C 0.52 7.95 7.63 -10.98 -0.08 7.87 16 11 O -0.53 -10.19 15.97 5.55 0.09 -10.10 16 12 C -0.14 -1.89 4.08 -27.88 -0.11 -2.00 16 13 C -0.11 -1.88 4.51 -26.73 -0.12 -2.00 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 15 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 16 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 19 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 20 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 24 C 0.13 1.20 3.13 -67.93 -0.21 0.98 16 25 C -0.16 -1.26 8.90 37.16 0.33 -0.93 16 26 C -0.16 -1.32 8.10 37.16 0.30 -1.02 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.38 7.66 -51.92 -0.40 -0.02 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.09 1.07 7.42 -51.93 -0.39 0.68 16 35 H 0.09 1.18 8.06 -51.93 -0.42 0.76 16 36 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.10 0.86 5.77 -51.93 -0.30 0.56 16 44 H 0.06 0.46 7.47 -51.93 -0.39 0.08 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.07 0.66 7.11 -51.93 -0.37 0.29 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.48 7.36 -51.93 -0.38 0.10 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -35.88 392.02 -8.29 -44.17 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.37 Total: -3.15 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.62 Total: -16.12 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.54 Total: -35.10 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.08 Total: -13.70 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.88 -8.29 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589813383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.506 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds