Wall clock time and date at job start Tue Mar 31 2020 12:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35969 * 116.99726 * 2 1 4 4 C 1.38546 * 120.09029 * 359.97438 * 3 2 1 5 5 C 1.38238 * 120.02107 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.17853 * 359.97438 * 5 4 3 7 7 C 1.38194 * 120.15992 * 0.02562 * 6 5 4 8 8 C 1.38726 * 119.98851 * 359.74431 * 7 6 5 9 9 N 1.40118 * 120.09281 * 180.27684 * 8 7 6 10 10 C 1.34783 * 119.99783 * 270.23359 * 9 8 7 11 11 O 1.21292 * 119.99656 * 5.17484 * 10 9 8 12 12 C 1.50700 * 119.99991 * 185.17677 * 10 9 8 13 13 C 1.53003 * 109.46897 * 184.40481 * 12 10 9 14 14 C 1.52997 * 109.47040 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47273 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47130 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00419 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99865 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00331 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99969 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47127 * 90.00299 * 20 18 16 22 22 H 1.48501 * 109.46865 * 209.99866 * 20 18 16 23 23 H 1.48495 * 109.47104 * 329.99723 * 20 18 16 24 24 C 1.46492 * 120.00488 * 90.23416 * 9 8 7 25 25 C 1.52999 * 109.47062 * 295.17200 * 24 9 8 26 26 C 1.53004 * 109.47343 * 55.17069 * 24 9 8 27 27 H 1.08995 * 109.47403 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46979 * 60.00117 * 1 2 3 29 29 H 1.08996 * 109.47491 * 300.00385 * 1 2 3 30 30 H 1.08002 * 119.99015 * 359.95462 * 4 3 2 31 31 H 1.07995 * 119.91529 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.91826 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.00699 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46712 * 304.40288 * 12 10 9 35 35 H 1.09000 * 109.47162 * 64.40674 * 12 10 9 36 36 H 1.08999 * 109.47268 * 299.99986 * 13 12 10 37 37 H 1.09000 * 109.47056 * 60.00129 * 13 12 10 38 38 H 1.08999 * 109.47315 * 300.00247 * 14 13 12 39 39 H 1.09001 * 109.47038 * 59.99778 * 14 13 12 40 40 H 1.08999 * 109.47003 * 300.00256 * 15 14 13 41 41 H 1.09000 * 109.47088 * 60.00257 * 15 14 13 42 42 H 0.96998 * 120.00779 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.47651 * 175.17435 * 24 9 8 44 44 H 1.09001 * 109.47507 * 65.30847 * 25 24 9 45 45 H 1.09003 * 109.47457 * 185.31326 * 25 24 9 46 46 H 1.09008 * 109.47141 * 305.31182 * 25 24 9 47 47 H 1.09001 * 109.46514 * 55.33374 * 26 24 9 48 48 H 1.09001 * 109.47174 * 175.33340 * 26 24 9 49 49 H 1.08999 * 109.46538 * 295.33290 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9225 3.6056 0.0000 6 6 3.3033 3.6807 0.0016 7 6 4.0614 2.5253 0.0021 8 6 3.4373 1.2864 0.0064 9 7 4.2039 0.1135 0.0129 10 6 4.5785 -0.4530 -1.1513 11 8 4.3334 0.1012 -2.2020 12 6 5.3019 -1.7751 -1.1475 13 6 5.7068 -2.1389 -2.5774 14 6 6.4418 -3.4808 -2.5735 15 6 6.8473 -3.8443 -4.0033 16 6 7.5707 -5.1663 -3.9995 17 1 7.7261 -5.6942 -3.0703 18 6 8.0342 -5.7020 -5.1824 19 7 8.6659 -6.8554 -5.1792 20 14 7.7648 -4.7892 -6.7899 21 1 8.9116 -3.8797 -7.0409 22 1 7.6559 -5.7672 -7.9021 23 1 6.5127 -3.9954 -6.7045 24 6 4.5981 -0.4970 1.2848 25 6 5.5359 0.4501 2.0361 26 6 3.3518 -0.7594 2.1326 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 0.5139 0.8899 30 1 0.2148 2.3196 -0.0017 31 1 1.3340 4.5111 -0.0008 32 1 3.7903 4.6445 0.0016 33 1 5.1397 2.5868 0.0038 34 1 6.1938 -1.6994 -0.5254 35 1 4.6448 -2.5476 -0.7483 36 1 4.8150 -2.2145 -3.1995 37 1 6.3639 -1.3663 -2.9767 38 1 7.3337 -3.4048 -1.9515 39 1 5.7851 -4.2536 -2.1740 40 1 5.9557 -3.9202 -4.6256 41 1 7.5042 -3.0714 -4.4023 42 1 8.9923 -7.2321 -6.0113 43 1 5.1113 -1.4392 1.0921 44 1 4.9941 1.3549 2.3117 45 1 5.9039 -0.0416 2.9366 46 1 6.3779 0.7118 1.3952 47 1 2.6471 -1.3665 1.5644 48 1 3.6359 -1.2883 3.0424 49 1 2.8846 0.1898 2.3951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589813383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:43 Heat of formation + Delta-G solvation = -81.260269 kcal Electronic energy + Delta-G solvation = -27293.780978 eV Core-core repulsion = 23606.026070 eV Total energy + Delta-G solvation = -3687.754908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.95475 -40.35966 -38.41603 -37.48632 -36.68416 -34.62668 -33.12990 -32.13771 -31.22954 -30.45630 -28.29090 -27.99753 -27.55288 -24.56283 -23.27851 -23.08306 -22.62665 -21.74405 -20.27146 -18.86212 -18.84168 -18.13202 -17.65402 -17.39106 -16.71210 -16.53771 -16.35443 -15.89979 -15.60323 -15.42910 -14.97446 -14.95918 -14.69523 -14.65858 -14.16079 -13.80054 -13.71803 -13.65385 -13.51284 -13.18440 -13.03272 -12.87799 -12.82175 -12.62753 -12.37460 -12.30292 -12.14069 -12.03358 -11.98157 -11.81517 -11.74655 -11.45709 -11.35261 -11.26336 -10.84184 -10.75895 -9.89646 -9.89389 -9.15411 -8.29574 -6.32397 0.23629 0.43032 1.34311 1.35847 1.48922 1.57630 1.91824 2.34957 2.35889 2.71220 3.05762 3.61662 3.82678 3.87597 3.96840 3.98215 4.09914 4.16889 4.21783 4.30763 4.34921 4.35625 4.46142 4.51988 4.55689 4.61838 4.68425 4.70561 4.72237 4.77685 4.81681 4.89466 4.95114 5.04112 5.11409 5.19749 5.22242 5.25899 5.30753 5.32494 5.42532 5.49953 5.58630 5.64926 5.66021 5.68507 5.86496 6.29429 6.31548 6.44356 6.75303 7.19976 7.32357 8.87019 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018217 B = 0.002647 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.672930 B =10573.580390 C =10820.589518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.118 3.882 4 C -0.212 4.212 5 C -0.077 4.077 6 C -0.155 4.155 7 C -0.086 4.086 8 C 0.088 3.912 9 N -0.557 5.557 10 C 0.516 3.484 11 O -0.578 6.578 12 C -0.128 4.128 13 C -0.095 4.095 14 C -0.092 4.092 15 C -0.016 4.016 16 C -0.529 4.529 17 H 0.038 0.962 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.254 1.254 24 C 0.121 3.879 25 C -0.158 4.158 26 C -0.150 4.150 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.013 0.987 42 H 0.266 0.734 43 H 0.110 0.890 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.087 0.913 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 23.092 20.138 35.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.240 6.240 3 C 0.071 3.929 4 C -0.231 4.231 5 C -0.095 4.095 6 C -0.174 4.174 7 C -0.105 4.105 8 C -0.003 4.003 9 N -0.287 5.287 10 C 0.307 3.693 11 O -0.457 6.457 12 C -0.167 4.167 13 C -0.133 4.133 14 C -0.129 4.129 15 C -0.054 4.054 16 C -0.567 4.567 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.178 1.178 24 C 0.020 3.980 25 C -0.216 4.216 26 C -0.208 4.208 27 H 0.129 0.871 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.075 0.925 43 H 0.128 0.872 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.358 23.028 19.498 34.810 hybrid contribution -0.050 -0.076 -1.027 1.031 sum -17.409 22.951 18.470 34.220 Atomic orbital electron populations 1.23300 0.76887 1.05209 1.02139 1.86137 1.22968 1.26595 1.88323 1.19494 0.91603 0.85556 0.96281 1.21474 1.01139 0.91762 1.08679 1.21373 0.94734 0.97793 0.95580 1.21284 0.94288 0.98476 1.03343 1.21349 1.00549 0.91166 0.97451 1.17055 0.87235 0.87139 1.08872 1.45576 1.52093 1.24312 1.06714 1.21337 0.78088 0.87230 0.82637 1.90670 1.57041 1.65323 1.32627 1.21723 1.02049 0.93438 0.99533 1.21276 0.99725 0.96903 0.95420 1.21323 0.99307 0.95369 0.96939 1.19567 0.95493 0.94511 0.95804 1.21529 1.35702 1.05323 0.94160 0.94331 1.25968 0.94404 0.95636 1.03168 1.70053 1.40389 1.20112 1.28555 0.85716 0.79944 0.78710 0.78652 1.19142 1.20653 1.17825 1.21605 0.96691 0.97622 0.82117 1.22168 0.98752 0.99757 1.00945 1.22048 0.96820 1.01842 1.00044 0.87086 0.92471 0.90871 0.83135 0.82578 0.83249 0.85381 0.86465 0.86972 0.93337 0.92889 0.92145 0.92491 0.96984 0.96878 0.92496 0.87213 0.92497 0.89144 0.92660 0.92598 0.89469 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.24 8.50 -93.21 -0.79 -8.03 16 3 C 0.12 2.66 5.93 22.60 0.13 2.79 16 4 C -0.21 -3.62 9.04 22.34 0.20 -3.42 16 5 C -0.08 -1.12 10.04 22.28 0.22 -0.90 16 6 C -0.16 -2.55 10.04 22.27 0.22 -2.32 16 7 C -0.09 -1.83 9.10 22.38 0.20 -1.62 16 8 C 0.09 2.12 3.48 38.19 0.13 2.26 16 9 N -0.56 -13.43 2.18 -608.42 -1.33 -14.76 16 10 C 0.52 15.73 7.63 87.66 0.67 16.39 16 11 O -0.58 -22.91 15.97 -3.07 -0.05 -22.96 16 12 C -0.13 -3.41 4.08 29.85 0.12 -3.29 16 13 C -0.10 -3.32 4.51 30.59 0.14 -3.18 16 14 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 15 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 16 C -0.53 -31.59 9.66 25.60 0.25 -31.34 16 17 H 0.04 2.48 7.99 -2.91 -0.02 2.45 16 18 C 0.00 0.30 5.47 84.65 0.46 0.76 16 19 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 20 Si 0.95 46.65 27.47 68.60 1.88 48.54 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 23 H -0.25 -12.04 6.54 99.48 0.65 -11.39 16 24 C 0.12 2.05 3.13 44.99 0.14 2.19 16 25 C -0.16 -2.16 8.90 71.98 0.64 -1.52 16 26 C -0.15 -2.28 8.10 71.98 0.58 -1.69 16 27 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 0.72 7.66 -2.38 -0.02 0.70 16 29 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 30 H 0.15 1.78 6.30 -2.91 -0.02 1.76 16 31 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 32 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.12 2.50 7.42 -2.39 -0.02 2.48 16 35 H 0.11 2.60 8.06 -2.39 -0.02 2.58 16 36 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 41 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 42 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 43 H 0.11 1.64 5.77 -2.38 -0.01 1.63 16 44 H 0.06 0.81 7.47 -2.39 -0.02 0.80 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.05 1.01 7.11 -2.39 -0.02 1.00 16 48 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.05 0.80 7.36 -2.39 -0.02 0.78 16 Total: -1.00 -79.49 392.02 6.38 -73.11 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.85 Total: 12.52 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 5.51 Total: -27.71 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.03 Total: -75.46 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.84 Total: -30.99 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.88 Total: 48.54 kcal Total: -79.49 6.38 -73.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589813383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.151 kcal (2) G-P(sol) polarization free energy of solvation -79.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds