Wall clock time and date at job start Tue Mar 31 2020 12:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00058 * 2 1 4 4 C 1.52998 * 109.47212 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47168 * 300.00353 * 3 2 1 6 6 N 1.46496 * 109.46757 * 299.99789 * 5 3 2 7 7 C 1.34777 * 119.99773 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00218 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00072 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47168 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47666 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47579 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99948 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00084 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00193 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99882 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47419 * 90.00456 * 17 15 13 19 19 H 1.48498 * 109.47186 * 209.99961 * 17 15 13 20 20 H 1.48498 * 109.47489 * 330.00060 * 17 15 13 21 21 C 1.50706 * 109.47264 * 59.99985 * 3 2 1 22 22 C 1.38233 * 120.00109 * 209.72467 * 21 3 2 23 23 C 1.38238 * 119.99749 * 179.78525 * 22 21 3 24 24 C 1.38234 * 120.00078 * 0.44989 * 23 22 21 25 25 C 1.38238 * 120.00032 * 359.80374 * 24 23 22 26 26 C 1.38235 * 120.00123 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47135 * 300.00289 * 1 2 3 28 28 H 1.08999 * 109.47235 * 59.99421 * 1 2 3 29 29 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46785 * 299.99904 * 4 3 2 31 31 H 1.09002 * 109.47171 * 59.99883 * 4 3 2 32 32 H 1.09004 * 109.47223 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47197 * 59.99961 * 5 3 2 34 34 H 1.09001 * 109.47101 * 180.02562 * 5 3 2 35 35 H 0.96997 * 120.00357 * 359.97438 * 6 5 3 36 36 H 1.09001 * 109.47294 * 300.00373 * 9 7 6 37 37 H 1.09001 * 109.46745 * 59.99961 * 9 7 6 38 38 H 1.09001 * 109.47306 * 300.00341 * 10 9 7 39 39 H 1.09001 * 109.46880 * 60.00581 * 10 9 7 40 40 H 1.09001 * 109.47188 * 300.00344 * 11 10 9 41 41 H 1.08999 * 109.47347 * 59.99960 * 11 10 9 42 42 H 1.09001 * 109.47268 * 300.00514 * 12 11 10 43 43 H 1.09004 * 109.46698 * 59.99760 * 12 11 10 44 44 H 0.96998 * 120.00234 * 180.02562 * 16 15 13 45 45 H 1.08004 * 119.99934 * 0.02562 * 22 21 3 46 46 H 1.07999 * 119.99925 * 180.27297 * 23 22 21 47 47 H 1.08002 * 120.00276 * 179.83134 * 24 23 22 48 48 H 1.08000 * 120.00524 * 180.02562 * 25 24 23 49 49 H 1.07999 * 120.00181 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5587 2.0648 -1.2492 6 7 1.9910 1.3378 -2.4454 7 6 1.7032 1.8228 -3.6694 8 8 1.0859 2.8608 -3.7807 9 6 2.1483 1.0753 -4.9000 10 6 1.6967 1.8345 -6.1492 11 6 2.1481 1.0753 -7.3984 12 6 1.6971 1.8347 -8.6477 13 6 2.1423 1.0872 -9.8781 14 1 2.6923 0.1631 -9.7791 15 6 1.8474 1.5831 -11.1304 16 7 2.2354 0.9305 -12.2043 17 14 0.8967 3.1819 -11.3017 18 1 1.8481 4.3212 -11.3472 19 1 0.0999 3.1523 -12.5545 20 1 -0.0138 3.3435 -10.1397 21 6 1.5656 2.0534 1.2305 22 6 1.4490 3.4304 1.1979 23 6 1.0368 4.1159 2.3254 24 6 0.7502 3.4253 3.4880 25 6 0.8719 2.0488 3.5221 26 6 1.2796 1.3627 2.3934 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.8574 0.6436 0.8891 31 1 3.8567 0.6439 -0.8909 32 1 3.9788 2.1804 -0.0002 33 1 0.4721 2.1509 -1.2492 34 1 2.0024 3.0604 -1.2495 35 1 2.4850 0.5078 -2.3564 36 1 3.2349 0.9892 -4.8996 37 1 1.7050 0.0795 -4.9003 38 1 0.6101 1.9201 -6.1493 39 1 2.1398 2.8304 -6.1490 40 1 3.2347 0.9892 -7.3985 41 1 1.7049 0.0795 -7.3984 42 1 0.6105 1.9212 -8.6478 43 1 2.1408 2.8304 -8.6474 44 1 2.0283 1.2796 -13.0852 45 1 1.6762 3.9702 0.2905 46 1 0.9415 5.1914 2.2986 47 1 0.4309 3.9612 4.3697 48 1 0.6476 1.5091 4.4303 49 1 1.3750 0.2873 2.4201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590774036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:02 Heat of formation + Delta-G solvation = -98.365810 kcal Electronic energy + Delta-G solvation = -26221.412820 eV Core-core repulsion = 22532.916160 eV Total energy + Delta-G solvation = -3688.496660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59459 -40.45198 -38.75020 -36.71772 -35.79671 -34.60029 -33.71774 -31.94837 -31.79409 -30.57444 -28.65964 -27.32827 -26.85862 -24.35437 -23.72971 -23.10608 -21.74169 -21.38607 -20.95473 -18.85458 -18.51443 -18.14929 -17.18493 -17.10455 -16.75644 -16.45320 -16.31322 -16.02040 -15.69015 -15.42913 -15.32600 -14.90705 -14.62928 -14.56526 -14.36420 -13.98939 -13.72805 -13.57744 -13.51796 -13.40104 -13.32428 -12.99789 -12.84909 -12.73577 -12.34572 -12.33095 -12.06998 -11.97743 -11.75448 -11.63134 -11.51513 -11.34220 -11.26128 -10.92751 -10.75780 -10.66459 -10.13952 -9.85504 -9.72568 -8.29441 -6.32433 0.33562 0.45131 1.34709 1.36207 1.49116 1.64324 2.10451 2.36021 2.69842 2.82590 3.05830 3.50045 3.53280 3.84109 3.87924 4.04326 4.05417 4.11560 4.16196 4.25956 4.37829 4.44487 4.49741 4.56340 4.62117 4.64122 4.66036 4.70179 4.73498 4.77974 4.80958 4.87197 4.89433 5.03084 5.11313 5.15317 5.19645 5.21111 5.26892 5.37841 5.49890 5.55947 5.59482 5.61218 5.66277 5.69058 6.04961 6.11200 6.29899 6.52361 6.75482 7.24613 7.32290 8.87089 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.001941 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.640468 B =14422.649727 C =14872.055061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.373 6.373 3 C 0.154 3.846 4 C -0.135 4.135 5 C 0.098 3.902 6 N -0.713 5.713 7 C 0.513 3.487 8 O -0.586 6.586 9 C -0.131 4.131 10 C -0.097 4.097 11 C -0.094 4.094 12 C -0.017 4.017 13 C -0.530 4.530 14 H 0.037 0.963 15 C 0.003 3.997 16 N -0.950 5.950 17 Si 0.948 3.052 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.253 1.253 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.107 4.107 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.416 0.584 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.266 0.734 45 H 0.124 0.876 46 H 0.137 0.863 47 H 0.142 0.858 48 H 0.142 0.858 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 1.107 38.561 38.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.292 6.292 3 C 0.114 3.886 4 C -0.192 4.192 5 C -0.026 4.026 6 N -0.366 5.366 7 C 0.302 3.698 8 O -0.466 6.466 9 C -0.171 4.171 10 C -0.135 4.135 11 C -0.132 4.132 12 C -0.055 4.055 13 C -0.568 4.568 14 H 0.055 0.945 15 C -0.193 4.193 16 N -0.591 5.591 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.177 1.177 21 C -0.120 4.120 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.125 4.125 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.254 0.746 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.075 0.925 45 H 0.142 0.858 46 H 0.154 0.846 47 H 0.160 0.840 48 H 0.160 0.840 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.426 1.662 38.316 38.379 hybrid contribution -0.424 0.486 -0.743 0.984 sum -1.850 2.148 37.573 37.680 Atomic orbital electron populations 1.22928 0.80513 1.03746 1.00332 1.87963 1.20515 1.26075 1.94625 1.20481 0.95552 0.82804 0.89760 1.21806 0.89780 1.03635 1.03993 1.21939 0.99864 0.96316 0.84490 1.45820 1.58490 1.27875 1.04426 1.21159 0.78143 0.84935 0.85598 1.90686 1.42348 1.26045 1.87513 1.21681 1.04566 1.00565 0.90270 1.21274 1.00597 0.98724 0.92896 1.21342 1.00441 0.98618 0.92775 1.19580 0.96092 0.95897 0.93905 1.21547 1.35286 1.08663 0.91349 0.94467 1.25999 0.96685 1.01120 0.95545 1.70060 1.48884 1.41594 0.98558 0.85690 0.79512 0.79588 0.78068 1.19179 1.20719 1.17663 1.20220 1.01857 0.94213 0.95740 1.21275 0.99980 0.93792 0.99307 1.21423 0.99127 1.00984 0.93042 1.21521 0.99096 0.94731 0.98626 1.21456 0.99380 0.94751 0.98777 1.21108 0.98612 1.00641 0.92155 0.93183 0.94702 0.87942 0.90733 0.90489 0.90226 0.92368 0.90627 0.74583 0.86444 0.86779 0.93130 0.92866 0.92364 0.92503 0.96843 0.96867 0.92526 0.85772 0.84552 0.84042 0.84005 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.04 113.37 1.14 1.43 16 2 O -0.37 -5.60 9.28 -148.98 -1.38 -6.98 16 3 C 0.15 2.18 0.62 -11.54 -0.01 2.18 16 4 C -0.14 -1.56 8.65 71.98 0.62 -0.93 16 5 C 0.10 1.77 3.53 86.38 0.30 2.07 16 6 N -0.71 -13.04 5.15 -463.05 -2.38 -15.43 16 7 C 0.51 13.07 7.83 87.66 0.69 13.76 16 8 O -0.59 -20.34 15.98 -3.03 -0.05 -20.39 16 9 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 10 C -0.10 -3.17 4.50 30.59 0.14 -3.03 16 11 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 12 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 13 C -0.53 -31.48 9.66 25.60 0.25 -31.24 16 14 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 15 C 0.00 0.19 5.47 84.66 0.46 0.65 16 16 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 17 Si 0.95 46.25 27.47 68.60 1.88 48.13 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.25 -11.76 6.54 99.48 0.65 -11.11 16 21 C -0.12 -1.72 4.02 -19.86 -0.08 -1.80 16 22 C -0.13 -1.84 9.14 22.27 0.20 -1.64 16 23 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 24 C -0.12 -1.33 10.05 22.27 0.22 -1.10 16 25 C -0.13 -1.38 10.05 22.27 0.22 -1.16 16 26 C -0.11 -1.39 7.77 22.27 0.17 -1.22 16 27 H 0.05 0.67 6.04 -2.39 -0.01 0.65 16 28 H 0.03 0.57 6.42 -2.39 -0.02 0.55 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.78 6.86 -2.39 -0.02 0.76 16 32 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.06 1.24 6.54 -2.39 -0.02 1.22 16 34 H 0.08 1.43 6.51 -2.39 -0.02 1.42 16 35 H 0.42 5.60 7.19 -92.71 -0.67 4.94 16 36 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 1.77 8.10 -2.39 -0.02 1.76 16 39 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 43 H 0.01 0.63 7.57 -2.38 -0.02 0.61 16 44 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.12 1.79 6.17 -2.91 -0.02 1.77 16 46 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 48 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 49 H 0.13 1.56 7.39 -2.91 -0.02 1.54 16 Total: -1.00 -75.26 390.42 3.59 -71.68 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.21 Total: 14.00 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 5.01 Total: -30.53 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.08 Total: -75.91 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.43 Total: -27.37 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.13 kcal Total: -75.26 3.59 -71.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590774036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.689 kcal (2) G-P(sol) polarization free energy of solvation -75.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds