Wall clock time and date at job start Tue Mar 31 2020 14:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55337 * 2 1 4 4 C 1.52999 * 117.50264 * 145.70363 * 2 1 3 5 5 C 1.52994 * 117.50137 * 214.32853 * 2 1 3 6 6 H 1.09005 * 117.50375 * 145.02002 * 5 2 1 7 7 C 1.50696 * 117.49944 * 0.02562 * 5 2 1 8 8 C 1.34511 * 125.79225 * 119.71599 * 7 5 2 9 9 C 1.41382 * 106.84834 * 179.89195 * 8 7 5 10 10 C 1.34524 * 106.83427 * 0.37028 * 9 8 7 11 11 C 1.50694 * 125.78831 * 179.78631 * 10 9 8 12 12 C 1.53010 * 109.46788 * 90.00645 * 11 10 9 13 13 C 1.50703 * 109.46946 * 179.97438 * 12 11 10 14 14 O 1.21275 * 120.00186 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99613 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99852 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47143 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46995 * 299.99646 * 17 16 15 19 19 C 1.52998 * 109.47353 * 59.99687 * 17 16 15 20 20 C 1.50700 * 109.47233 * 179.97438 * 17 16 15 21 21 H 1.07998 * 119.99790 * 359.97438 * 20 17 16 22 22 C 1.37881 * 120.00290 * 179.97438 * 20 17 16 23 23 N 1.31518 * 119.99752 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 120.00194 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.46868 * 60.00196 * 24 22 20 26 26 H 1.48499 * 109.46893 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47076 * 300.00494 * 24 22 20 28 28 O 1.34301 * 108.42069 * 359.77301 * 10 9 8 29 29 H 1.09002 * 109.47153 * 205.67152 * 1 2 3 30 30 H 1.09001 * 109.46832 * 85.67343 * 1 2 3 31 31 H 1.09004 * 109.47261 * 325.67324 * 1 2 3 32 32 H 1.08994 * 117.50345 * 214.98309 * 4 2 1 33 33 H 1.09008 * 117.49719 * 0.02562 * 4 2 1 34 34 H 1.08004 * 126.57806 * 0.02670 * 8 7 5 35 35 H 1.07998 * 126.58678 * 180.11934 * 9 8 7 36 36 H 1.08996 * 109.47460 * 210.00285 * 11 10 9 37 37 H 1.09004 * 109.47323 * 330.01131 * 11 10 9 38 38 H 1.09001 * 109.46655 * 299.99576 * 12 11 10 39 39 H 1.08994 * 109.46891 * 60.00114 * 12 11 10 40 40 H 0.96993 * 119.99701 * 359.97438 * 15 13 12 41 41 H 1.09004 * 109.47140 * 300.00054 * 16 15 13 42 42 H 1.09005 * 109.47404 * 59.99821 * 16 15 13 43 43 H 1.09000 * 109.47078 * 59.99829 * 18 17 16 44 44 H 1.09006 * 109.46900 * 180.02562 * 18 17 16 45 45 H 1.08996 * 109.46986 * 300.00094 * 18 17 16 46 46 H 1.09004 * 109.46811 * 60.00158 * 19 17 16 47 47 H 1.08999 * 109.47299 * 180.02562 * 19 17 16 48 48 H 1.09000 * 109.46856 * 300.00253 * 19 17 16 49 49 H 0.96993 * 120.00073 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 3.1716 -0.8747 -1.2685 7 6 1.3721 -2.1398 -1.4619 8 6 1.3643 -2.3935 -2.7829 9 6 0.4126 -3.4166 -2.9980 10 6 -0.1103 -3.7213 -1.7966 11 6 -1.1720 -4.7581 -1.5348 12 6 -0.5083 -6.1080 -1.2542 13 6 -1.5700 -7.1448 -0.9918 14 8 -2.7420 -6.8349 -1.0263 15 7 -1.2170 -8.4168 -0.7198 16 6 -2.2491 -9.4249 -0.4653 17 6 -1.5855 -10.7745 -0.1846 18 6 -0.7506 -11.1941 -1.3962 19 6 -0.6788 -10.6519 1.0417 20 6 -2.6471 -11.8114 0.0779 21 1 -3.6907 -11.5352 0.0479 22 6 -2.2861 -13.1127 0.3562 23 7 -1.0151 -13.4489 0.3932 24 14 -3.6020 -14.3977 0.6823 25 1 -4.4832 -14.5166 -0.5071 26 1 -2.9579 -15.7077 0.9546 27 1 -4.4111 -13.9903 1.8590 28 8 0.4747 -2.9448 -0.8700 29 1 -0.3633 -0.9262 0.4452 30 1 -0.3633 0.0775 -1.0248 31 1 -0.3634 0.8487 0.5795 32 1 3.1715 -0.8755 1.2680 33 1 1.6113 -1.8591 1.2675 34 1 1.9705 -1.9100 -3.5347 35 1 0.1521 -3.8645 -3.9456 36 1 -1.7667 -4.4594 -0.6717 37 1 -1.8178 -4.8455 -2.4086 38 1 0.0864 -6.4068 -2.1174 39 1 0.1375 -6.0206 -0.3806 40 1 -0.2797 -8.6649 -0.6933 41 1 -2.8436 -9.1262 0.3981 42 1 -2.8953 -9.5120 -1.3388 43 1 0.0173 -10.4441 -1.5856 44 1 -0.2781 -12.1559 -1.1963 45 1 -1.3965 -11.2815 -2.2698 46 1 -1.2737 -10.3530 1.9049 47 1 -0.2057 -11.6133 1.2414 48 1 0.0890 -9.9018 0.8523 49 1 -0.7611 -14.3641 0.5894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:20 Heat of formation + Delta-G solvation = -21.857660 kcal Electronic energy + Delta-G solvation = -26202.579398 eV Core-core repulsion = 22517.400380 eV Total energy + Delta-G solvation = -3685.179018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -42.78291 -39.35770 -38.09990 -36.45011 -33.98605 -33.28146 -32.92306 -30.91152 -29.51411 -28.45638 -26.01135 -25.73608 -25.28112 -24.01564 -22.26461 -22.05986 -20.89874 -19.99213 -19.86650 -18.78037 -17.24697 -16.61676 -16.20866 -15.86817 -15.72063 -15.48007 -15.04362 -14.72506 -14.43858 -13.80967 -13.52249 -13.35799 -13.23423 -13.00465 -12.93520 -12.78653 -12.60632 -12.36281 -12.18998 -12.08142 -12.00891 -11.81021 -11.38623 -11.19280 -11.11680 -10.91050 -10.84899 -10.73699 -10.40977 -10.39252 -10.21278 -9.95088 -9.64339 -9.59395 -9.25637 -8.80393 -8.46038 -8.31767 -8.30420 -6.02580 -4.12743 1.50544 2.42440 2.67747 3.03329 3.29719 3.34044 3.37414 3.47391 3.75037 4.14432 4.31127 4.39570 4.48689 4.65970 4.87232 4.89625 4.94262 4.97216 5.11212 5.23988 5.27650 5.31556 5.41790 5.47351 5.54954 5.57417 5.64796 5.69655 5.75590 5.85929 5.94387 5.96865 6.08624 6.22862 6.32106 6.40911 6.50062 6.77099 6.81588 6.92482 7.00878 7.02551 7.07566 7.34463 7.54751 7.68683 8.00126 8.04042 8.14472 8.37771 8.68266 8.87791 9.52973 10.98778 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.002010 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.237557 B =13928.690029 C =14040.389725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.140 4.140 3 H 0.112 0.888 4 C -0.167 4.167 5 C -0.082 4.082 6 H 0.132 0.868 7 C 0.018 3.982 8 C -0.204 4.204 9 C -0.208 4.208 10 C -0.004 4.004 11 C -0.022 4.022 12 C -0.139 4.139 13 C 0.505 3.495 14 O -0.555 6.555 15 N -0.716 5.716 16 C 0.131 3.869 17 C 0.055 3.945 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.506 4.506 21 H 0.057 0.943 22 C 0.066 3.934 23 N -0.886 5.886 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 O -0.170 6.170 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.398 0.602 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.006 0.994 44 H 0.085 0.915 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.006 0.994 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 23.651 -3.336 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 H 0.130 0.870 4 C -0.204 4.204 5 C -0.100 4.100 6 H 0.150 0.850 7 C -0.032 4.032 8 C -0.223 4.223 9 C -0.228 4.228 10 C -0.054 4.054 11 C -0.060 4.060 12 C -0.179 4.179 13 C 0.290 3.710 14 O -0.434 6.434 15 N -0.367 5.367 16 C 0.009 3.991 17 C 0.055 3.945 18 C -0.189 4.189 19 C -0.189 4.189 20 C -0.545 4.545 21 H 0.075 0.925 22 C -0.136 4.136 23 N -0.525 5.525 24 Si 0.722 3.278 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 O -0.067 6.067 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.234 0.766 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.025 0.975 44 H 0.104 0.896 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.104 0.896 48 H 0.025 0.975 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.119 23.661 -3.008 25.195 hybrid contribution -0.029 -0.905 -0.109 0.913 sum 8.090 22.755 -3.117 24.351 Atomic orbital electron populations 1.21383 0.92343 1.02399 1.02132 1.22509 0.96054 0.94138 1.03097 0.87018 1.23206 1.03060 1.01562 0.92550 1.20591 0.98724 0.96487 0.94214 0.84993 1.21207 0.94645 0.95825 0.91555 1.21443 1.03643 1.01950 0.95274 1.21576 1.01049 1.01631 0.98498 1.22487 0.99321 0.96517 0.87104 1.19850 0.92629 0.88419 1.05092 1.21672 0.98376 0.93556 1.04282 1.20446 0.89836 0.83534 0.77162 1.90672 1.19483 1.80725 1.52499 1.46327 1.11485 1.08832 1.70009 1.21720 0.89565 0.88143 0.99706 1.18358 0.94099 0.89360 0.92715 1.21832 0.97792 1.01857 0.97378 1.21833 0.97729 1.01252 0.98057 1.20944 0.92357 0.93136 1.48027 0.92503 1.24889 0.95378 0.98306 0.94997 1.69792 1.14975 1.18562 1.49138 0.86625 0.81793 0.80553 0.78833 1.20280 1.21336 1.20286 1.83939 1.43644 1.41400 1.37715 0.91955 0.92161 0.91960 0.87992 0.87958 0.83724 0.83441 0.89343 0.87985 0.88665 0.88847 0.76649 0.92735 0.92713 0.97480 0.89590 0.95449 0.95447 0.89591 0.97493 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.15 37.16 0.34 -0.66 16 2 C -0.14 -0.98 6.41 -90.62 -0.58 -1.56 16 3 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.17 -1.22 9.81 -26.73 -0.26 -1.48 16 5 C -0.08 -0.65 6.24 -91.78 -0.57 -1.22 16 6 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 7 C 0.02 0.18 5.89 -35.63 -0.21 -0.03 16 8 C -0.20 -2.08 10.81 -39.70 -0.43 -2.51 16 9 C -0.21 -2.26 10.81 -39.70 -0.43 -2.69 16 10 C 0.00 -0.05 6.57 -35.62 -0.23 -0.28 16 11 C -0.02 -0.26 5.04 -27.88 -0.14 -0.40 16 12 C -0.14 -1.67 5.68 -27.88 -0.16 -1.83 16 13 C 0.50 8.31 7.83 -10.98 -0.09 8.23 16 14 O -0.55 -11.09 15.98 5.56 0.09 -11.00 16 15 N -0.72 -12.43 4.96 -60.30 -0.30 -12.72 16 16 C 0.13 2.76 4.50 -4.05 -0.02 2.74 16 17 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 18 C -0.13 -2.93 8.08 37.16 0.30 -2.62 16 19 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 20 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 23 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 24 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 O -0.17 -2.05 9.63 5.70 0.05 -1.99 16 29 H 0.06 0.58 7.27 -51.93 -0.38 0.20 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.88 7.87 -51.92 -0.41 0.47 16 34 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.40 6.23 6.16 -40.82 -0.25 5.98 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 44 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 48 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 49 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -29.12 394.45 -9.60 -38.72 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.26 Total: 6.01 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.63 Total: -17.61 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.22 Total: -35.75 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.14 Total: -12.99 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.12 -9.60 -38.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.862 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds