Wall clock time and date at job start Tue Mar 31 2020 14:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55337 * 2 1 4 4 C 1.52999 * 117.50264 * 145.70363 * 2 1 3 5 5 C 1.52994 * 117.50137 * 214.32853 * 2 1 3 6 6 H 1.09005 * 117.50375 * 145.02002 * 5 2 1 7 7 C 1.50696 * 117.49944 * 0.02562 * 5 2 1 8 8 C 1.34511 * 125.79225 * 119.71599 * 7 5 2 9 9 C 1.41382 * 106.84834 * 179.89195 * 8 7 5 10 10 C 1.34524 * 106.83427 * 0.37028 * 9 8 7 11 11 C 1.50694 * 125.78831 * 179.78631 * 10 9 8 12 12 C 1.53010 * 109.46788 * 90.00645 * 11 10 9 13 13 C 1.50703 * 109.46946 * 179.97438 * 12 11 10 14 14 O 1.21275 * 120.00186 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99613 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99852 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47143 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46995 * 299.99646 * 17 16 15 19 19 C 1.52998 * 109.47353 * 59.99687 * 17 16 15 20 20 C 1.50700 * 109.47233 * 179.97438 * 17 16 15 21 21 H 1.07998 * 119.99790 * 359.97438 * 20 17 16 22 22 C 1.37881 * 120.00290 * 179.97438 * 20 17 16 23 23 N 1.31518 * 119.99752 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 120.00194 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.46868 * 60.00196 * 24 22 20 26 26 H 1.48499 * 109.46893 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47076 * 300.00494 * 24 22 20 28 28 O 1.34301 * 108.42069 * 359.77301 * 10 9 8 29 29 H 1.09002 * 109.47153 * 205.67152 * 1 2 3 30 30 H 1.09001 * 109.46832 * 85.67343 * 1 2 3 31 31 H 1.09004 * 109.47261 * 325.67324 * 1 2 3 32 32 H 1.08994 * 117.50345 * 214.98309 * 4 2 1 33 33 H 1.09008 * 117.49719 * 0.02562 * 4 2 1 34 34 H 1.08004 * 126.57806 * 0.02670 * 8 7 5 35 35 H 1.07998 * 126.58678 * 180.11934 * 9 8 7 36 36 H 1.08996 * 109.47460 * 210.00285 * 11 10 9 37 37 H 1.09004 * 109.47323 * 330.01131 * 11 10 9 38 38 H 1.09001 * 109.46655 * 299.99576 * 12 11 10 39 39 H 1.08994 * 109.46891 * 60.00114 * 12 11 10 40 40 H 0.96993 * 119.99701 * 359.97438 * 15 13 12 41 41 H 1.09004 * 109.47140 * 300.00054 * 16 15 13 42 42 H 1.09005 * 109.47404 * 59.99821 * 16 15 13 43 43 H 1.09000 * 109.47078 * 59.99829 * 18 17 16 44 44 H 1.09006 * 109.46900 * 180.02562 * 18 17 16 45 45 H 1.08996 * 109.46986 * 300.00094 * 18 17 16 46 46 H 1.09004 * 109.46811 * 60.00158 * 19 17 16 47 47 H 1.08999 * 109.47299 * 180.02562 * 19 17 16 48 48 H 1.09000 * 109.46856 * 300.00253 * 19 17 16 49 49 H 0.96993 * 120.00073 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 3.1716 -0.8747 -1.2685 7 6 1.3721 -2.1398 -1.4619 8 6 1.3643 -2.3935 -2.7829 9 6 0.4126 -3.4166 -2.9980 10 6 -0.1103 -3.7213 -1.7966 11 6 -1.1720 -4.7581 -1.5348 12 6 -0.5083 -6.1080 -1.2542 13 6 -1.5700 -7.1448 -0.9918 14 8 -2.7420 -6.8349 -1.0263 15 7 -1.2170 -8.4168 -0.7198 16 6 -2.2491 -9.4249 -0.4653 17 6 -1.5855 -10.7745 -0.1846 18 6 -0.7506 -11.1941 -1.3962 19 6 -0.6788 -10.6519 1.0417 20 6 -2.6471 -11.8114 0.0779 21 1 -3.6907 -11.5352 0.0479 22 6 -2.2861 -13.1127 0.3562 23 7 -1.0151 -13.4489 0.3932 24 14 -3.6020 -14.3977 0.6823 25 1 -4.4832 -14.5166 -0.5071 26 1 -2.9579 -15.7077 0.9546 27 1 -4.4111 -13.9903 1.8590 28 8 0.4747 -2.9448 -0.8700 29 1 -0.3633 -0.9262 0.4452 30 1 -0.3633 0.0775 -1.0248 31 1 -0.3634 0.8487 0.5795 32 1 3.1715 -0.8755 1.2680 33 1 1.6113 -1.8591 1.2675 34 1 1.9705 -1.9100 -3.5347 35 1 0.1521 -3.8645 -3.9456 36 1 -1.7667 -4.4594 -0.6717 37 1 -1.8178 -4.8455 -2.4086 38 1 0.0864 -6.4068 -2.1174 39 1 0.1375 -6.0206 -0.3806 40 1 -0.2797 -8.6649 -0.6933 41 1 -2.8436 -9.1262 0.3981 42 1 -2.8953 -9.5120 -1.3388 43 1 0.0173 -10.4441 -1.5856 44 1 -0.2781 -12.1559 -1.1963 45 1 -1.3965 -11.2815 -2.2698 46 1 -1.2737 -10.3530 1.9049 47 1 -0.2057 -11.6133 1.2414 48 1 0.0890 -9.9018 0.8523 49 1 -0.7611 -14.3641 0.5894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:13 Heat of formation + Delta-G solvation = -35.585768 kcal Electronic energy + Delta-G solvation = -26203.174693 eV Core-core repulsion = 22517.400380 eV Total energy + Delta-G solvation = -3685.774313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 5.97 seconds Orbital eigenvalues (eV) -43.58624 -40.78035 -38.68651 -38.17286 -35.00695 -34.95983 -33.75330 -32.71527 -30.32679 -29.21743 -27.56029 -27.53357 -27.02762 -25.25702 -23.01114 -22.82669 -21.64286 -21.26887 -20.63192 -20.57825 -18.52929 -17.71896 -17.33950 -17.06111 -16.80680 -16.69563 -16.40273 -16.27434 -15.48297 -15.17033 -14.79864 -14.60992 -14.16520 -14.14289 -14.02194 -13.95485 -13.72145 -13.42947 -13.27632 -13.18911 -13.08442 -12.95663 -12.73667 -12.65919 -12.62447 -12.37774 -12.24811 -12.13511 -12.05985 -11.51248 -11.48050 -11.27870 -10.98032 -10.89186 -10.72241 -10.65839 -10.39505 -9.92242 -9.09243 -8.02163 -6.17874 0.70398 1.43838 1.44982 1.51539 1.63758 1.70287 1.89704 2.37153 2.52513 2.90022 3.21180 3.47947 3.69510 3.77670 3.89936 3.95159 4.06700 4.18203 4.20321 4.37090 4.42782 4.45471 4.52096 4.59422 4.71781 4.72699 4.79311 4.84507 4.87505 4.91757 4.98207 5.01003 5.06253 5.06600 5.11959 5.13098 5.17025 5.19997 5.23048 5.37968 5.40130 5.60708 5.65132 5.67195 5.67500 6.15552 6.22126 6.27257 6.43691 6.68335 6.86261 7.33391 7.49615 8.96426 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.002010 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.237557 B =13928.690029 C =14040.389725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 H 0.136 0.864 4 C -0.168 4.168 5 C -0.091 4.091 6 H 0.155 0.845 7 C 0.012 3.988 8 C -0.214 4.214 9 C -0.208 4.208 10 C -0.023 4.023 11 C -0.016 4.016 12 C -0.124 4.124 13 C 0.505 3.495 14 O -0.592 6.592 15 N -0.711 5.711 16 C 0.147 3.853 17 C 0.050 3.950 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.529 4.529 21 H 0.044 0.956 22 C 0.027 3.973 23 N -0.899 5.899 24 Si 0.945 3.055 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.278 1.278 28 O -0.186 6.186 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.410 0.590 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.062 0.938 48 H 0.038 0.962 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.720 25.257 -3.853 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 H 0.154 0.846 4 C -0.205 4.205 5 C -0.109 4.109 6 H 0.173 0.827 7 C -0.038 4.038 8 C -0.233 4.233 9 C -0.227 4.227 10 C -0.073 4.073 11 C -0.054 4.054 12 C -0.164 4.164 13 C 0.293 3.707 14 O -0.473 6.473 15 N -0.363 5.363 16 C 0.023 3.977 17 C 0.049 3.951 18 C -0.179 4.179 19 C -0.179 4.179 20 C -0.567 4.567 21 H 0.062 0.938 22 C -0.173 4.173 23 N -0.537 5.537 24 Si 0.772 3.228 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.203 1.203 28 O -0.084 6.084 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.247 0.753 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.081 0.919 48 H 0.057 0.943 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.946 25.273 -3.528 27.387 hybrid contribution -0.601 -1.340 0.053 1.469 sum 9.345 23.933 -3.475 25.927 Atomic orbital electron populations 1.21376 0.93444 1.01930 1.01594 1.22610 0.95266 0.95038 1.02381 0.84624 1.23237 1.03705 1.01267 0.92299 1.20854 0.99299 0.96215 0.94519 0.82706 1.21795 0.94193 0.95715 0.92113 1.21758 1.03860 1.01977 0.95719 1.21856 1.00691 1.01491 0.98700 1.22416 1.00050 0.97270 0.87531 1.19717 0.92660 0.88513 1.04470 1.21630 0.96953 0.91871 1.05938 1.21186 0.90258 0.83598 0.75624 1.90661 1.21554 1.81236 1.53888 1.46163 1.11200 1.08638 1.70275 1.21256 0.89952 0.88257 0.98233 1.18366 0.93762 0.89610 0.93339 1.21672 0.98095 1.01559 0.96543 1.21679 0.98027 1.00869 0.97341 1.21247 0.92644 0.94415 1.48418 0.93782 1.25467 0.97015 0.99772 0.95048 1.69898 1.15863 1.18715 1.49265 0.85823 0.79820 0.78727 0.78469 1.20244 1.20829 1.20318 1.83930 1.44244 1.41898 1.38332 0.93952 0.93016 0.90619 0.85931 0.89847 0.81679 0.82063 0.90743 0.88074 0.86186 0.87304 0.75327 0.94494 0.94291 0.94266 0.91951 0.96290 0.96400 0.91919 0.94337 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.15 71.98 0.66 -1.24 16 2 C -0.14 -1.62 6.41 -10.80 -0.07 -1.69 16 3 H 0.14 0.99 8.14 -2.38 -0.02 0.98 16 4 C -0.17 -2.17 9.81 30.59 0.30 -1.87 16 5 C -0.09 -1.24 6.24 -11.54 -0.07 -1.31 16 6 H 0.16 1.34 8.14 -2.38 -0.02 1.33 16 7 C 0.01 0.23 5.89 24.83 0.15 0.37 16 8 C -0.21 -3.96 10.81 22.19 0.24 -3.72 16 9 C -0.21 -4.17 10.81 22.19 0.24 -3.93 16 10 C -0.02 -0.52 6.57 24.83 0.16 -0.35 16 11 C -0.02 -0.36 5.04 29.85 0.15 -0.21 16 12 C -0.12 -2.75 5.68 29.85 0.17 -2.58 16 13 C 0.51 16.14 7.83 87.66 0.69 16.82 16 14 O -0.59 -23.74 15.98 -3.02 -0.05 -23.79 16 15 N -0.71 -23.76 4.96 -463.07 -2.30 -26.06 16 16 C 0.15 6.21 4.50 86.38 0.39 6.60 16 17 C 0.05 2.29 0.50 -52.93 -0.03 2.27 16 18 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 19 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 20 C -0.53 -27.97 8.01 25.60 0.21 -27.76 16 21 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 22 C 0.03 1.41 5.15 84.66 0.44 1.85 16 23 N -0.90 -47.90 9.35 21.45 0.20 -47.70 16 24 Si 0.94 42.68 29.54 68.60 2.03 44.70 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 O -0.19 -4.38 9.63 -2.51 -0.02 -4.40 16 29 H 0.04 0.80 7.27 -2.39 -0.02 0.78 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.40 7.87 -2.38 -0.02 1.38 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 37 H 0.10 2.30 8.10 -2.39 -0.02 2.28 16 38 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.41 11.78 6.16 -92.71 -0.57 11.21 16 41 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 44 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 48 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 49 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -63.31 394.45 5.00 -58.31 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.36 Total: 25.22 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.78 Total: -26.28 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -2.10 Total: -73.76 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.07 Total: -28.19 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -63.31 5.00 -58.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.727 kcal (2) G-P(sol) polarization free energy of solvation -63.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.97 seconds