Wall clock time and date at job start Tue Mar 31 2020 14:23:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 115.55947 * 2 1
4 4 C 1.53000 * 117.49751 * 214.30865 * 2 1 3
5 5 C 1.53001 * 117.49752 * 145.68584 * 2 1 3
6 6 H 1.08995 * 117.52119 * 0.02562 * 5 2 1
7 7 C 1.50698 * 117.49779 * 214.97719 * 5 2 1
8 8 C 1.34516 * 125.78938 * 119.98539 * 7 5 2
9 9 C 1.41382 * 106.84204 * 180.02562 * 8 7 5
10 10 C 1.34508 * 106.84224 * 0.02562 * 9 8 7
11 11 C 1.50703 * 125.79113 * 180.02562 * 10 9 8
12 12 C 1.52999 * 109.47140 * 90.00276 * 11 10 9
13 13 C 1.50703 * 109.47140 * 179.97438 * 12 11 10
14 14 O 1.21278 * 119.99818 * 359.97438 * 13 12 11
15 15 N 1.34777 * 119.99991 * 179.97438 * 13 12 11
16 16 C 1.46496 * 120.00012 * 180.02562 * 15 13 12
17 17 C 1.52999 * 109.47487 * 180.02562 * 16 15 13
18 18 C 1.53006 * 109.46623 * 299.99762 * 17 16 15
19 19 C 1.52997 * 109.47269 * 59.99598 * 17 16 15
20 20 C 1.50698 * 109.47150 * 179.97438 * 17 16 15
21 21 H 1.07993 * 120.00472 * 359.97438 * 20 17 16
22 22 C 1.37882 * 119.99554 * 179.97438 * 20 17 16
23 23 N 1.31515 * 120.00420 * 359.97438 * 22 20 17
24 24 Si 1.86798 * 119.99716 * 179.97438 * 22 20 17
25 25 H 1.48500 * 109.47454 * 59.99745 * 24 22 20
26 26 H 1.48503 * 109.46926 * 179.97438 * 24 22 20
27 27 H 1.48496 * 109.47302 * 299.99567 * 24 22 20
28 28 O 1.34305 * 125.79158 * 300.33888 * 7 5 2
29 29 H 1.09004 * 109.47282 * 274.31515 * 1 2 3
30 30 H 1.09004 * 109.47363 * 34.31105 * 1 2 3
31 31 H 1.09004 * 109.47299 * 154.31357 * 1 2 3
32 32 H 1.09002 * 117.49285 * 145.02040 * 4 2 1
33 33 H 1.08994 * 117.51642 * 359.97438 * 4 2 1
34 34 H 1.08000 * 126.58026 * 0.06043 * 8 7 5
35 35 H 1.08004 * 126.58242 * 180.02562 * 9 8 7
36 36 H 1.08993 * 109.47046 * 329.99433 * 11 10 9
37 37 H 1.09002 * 109.46695 * 209.99537 * 11 10 9
38 38 H 1.08993 * 109.47839 * 59.99643 * 12 11 10
39 39 H 1.09002 * 109.46719 * 299.99801 * 12 11 10
40 40 H 0.97004 * 120.00071 * 0.02562 * 15 13 12
41 41 H 1.09001 * 109.47464 * 59.99570 * 16 15 13
42 42 H 1.09002 * 109.47021 * 299.99962 * 16 15 13
43 43 H 1.09001 * 109.47002 * 179.97438 * 18 17 16
44 44 H 1.08993 * 109.46955 * 300.00075 * 18 17 16
45 45 H 1.09000 * 109.47050 * 59.99904 * 18 17 16
46 46 H 1.09000 * 109.47140 * 300.00547 * 19 17 16
47 47 H 1.09001 * 109.47230 * 59.99691 * 19 17 16
48 48 H 1.09001 * 109.47375 * 180.02562 * 19 17 16
49 49 H 0.97001 * 120.00306 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0003 0.9834 0.0000
4 6 2.2364 -1.1210 -0.7650
5 6 2.2364 -1.1210 0.7651
6 1 1.6115 -1.8588 1.2681
7 6 3.5292 -0.7811 1.4608
8 6 3.7638 -0.8881 2.7810
9 6 5.0960 -0.4663 2.9959
10 6 5.5957 -0.1261 1.7943
11 6 6.9893 0.3838 1.5315
12 6 7.9200 -0.7975 1.2501
13 6 9.3134 -0.2875 0.9868
14 8 9.5397 0.9035 1.0203
15 7 10.3082 -1.1550 0.7139
16 6 11.6628 -0.6594 0.4585
17 6 12.5936 -1.8406 0.1769
18 6 12.6124 -2.7749 1.3885
19 6 12.0906 -2.6053 -1.0491
20 6 13.9869 -1.3306 -0.0865
21 1 14.1885 -0.2700 -0.0565
22 6 15.0045 -2.2181 -0.3657
23 7 14.7593 -3.5097 -0.4016
24 14 16.7316 -1.5859 -0.6929
25 1 17.2201 -0.8424 0.4961
26 1 17.6352 -2.7326 -0.9648
27 1 16.7125 -0.6803 -1.8696
28 8 4.6405 -0.3135 0.8689
29 1 -0.3634 0.0773 1.0248
30 1 -0.3634 0.8489 -0.5793
31 1 -0.3634 -0.9261 -0.4454
32 1 3.1715 -0.8751 -1.2682
33 1 1.6115 -1.8589 -1.2679
34 1 3.0682 -1.2311 3.5326
35 1 5.6134 -0.4250 3.9431
36 1 7.3475 0.9287 2.4049
37 1 6.9759 1.0493 0.6683
38 1 7.5618 -1.3423 0.3768
39 1 7.9333 -1.4630 2.1133
40 1 10.1271 -2.1076 0.6867
41 1 12.0210 -0.1142 1.3317
42 1 11.6495 0.0060 -0.4049
43 1 13.2751 -3.6167 1.1878
44 1 12.9707 -2.2301 2.2618
45 1 11.6045 -3.1437 1.5786
46 1 11.0827 -2.9741 -0.8590
47 1 12.0771 -1.9397 -1.9121
48 1 12.7535 -3.4471 -1.2494
49 1 15.4753 -4.1341 -0.5977
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000590916031.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:23:30
Heat of formation + Delta-G solvation = -36.769068 kcal
Electronic energy + Delta-G solvation = -25920.376220 eV
Core-core repulsion = 22234.550595 eV
Total energy + Delta-G solvation = -3685.825625 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-43.59990 -40.78477 -38.68655 -38.17642 -35.03144 -34.97292 -33.78420 -32.72139
-30.61291 -28.95250 -27.55998 -27.50073 -26.98222 -25.23488 -23.02958 -22.71185
-21.67213 -21.35682 -20.79477 -20.58197 -18.56720 -17.83991 -17.55889 -17.04763
-16.80071 -16.68547 -16.33978 -15.90962 -15.39669 -15.15823 -14.82271 -14.64414
-14.49931 -14.13189 -13.96404 -13.92093 -13.73287 -13.38832 -13.19994 -13.15453
-13.05962 -12.99235 -12.76430 -12.66332 -12.62425 -12.37820 -12.24928 -12.13421
-12.07931 -11.55000 -11.48082 -11.27989 -11.01808 -10.89927 -10.73523 -10.66556
-10.39420 -9.92693 -9.11138 -8.02038 -6.17763 0.66802 1.43873 1.45083
1.51575 1.61329 1.69775 1.86600 2.36755 2.52252 2.87822 3.21349
3.43574 3.67541 3.84056 3.89176 3.91681 4.04171 4.16425 4.18783
4.35492 4.39736 4.45183 4.51944 4.58887 4.69799 4.72557 4.77429
4.88984 4.90971 4.94942 4.97600 5.00937 5.06294 5.08206 5.11962
5.14619 5.18290 5.19992 5.23152 5.37970 5.40113 5.60336 5.62832
5.67246 5.67563 6.15509 6.22113 6.23755 6.43694 6.67897 6.86265
7.32914 7.49744 8.96541
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.029305 B = 0.001916 C = 0.001885
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 955.237009 B =14613.125653 C =14847.467323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.139 4.139
3 H 0.091 0.909
4 C -0.167 4.167
5 C -0.086 4.086
6 H 0.155 0.845
7 C 0.003 3.997
8 C -0.211 4.211
9 C -0.208 4.208
10 C -0.022 4.022
11 C -0.016 4.016
12 C -0.124 4.124
13 C 0.506 3.494
14 O -0.592 6.592
15 N -0.712 5.712
16 C 0.148 3.852
17 C 0.049 3.951
18 C -0.120 4.120
19 C -0.121 4.121
20 C -0.529 4.529
21 H 0.044 0.956
22 C 0.028 3.972
23 N -0.899 5.899
24 Si 0.945 3.055
25 H -0.277 1.277
26 H -0.283 1.283
27 H -0.278 1.278
28 O -0.191 6.191
29 H 0.068 0.932
30 H 0.067 0.933
31 H 0.070 0.930
32 H 0.084 0.916
33 H 0.123 0.877
34 H 0.168 0.832
35 H 0.164 0.836
36 H 0.102 0.898
37 H 0.074 0.926
38 H 0.109 0.891
39 H 0.121 0.879
40 H 0.410 0.590
41 H 0.039 0.961
42 H 0.036 0.964
43 H 0.062 0.938
44 H 0.018 0.982
45 H 0.038 0.962
46 H 0.038 0.962
47 H 0.017 0.983
48 H 0.062 0.938
49 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.035 0.694 3.997 28.327
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.158 4.158
3 H 0.109 0.891
4 C -0.204 4.204
5 C -0.104 4.104
6 H 0.172 0.828
7 C -0.047 4.047
8 C -0.229 4.229
9 C -0.227 4.227
10 C -0.072 4.072
11 C -0.054 4.054
12 C -0.164 4.164
13 C 0.294 3.706
14 O -0.474 6.474
15 N -0.363 5.363
16 C 0.024 3.976
17 C 0.048 3.952
18 C -0.178 4.178
19 C -0.179 4.179
20 C -0.568 4.568
21 H 0.062 0.938
22 C -0.172 4.172
23 N -0.537 5.537
24 Si 0.771 3.229
25 H -0.203 1.203
26 H -0.208 1.208
27 H -0.203 1.203
28 O -0.089 6.089
29 H 0.087 0.913
30 H 0.086 0.914
31 H 0.089 0.911
32 H 0.102 0.898
33 H 0.141 0.859
34 H 0.185 0.815
35 H 0.182 0.818
36 H 0.120 0.880
37 H 0.093 0.907
38 H 0.127 0.873
39 H 0.139 0.861
40 H 0.247 0.753
41 H 0.057 0.943
42 H 0.055 0.945
43 H 0.080 0.920
44 H 0.037 0.963
45 H 0.057 0.943
46 H 0.057 0.943
47 H 0.036 0.964
48 H 0.081 0.919
49 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -27.724 1.398 3.673 28.001
hybrid contribution 1.527 0.042 -0.091 1.530
sum -26.197 1.440 3.582 26.480
Atomic orbital electron populations
1.21394 0.90327 1.03125 1.02786 1.22551 0.96758 0.93886 1.02584
0.89115 1.23241 1.02879 1.01956 0.92314 1.20798 0.91189 1.03892
0.94483 0.82795 1.21911 0.87656 1.02778 0.92313 1.21781 0.97703
1.07822 0.95644 1.21883 0.96019 1.06065 0.98729 1.22455 0.91404
1.05817 0.87512 1.19728 0.84505 0.96618 1.04541 1.21629 0.89267
0.99530 1.05982 1.21180 0.87807 0.86032 0.75630 1.90662 1.84945
1.17836 1.53915 1.46169 1.08988 1.10899 1.70246 1.21250 0.80958
0.97222 0.98214 1.18381 0.92280 0.91148 0.93382 1.21664 0.99031
1.00586 0.96513 1.21672 0.98203 1.00661 0.97316 1.21242 0.94299
0.92776 1.48439 0.93790 1.25456 1.01576 0.95161 0.95027 1.69898
1.33007 1.01559 1.49247 0.85829 0.80790 0.77795 0.78455 1.20268
1.20805 1.20341 1.83913 1.20480 1.65840 1.38618 0.91318 0.91371
0.91101 0.89767 0.85927 0.81480 0.81833 0.87955 0.90719 0.87283
0.86118 0.75314 0.94296 0.94515 0.91954 0.96290 0.94286 0.94349
0.96417 0.91920 0.93026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.97 10.19 71.98 0.73 -0.24 16
2 C -0.14 -1.83 6.11 -10.79 -0.07 -1.89 16
3 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16
4 C -0.17 -2.26 9.81 30.60 0.30 -1.96 16
5 C -0.09 -1.22 5.96 -11.54 -0.07 -1.29 16
6 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16
7 C 0.00 0.06 6.80 24.83 0.17 0.23 16
8 C -0.21 -3.95 10.81 22.19 0.24 -3.71 16
9 C -0.21 -4.19 10.81 22.19 0.24 -3.95 16
10 C -0.02 -0.51 6.58 24.83 0.16 -0.35 16
11 C -0.02 -0.37 5.04 29.85 0.15 -0.22 16
12 C -0.12 -2.76 5.68 29.85 0.17 -2.59 16
13 C 0.51 16.17 7.83 87.66 0.69 16.86 16
14 O -0.59 -23.80 15.98 -3.02 -0.05 -23.84 16
15 N -0.71 -23.81 4.96 -463.07 -2.30 -26.10 16
16 C 0.15 6.23 4.50 86.38 0.39 6.62 16
17 C 0.05 2.24 0.50 -52.93 -0.03 2.22 16
18 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16
19 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16
20 C -0.53 -27.99 8.01 25.60 0.21 -27.78 16
21 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16
22 C 0.03 1.46 5.15 84.66 0.44 1.89 16
23 N -0.90 -47.83 9.35 21.45 0.20 -47.63 16
24 Si 0.94 42.66 29.54 68.60 2.03 44.68 16
25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
27 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16
28 O -0.19 -4.64 10.36 -2.56 -0.03 -4.66 16
29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16
30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
31 H 0.07 0.43 7.90 -2.38 -0.02 0.41 16
32 H 0.08 1.44 7.97 -2.39 -0.02 1.42 16
33 H 0.12 1.14 8.05 -2.39 -0.02 1.12 16
34 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16
35 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16
36 H 0.10 2.32 8.10 -2.39 -0.02 2.30 16
37 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16
38 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16
39 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16
40 H 0.41 11.79 6.16 -92.71 -0.57 11.22 16
41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16
42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
43 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16
44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16
45 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16
46 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16
47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16
48 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16
49 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16
Total: -1.00 -63.40 397.17 5.10 -58.30
By element:
Atomic # 1 Polarization: 24.51 SS G_CDS: 0.36 Total: 24.87 kcal
Atomic # 6 Polarization: -30.49 SS G_CDS: 4.88 Total: -25.61 kcal
Atomic # 7 Polarization: -71.64 SS G_CDS: -2.10 Total: -73.74 kcal
Atomic # 8 Polarization: -28.43 SS G_CDS: -0.07 Total: -28.51 kcal
Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal
Total: -63.40 5.10 -58.30 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590916031.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.535 kcal
(2) G-P(sol) polarization free energy of solvation -63.400 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.769 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds