Wall clock time and date at job start Tue Mar 31 2020 12:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47433 * 2 1 4 4 C 1.35893 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05957 * 180.02562 * 4 3 2 6 6 C 1.38138 * 119.94337 * 180.30421 * 5 4 3 7 7 C 1.38270 * 120.05794 * 359.46080 * 6 5 4 8 8 C 1.50697 * 119.94421 * 180.26220 * 7 6 5 9 9 C 1.53002 * 109.46967 * 270.25509 * 8 7 6 10 10 H 1.09000 * 109.47001 * 55.00447 * 9 8 7 11 11 C 1.53005 * 109.47092 * 294.99851 * 9 8 7 12 12 C 1.50702 * 109.47021 * 175.00048 * 9 8 7 13 13 O 1.21280 * 120.00022 * 0.02562 * 12 9 8 14 14 N 1.34781 * 120.00023 * 179.97438 * 12 9 8 15 15 C 1.46495 * 120.00036 * 179.97438 * 14 12 9 16 16 H 1.09000 * 109.46984 * 35.00320 * 15 14 12 17 17 C 1.50700 * 109.47077 * 155.00237 * 15 14 12 18 18 H 1.08006 * 119.99906 * 0.02562 * 17 15 14 19 19 C 1.37871 * 120.00247 * 179.97438 * 17 15 14 20 20 N 1.31517 * 120.00089 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00433 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46971 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46894 * 119.99901 * 21 19 17 24 24 H 1.48493 * 109.47323 * 240.00100 * 21 19 17 25 25 C 1.52997 * 109.47184 * 275.00263 * 15 14 12 26 26 C 1.52994 * 109.47246 * 64.99878 * 25 15 14 27 27 C 1.38259 * 120.10998 * 0.51383 * 7 6 5 28 28 C 1.38146 * 120.05869 * 359.76954 * 27 7 6 29 29 H 1.08994 * 109.46893 * 300.00316 * 1 2 3 30 30 H 1.09001 * 109.46536 * 59.99754 * 1 2 3 31 31 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47184 * 240.00253 * 2 1 3 33 33 H 1.09001 * 109.46987 * 119.99960 * 2 1 3 34 34 H 1.08002 * 120.02291 * 0.02562 * 5 4 3 35 35 H 1.08004 * 119.96766 * 179.69880 * 6 5 4 36 36 H 1.08999 * 109.47575 * 30.25213 * 8 7 6 37 37 H 1.09002 * 109.47295 * 150.25537 * 8 7 6 38 38 H 1.08996 * 109.46804 * 300.00281 * 11 9 8 39 39 H 1.09000 * 109.46724 * 59.99926 * 11 9 8 40 40 H 1.08997 * 109.46842 * 179.97438 * 11 9 8 41 41 H 0.97003 * 119.99742 * 0.02562 * 14 12 9 42 42 H 0.97001 * 120.00515 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.46992 * 185.00475 * 25 15 14 44 44 H 1.09006 * 109.47021 * 304.99944 * 25 15 14 45 45 H 1.08995 * 109.47735 * 300.00027 * 26 25 15 46 46 H 1.09006 * 109.47057 * 60.00088 * 26 25 15 47 47 H 1.09007 * 109.47395 * 179.97438 * 26 25 15 48 48 H 1.08006 * 119.97187 * 179.74376 * 27 7 6 49 49 H 1.07993 * 120.03340 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8068 0.0011 6 6 5.2551 2.9850 -0.0047 7 6 6.0963 1.8877 0.0002 8 6 7.5902 2.0851 -0.0002 9 6 8.0954 2.1522 -1.4428 10 1 7.5541 2.9300 -1.9815 11 6 7.8653 0.8032 -2.1271 12 6 9.5682 2.4718 -1.4450 13 8 10.1559 2.6298 -0.3960 14 7 10.2324 2.5809 -2.6127 15 6 11.6639 2.8921 -2.6148 16 1 12.1400 2.4180 -1.7566 17 6 12.2885 2.3749 -3.8850 18 1 11.6798 1.8657 -4.6177 19 6 13.6366 2.5526 -4.1124 20 7 14.3777 3.1731 -3.2205 21 14 14.4111 1.9109 -5.6865 22 1 13.3704 1.2552 -6.5186 23 1 15.0077 3.0420 -6.4415 24 1 15.4705 0.9259 -5.3512 25 6 11.8565 4.4077 -2.5322 26 6 11.3339 4.9156 -1.1870 27 6 5.5690 0.6096 0.0002 28 6 4.1998 0.4259 0.0001 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2285 3.6642 0.0015 35 1 5.6693 3.9825 -0.0092 36 1 7.8341 3.0149 0.5137 37 1 8.0672 1.2503 0.5134 38 1 8.4066 0.0256 -1.5883 39 1 6.8000 0.5721 -2.1254 40 1 8.2247 0.8512 -3.1549 41 1 9.7623 2.4542 -3.4517 42 1 15.3263 3.2979 -3.3803 43 1 12.9165 4.6447 -2.6232 44 1 11.3060 4.8885 -3.3409 45 1 10.2739 4.6786 -1.0960 46 1 11.8844 4.4347 -0.3783 47 1 11.4715 5.9953 -1.1279 48 1 6.2282 -0.2460 -0.0002 49 1 3.7885 -0.5727 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591075734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:30 Heat of formation + Delta-G solvation = -94.539910 kcal Electronic energy + Delta-G solvation = -26577.121065 eV Core-core repulsion = 22888.790308 eV Total energy + Delta-G solvation = -3688.330757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.27605 -40.72693 -38.86174 -37.00543 -35.50192 -34.24666 -32.96712 -32.48446 -31.87401 -30.69341 -28.85708 -27.31098 -25.42234 -24.92961 -24.05205 -22.94709 -22.08967 -21.35314 -20.68507 -19.18289 -18.82133 -17.52199 -17.21039 -17.00184 -16.94017 -16.39610 -16.10967 -16.02808 -15.41080 -15.01993 -14.79002 -14.61389 -14.45729 -14.33002 -14.17024 -13.86917 -13.61809 -13.35490 -13.23778 -13.18436 -13.00730 -12.86737 -12.78743 -12.69471 -12.55536 -12.26845 -12.12181 -12.09395 -12.02718 -11.88020 -11.59211 -11.55384 -11.48405 -11.01636 -10.57806 -10.39787 -9.90037 -9.55692 -8.99092 -8.14837 -6.31800 0.42722 0.46801 1.43679 1.45051 1.56587 1.94986 2.30329 2.37586 2.66741 2.87544 3.14477 3.83190 3.84605 3.98423 4.00887 4.07397 4.07908 4.21753 4.28183 4.38751 4.44539 4.49989 4.50971 4.56904 4.59367 4.64264 4.78839 4.85737 4.91809 4.92934 4.95887 4.99060 5.09369 5.15742 5.21418 5.25538 5.29847 5.32464 5.37644 5.44839 5.46535 5.58641 5.67971 5.77278 5.82544 5.86982 5.96822 6.19946 6.50726 6.77445 7.07030 7.35833 7.66850 8.90497 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025845 B = 0.002278 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.137230 B =12290.296597 C =12930.064748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.112 3.888 5 C -0.160 4.160 6 C -0.081 4.081 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.094 4.094 10 H 0.109 0.891 11 C -0.139 4.139 12 C 0.501 3.499 13 O -0.589 6.589 14 N -0.706 5.706 15 C 0.278 3.722 16 H -0.003 1.003 17 C -0.545 4.545 18 H 0.071 0.929 19 C 0.014 3.986 20 N -0.915 5.915 21 Si 0.969 3.031 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.285 1.285 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.077 4.077 28 C -0.207 4.207 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.401 0.599 42 H 0.264 0.736 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.045 0.955 46 H 0.024 0.976 47 H 0.044 0.956 48 H 0.136 0.864 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.113 -6.015 3.577 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.067 3.933 5 C -0.179 4.179 6 C -0.099 4.099 7 C -0.118 4.118 8 C -0.086 4.086 9 C -0.115 4.115 10 H 0.127 0.873 11 C -0.196 4.196 12 C 0.288 3.712 13 O -0.470 6.470 14 N -0.354 5.354 15 C 0.174 3.826 16 H 0.015 0.985 17 C -0.583 4.583 18 H 0.089 0.911 19 C -0.186 4.186 20 N -0.554 5.554 21 Si 0.794 3.206 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.211 1.211 25 C -0.160 4.160 26 C -0.180 4.180 27 C -0.095 4.095 28 C -0.226 4.226 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.236 0.764 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.063 0.937 48 H 0.154 0.846 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.664 -5.717 4.333 26.648 hybrid contribution 0.950 -0.331 -0.842 1.312 sum -24.714 -6.048 3.491 25.681 Atomic orbital electron populations 1.21805 0.91620 1.04107 1.03136 1.23040 0.96810 0.80897 1.02208 1.86044 1.18927 1.31172 1.88739 1.19170 0.82605 0.94538 0.96978 1.20578 0.95286 0.95319 1.06721 1.21037 0.92083 0.99314 0.97421 1.19742 0.94739 0.93688 1.03595 1.20194 0.90835 1.02963 0.94657 1.21261 0.90338 1.01188 0.98760 0.87332 1.21810 1.03268 0.94200 1.00340 1.21212 0.90379 0.76035 0.83531 1.90644 1.70907 1.52605 1.32882 1.46277 1.11126 1.69796 1.08238 1.18333 0.76854 0.91899 0.95511 0.98543 1.21618 0.94470 1.37754 1.04454 0.91122 1.25772 0.97649 0.95119 1.00089 1.70059 1.06762 1.42295 1.36253 0.85344 0.78317 0.77903 0.79042 1.18427 1.20562 1.21089 1.21784 1.01853 0.97492 0.94916 1.21672 1.00118 0.98628 0.97574 1.21047 0.94587 0.96941 0.96925 1.21410 0.93977 0.98696 1.08493 0.91910 0.91896 0.88289 0.91178 0.91262 0.84548 0.84483 0.91550 0.91517 0.92919 0.89694 0.91664 0.76402 0.92690 0.91165 0.94167 0.93552 0.95645 0.93708 0.84620 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.04 0.54 5.46 71.98 0.39 0.93 16 3 O -0.33 -6.34 10.14 -92.34 -0.94 -7.28 16 4 C 0.11 2.26 6.69 22.51 0.15 2.41 16 5 C -0.16 -3.25 9.99 22.37 0.22 -3.02 16 6 C -0.08 -1.67 9.69 22.25 0.22 -1.45 16 7 C -0.12 -2.56 4.71 -19.85 -0.09 -2.65 16 8 C -0.05 -1.27 4.18 29.85 0.12 -1.14 16 9 C -0.09 -2.54 2.71 -11.54 -0.03 -2.57 16 10 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 11 C -0.14 -3.16 8.66 71.98 0.62 -2.54 16 12 C 0.50 19.16 5.72 87.66 0.50 19.67 16 13 O -0.59 -27.41 13.06 -3.03 -0.04 -27.45 16 14 N -0.71 -28.69 4.91 -446.10 -2.19 -30.88 16 15 C 0.28 14.21 2.24 44.25 0.10 14.31 16 16 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 17 C -0.54 -28.75 8.73 25.60 0.22 -28.52 16 18 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 19 C 0.01 0.73 5.29 84.65 0.45 1.18 16 20 N -0.92 -52.53 11.29 21.45 0.24 -52.28 16 21 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 C -0.12 -6.01 5.45 30.59 0.17 -5.85 16 26 C -0.12 -5.55 8.52 71.98 0.61 -4.94 16 27 C -0.08 -1.49 7.95 22.25 0.18 -1.31 16 28 C -0.21 -3.71 9.04 22.37 0.20 -3.51 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 33 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 34 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.07 1.90 7.90 -2.39 -0.02 1.88 16 37 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.60 6.26 -2.39 -0.01 1.58 16 40 H 0.06 1.44 7.56 -2.39 -0.02 1.43 16 41 H 0.40 13.95 7.96 -92.71 -0.74 13.21 16 42 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.07 3.90 5.95 -2.38 -0.01 3.89 16 44 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.05 2.00 5.65 -2.39 -0.01 1.99 16 46 H 0.02 1.23 7.85 -2.38 -0.02 1.22 16 47 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.14 2.29 8.04 -2.91 -0.02 2.27 16 49 H 0.15 1.90 6.30 -2.91 -0.02 1.88 16 Total: -1.00 -67.07 389.19 4.07 -63.00 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.19 Total: 30.27 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.78 Total: -19.54 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.95 Total: -83.16 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.98 Total: -34.73 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -67.07 4.07 -63.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591075734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.539 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds