Wall clock time and date at job start Tue Mar 31 2020 12:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.46629 * 2 1 4 4 C 1.35901 * 116.99619 * 179.97438 * 3 2 1 5 5 C 1.38733 * 120.05299 * 179.97438 * 4 3 2 6 6 C 1.38143 * 119.94378 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05498 * 0.03097 * 6 5 4 8 8 C 1.50700 * 119.94547 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47081 * 89.99493 * 8 7 6 10 10 H 1.09000 * 109.47312 * 305.00127 * 9 8 7 11 11 C 1.52997 * 109.47092 * 65.00248 * 9 8 7 12 12 C 1.50696 * 109.47300 * 185.00079 * 9 8 7 13 13 O 1.21284 * 120.00109 * 0.02562 * 12 9 8 14 14 N 1.34777 * 120.00137 * 179.97438 * 12 9 8 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 9 16 16 H 1.09000 * 109.47131 * 35.00870 * 15 14 12 17 17 C 1.50703 * 109.46762 * 155.00210 * 15 14 12 18 18 H 1.08004 * 120.00026 * 0.02562 * 17 15 14 19 19 C 1.37878 * 119.99838 * 180.02562 * 17 15 14 20 20 N 1.31516 * 119.99766 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99954 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47426 * 59.99910 * 21 19 17 23 23 H 1.48506 * 109.47145 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46975 * 299.99805 * 21 19 17 25 25 C 1.52998 * 109.47262 * 275.00296 * 15 14 12 26 26 C 1.52999 * 109.47021 * 65.00206 * 25 15 14 27 27 C 1.38264 * 120.11138 * 0.24408 * 7 6 5 28 28 C 1.38147 * 120.05435 * 359.45381 * 27 7 6 29 29 H 1.09004 * 109.47185 * 60.00747 * 1 2 3 30 30 H 1.09007 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47577 * 299.99853 * 1 2 3 32 32 H 1.08996 * 109.47072 * 240.00046 * 2 1 3 33 33 H 1.09002 * 109.46684 * 119.99361 * 2 1 3 34 34 H 1.08003 * 120.02905 * 0.02562 * 5 4 3 35 35 H 1.08004 * 119.97419 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47269 * 330.00290 * 8 7 6 37 37 H 1.08995 * 109.47384 * 209.99392 * 8 7 6 38 38 H 1.08998 * 109.47624 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47045 * 299.99867 * 11 9 8 40 40 H 1.09000 * 109.47140 * 59.99774 * 11 9 8 41 41 H 0.96995 * 120.00018 * 0.27749 * 14 12 9 42 42 H 0.97005 * 119.99620 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.46883 * 185.00369 * 25 15 14 44 44 H 1.09004 * 109.46862 * 304.99987 * 25 15 14 45 45 H 1.09007 * 109.46942 * 179.97438 * 26 25 15 46 46 H 1.09004 * 109.46916 * 299.99584 * 26 25 15 47 47 H 1.08997 * 109.47126 * 60.00157 * 26 25 15 48 48 H 1.07998 * 119.96976 * 179.70674 * 27 7 6 49 49 H 1.08000 * 120.02900 * 180.24523 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 3.8849 2.8069 0.0000 6 6 5.2548 2.9854 0.0001 7 6 6.0961 1.8880 -0.0001 8 6 7.5901 2.0855 -0.0006 9 6 8.0962 2.1527 1.4417 10 1 7.5552 2.9304 1.9808 11 6 7.8665 0.8038 2.1261 12 6 9.5688 2.4723 1.4430 13 8 10.1558 2.6312 0.3936 14 7 10.2335 2.5826 2.6102 15 6 11.6654 2.8927 2.6114 16 1 11.8913 3.5690 1.7869 17 6 12.0358 3.5499 3.9160 18 1 11.2804 3.7192 4.6691 19 6 13.3392 3.9351 4.1481 20 7 14.2592 3.7285 3.2313 21 14 13.7986 4.7490 5.7655 22 1 13.4916 3.8272 6.8884 23 1 15.2500 5.0636 5.7667 24 1 13.0198 6.0030 5.9273 25 6 12.4673 1.6004 2.4455 26 6 12.1847 0.9982 1.0677 27 6 5.5689 0.6099 -0.0053 28 6 4.1997 0.4261 0.0010 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.2282 3.6644 -0.0004 35 1 5.6690 3.9828 -0.0008 36 1 7.8335 3.0154 -0.5147 37 1 8.0667 1.2508 -0.5144 38 1 8.2266 0.8517 3.1538 39 1 6.8013 0.5726 2.1252 40 1 8.4075 0.0261 1.5870 41 1 9.7648 2.4523 3.4494 42 1 15.1762 3.9991 3.3948 43 1 13.5313 1.8190 2.5352 44 1 12.1758 0.8901 3.2193 45 1 12.7565 0.0777 0.9493 46 1 11.1206 0.7795 0.9780 47 1 12.4762 1.7085 0.2940 48 1 6.2281 -0.2456 -0.0102 49 1 3.7884 -0.5725 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591075736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:37 Heat of formation + Delta-G solvation = -77.939296 kcal Electronic energy + Delta-G solvation = -26596.242921 eV Core-core repulsion = 22908.632021 eV Total energy + Delta-G solvation = -3687.610900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.40809 -39.31433 -37.95780 -35.25329 -34.26243 -32.42349 -32.08505 -31.11712 -30.88887 -29.72161 -26.91693 -26.34016 -24.43959 -23.53101 -22.64253 -22.19436 -20.97585 -19.70801 -19.10846 -18.46177 -17.10527 -16.39821 -16.14897 -16.02753 -15.32446 -15.09129 -14.87207 -14.45371 -14.41249 -13.82727 -13.72275 -13.63826 -13.42988 -13.15469 -12.88815 -12.74030 -12.62716 -12.11112 -12.03481 -11.95754 -11.82296 -11.47372 -11.32575 -11.23266 -11.14921 -10.97396 -10.94365 -10.79943 -10.71488 -10.68538 -10.30045 -10.13224 -9.60284 -9.11949 -9.02912 -8.83211 -8.47054 -8.15572 -7.75907 -6.10389 -4.19679 1.22557 1.30847 2.94366 3.26219 3.31625 3.32725 3.49089 3.61981 4.15688 4.40262 4.53099 4.53426 4.70700 4.76513 4.85859 4.96655 5.08069 5.08852 5.17699 5.20926 5.29031 5.35923 5.37674 5.38337 5.57606 5.63785 5.74497 5.83078 5.91914 5.93808 6.05810 6.17236 6.25903 6.30548 6.35680 6.41244 6.48760 6.65130 6.67180 6.69131 7.06652 7.22768 7.23239 7.40222 7.51652 7.64532 7.76951 7.93604 8.21149 8.73366 8.81034 9.20984 9.48082 10.94768 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.002254 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.905947 B =12419.433654 C =12815.152653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.119 3.881 5 C -0.150 4.150 6 C -0.077 4.077 7 C -0.108 4.108 8 C -0.057 4.057 9 C -0.108 4.108 10 H 0.090 0.910 11 C -0.143 4.143 12 C 0.505 3.495 13 O -0.551 6.551 14 N -0.708 5.708 15 C 0.270 3.730 16 H 0.048 0.952 17 C -0.534 4.534 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.882 5.882 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.127 4.127 26 C -0.136 4.136 27 C -0.075 4.075 28 C -0.208 4.208 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.387 0.613 42 H 0.264 0.736 43 H 0.098 0.902 44 H 0.030 0.970 45 H 0.021 0.979 46 H 0.039 0.961 47 H 0.049 0.951 48 H 0.125 0.875 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.164 -8.093 -4.990 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.074 3.926 5 C -0.169 4.169 6 C -0.095 4.095 7 C -0.108 4.108 8 C -0.095 4.095 9 C -0.129 4.129 10 H 0.108 0.892 11 C -0.201 4.201 12 C 0.290 3.710 13 O -0.430 6.430 14 N -0.356 5.356 15 C 0.168 3.832 16 H 0.066 0.934 17 C -0.572 4.572 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.166 4.166 26 C -0.194 4.194 27 C -0.093 4.093 28 C -0.226 4.226 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.219 0.781 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.143 0.857 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.655 -7.800 -5.767 24.645 hybrid contribution 0.147 0.074 1.360 1.370 sum -22.509 -7.727 -4.407 24.202 Atomic orbital electron populations 1.21776 0.92833 1.02810 1.03505 1.22753 0.95776 0.82161 1.01369 1.86054 1.19307 1.29107 1.88903 1.18970 0.82040 0.94241 0.97343 1.20408 0.95213 0.94693 1.06580 1.20938 0.91936 0.99052 0.97551 1.19909 0.96073 0.92886 1.01946 1.20337 0.89445 1.04100 0.95574 1.21296 0.94562 0.99515 0.97547 0.89169 1.21821 1.01969 0.95783 1.00530 1.20312 0.88324 0.77651 0.84762 1.90659 1.69567 1.51226 1.31531 1.46491 1.12800 1.69408 1.06857 1.18754 0.73782 0.92919 0.97708 0.93396 1.21209 0.94519 1.40162 1.01344 0.92220 1.24888 0.96219 0.95574 0.97031 1.69889 1.02244 1.46291 1.33537 0.86528 0.77422 0.79818 0.83437 1.20210 1.21162 1.20211 1.21923 1.04505 0.96809 0.93333 1.21836 0.99490 0.98561 0.99497 1.20895 0.94037 0.96999 0.97376 1.21197 0.94365 0.97813 1.09272 0.91553 0.90421 0.91523 0.92124 0.92077 0.85423 0.85207 0.90112 0.90488 0.92105 0.91844 0.92282 0.78078 0.92553 0.88400 0.95154 0.96003 0.94196 0.93202 0.85714 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.31 10.14 -19.43 -0.20 -3.51 16 4 C 0.12 1.31 6.69 -39.22 -0.26 1.04 16 5 C -0.15 -1.64 9.99 -39.43 -0.39 -2.04 16 6 C -0.08 -0.85 9.69 -39.60 -0.38 -1.24 16 7 C -0.11 -1.25 4.71 -104.60 -0.49 -1.75 16 8 C -0.06 -0.76 4.19 -27.88 -0.12 -0.87 16 9 C -0.11 -1.52 2.71 -91.77 -0.25 -1.77 16 10 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.14 -1.75 8.67 37.16 0.32 -1.42 16 12 C 0.50 9.64 5.72 -10.99 -0.06 9.58 16 13 O -0.55 -12.46 13.06 5.55 0.07 -12.38 16 14 N -0.71 -14.42 4.91 -54.93 -0.27 -14.69 16 15 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 16 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 17 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 20 N -0.88 -24.71 11.29 55.43 0.63 -24.08 16 21 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 26 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 27 C -0.07 -0.80 7.97 -39.61 -0.32 -1.11 16 28 C -0.21 -2.10 9.04 -39.43 -0.36 -2.45 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 33 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 37 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 39 H 0.06 0.68 6.28 -51.93 -0.33 0.35 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.39 6.95 7.96 -40.82 -0.32 6.62 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 47 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 48 H 0.12 1.18 8.05 -52.49 -0.42 0.76 16 49 H 0.12 0.99 6.30 -52.49 -0.33 0.66 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -30.43 389.24 -9.20 -39.63 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.17 Total: 7.46 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.10 Total: -13.88 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.36 Total: -38.78 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.12 Total: -15.89 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.43 -9.20 -39.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591075736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.312 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds