Wall clock time and date at job start Tue Mar 31 2020 14:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.42897 * 113.99495 * 149.99936 * 4 2 1 6 6 H 1.08998 * 109.47610 * 30.00051 * 5 4 2 7 7 C 1.53000 * 109.46933 * 150.00455 * 5 4 2 8 8 N 1.46907 * 109.46735 * 299.99422 * 7 5 4 9 9 C 1.47443 * 110.99647 * 69.88065 * 8 7 5 10 10 C 1.54316 * 107.23769 * 123.25480 * 9 8 7 11 11 C 1.55143 * 103.01815 * 22.27999 * 10 9 8 12 12 O 1.42902 * 110.99060 * 82.47639 * 11 10 9 13 13 C 1.50698 * 110.99223 * 206.25806 * 11 10 9 14 14 H 1.07995 * 120.00008 * 118.54857 * 13 11 10 15 15 C 1.37881 * 119.99737 * 298.54614 * 13 11 10 16 16 N 1.31517 * 119.99838 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99952 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47462 * 59.99645 * 17 15 13 19 19 H 1.48499 * 109.47172 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46885 * 299.99904 * 17 15 13 21 21 C 1.47849 * 110.99824 * 190.71486 * 8 7 5 22 22 C 1.50702 * 109.47365 * 270.00217 * 5 4 2 23 23 C 1.38238 * 119.99529 * 324.72658 * 22 5 4 24 24 C 1.38241 * 119.99863 * 179.78570 * 23 22 5 25 25 C 1.38236 * 119.99912 * 0.44673 * 24 23 22 26 26 C 1.38243 * 119.99653 * 359.80967 * 25 24 23 27 27 C 1.38229 * 120.00275 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.08993 * 109.47683 * 59.99656 * 7 5 4 36 36 H 1.09007 * 109.47085 * 180.02562 * 7 5 4 37 37 H 1.09003 * 109.88867 * 242.66071 * 9 8 7 38 38 H 1.09003 * 109.89146 * 3.84576 * 9 8 7 39 39 H 1.08994 * 110.70817 * 140.66080 * 10 9 8 40 40 H 1.09001 * 110.70522 * 263.90061 * 10 9 8 41 41 H 0.96695 * 113.99938 * 61.44862 * 12 11 10 42 42 H 0.97005 * 119.99500 * 180.02562 * 16 15 13 43 43 H 1.08995 * 110.37174 * 332.47183 * 21 8 7 44 44 H 1.08998 * 110.36892 * 94.81236 * 21 8 7 45 45 H 1.07996 * 120.00047 * 0.02562 * 23 22 5 46 46 H 1.07999 * 120.00304 * 180.27638 * 24 23 22 47 47 H 1.07995 * 120.00305 * 179.82645 * 25 24 23 48 48 H 1.07999 * 119.99454 * 180.02562 * 26 25 24 49 49 H 1.07997 * 119.99821 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2659 -1.3245 0.9887 6 1 3.8530 -0.7831 0.2469 7 6 4.0210 -1.3471 2.3192 8 7 4.2423 0.0301 2.7800 9 6 2.9753 0.6571 3.1988 10 6 3.1547 1.1189 4.6603 11 6 4.6950 1.2387 4.8023 12 8 5.1604 2.4897 4.2920 13 6 5.1211 1.0515 6.2356 14 1 5.7753 0.2346 6.5022 15 6 4.6759 1.9233 7.2067 16 7 3.8798 2.9184 6.8819 17 14 5.2047 1.6917 8.9832 18 1 6.6843 1.7781 9.0746 19 1 4.5935 2.7523 9.8239 20 1 4.7561 0.3600 9.4636 21 6 5.1830 0.0625 3.9203 22 6 3.0390 -2.7373 0.5158 23 6 1.9499 -3.4536 0.9761 24 6 1.7392 -4.7480 0.5390 25 6 2.6227 -5.3294 -0.3512 26 6 3.7146 -4.6148 -0.8074 27 6 3.9228 -3.3189 -0.3737 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.4340 -1.8885 3.0610 36 1 4.9820 -1.8432 2.1832 37 1 2.7582 1.5154 2.5628 38 1 2.1640 -0.0682 3.1361 39 1 2.6766 2.0852 4.8206 40 1 2.7608 0.3734 5.3511 41 1 4.8027 3.2604 4.7537 42 1 3.5669 3.5319 7.5650 43 1 5.1371 -0.8736 4.4767 44 1 6.1983 0.2472 3.5693 45 1 1.2616 -3.0006 1.6742 46 1 0.8859 -5.3061 0.8951 47 1 2.4596 -6.3416 -0.6906 48 1 4.4046 -5.0688 -1.5032 49 1 4.7757 -2.7606 -0.7305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:28 Heat of formation + Delta-G solvation = -70.002069 kcal Electronic energy + Delta-G solvation = -28252.240536 eV Core-core repulsion = 24564.973820 eV Total energy + Delta-G solvation = -3687.266716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.87827 -38.37925 -37.55359 -34.77871 -33.21442 -32.06902 -31.34446 -30.87708 -29.82973 -28.02620 -27.15034 -26.80963 -24.46795 -22.83848 -22.63422 -21.46507 -20.63074 -19.71372 -19.41421 -17.19542 -16.91518 -16.75634 -15.63652 -15.04280 -14.84453 -14.81510 -14.71090 -14.51754 -13.98023 -13.88680 -13.53499 -13.44925 -13.00532 -12.90967 -12.52480 -12.35373 -12.30556 -12.14310 -12.08000 -11.60031 -11.58048 -11.19424 -11.18047 -11.10557 -11.01238 -10.98500 -10.76179 -10.67905 -10.42389 -10.39764 -10.09975 -9.67339 -9.31988 -9.09116 -8.97007 -8.78494 -8.52383 -7.97844 -7.47574 -6.15169 -4.23168 1.26405 1.35473 3.26569 3.31254 3.34291 3.67850 3.80355 4.33111 4.54674 4.85456 4.90268 4.95560 5.02802 5.10034 5.14841 5.16521 5.29028 5.37086 5.45569 5.47647 5.57232 5.63565 5.70836 5.88032 5.89267 5.93035 5.95425 5.97773 6.03271 6.06801 6.16330 6.24011 6.33145 6.38568 6.39817 6.45014 6.48324 6.56538 6.72015 6.81489 6.94196 7.03583 7.22590 7.46652 7.53106 7.59202 7.79189 7.86554 7.93228 8.24973 8.78641 9.45126 9.59014 10.91512 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.003525 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.148643 B = 7941.283250 C = 8787.531486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.084 3.916 3 C -0.173 4.173 4 O -0.358 6.358 5 C 0.138 3.862 6 H 0.074 0.926 7 C 0.060 3.940 8 N -0.525 5.525 9 C 0.052 3.948 10 C -0.147 4.147 11 C 0.252 3.748 12 O -0.579 6.579 13 C -0.536 4.536 14 H 0.059 0.941 15 C 0.072 3.928 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.059 3.941 22 C -0.106 4.106 23 C -0.092 4.092 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.112 4.112 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.376 0.624 42 H 0.266 0.734 43 H 0.044 0.956 44 H 0.068 0.932 45 H 0.127 0.873 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -10.818 -15.519 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.026 3.974 3 C -0.231 4.231 4 O -0.277 6.277 5 C 0.079 3.921 6 H 0.092 0.908 7 C -0.069 4.069 8 N -0.249 5.249 9 C -0.075 4.075 10 C -0.186 4.186 11 C 0.212 3.788 12 O -0.387 6.387 13 C -0.575 4.575 14 H 0.077 0.923 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.068 4.068 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.130 4.130 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.224 0.776 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.145 0.855 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.403 -10.779 -16.100 20.114 hybrid contribution -0.307 -0.310 1.860 1.911 sum -5.711 -11.089 -14.240 18.930 Atomic orbital electron populations 1.21849 0.94169 1.02166 1.02318 1.22025 0.94444 0.92724 0.88182 1.22323 1.02300 0.96385 1.02073 1.88048 1.36029 1.69086 1.34544 1.20971 0.85498 0.87570 0.98026 0.90758 1.22283 0.98373 0.91984 0.94227 1.63540 1.11686 1.14327 1.35313 1.22927 0.90001 0.98264 0.96272 1.23283 1.00804 1.01257 0.93247 1.19513 0.88250 0.81290 0.89756 1.86133 1.73537 1.16685 1.62326 1.21530 1.30272 1.13282 0.92406 0.92322 1.24984 0.94027 0.94789 0.99218 1.69741 1.33477 1.15856 1.34274 0.86567 0.79025 0.77797 0.84067 1.20091 1.21180 1.20239 1.22972 0.96005 0.98010 0.89846 1.20555 0.95740 0.97215 0.97184 1.21051 0.97287 0.93740 0.98973 1.21172 0.99535 0.95492 0.98126 1.21134 0.95257 0.99704 0.98103 1.21087 0.97993 0.94694 1.00480 1.21048 0.99072 0.95504 0.97381 0.91760 0.92457 0.91704 0.92952 0.91396 0.91779 0.92572 0.94351 0.90470 0.91984 0.92698 0.90820 0.93074 0.77556 0.92428 0.93772 0.91393 0.85526 0.86284 0.86434 0.86256 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.56 37.16 0.36 -1.21 16 2 C 0.08 1.02 3.12 -26.73 -0.08 0.94 16 3 C -0.17 -2.19 8.96 37.16 0.33 -1.85 16 4 O -0.36 -5.14 5.67 -35.23 -0.20 -5.34 16 5 C 0.14 1.92 2.36 -27.88 -0.07 1.86 16 6 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 7 C 0.06 0.99 4.47 -3.82 -0.02 0.97 16 8 N -0.52 -10.27 5.16 -231.24 -1.19 -11.46 16 9 C 0.05 1.06 5.51 -2.84 -0.02 1.05 16 10 C -0.15 -3.49 5.38 -24.91 -0.13 -3.62 16 11 C 0.25 6.39 0.87 -89.63 -0.08 6.31 16 12 O -0.58 -15.41 13.16 -35.23 -0.46 -15.88 16 13 C -0.54 -14.66 8.27 -34.44 -0.28 -14.94 16 14 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 15 C 0.07 1.94 5.29 -17.82 -0.09 1.85 16 16 N -0.89 -24.25 10.75 55.43 0.60 -23.66 16 17 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.06 1.31 5.86 -2.30 -0.01 1.29 16 22 C -0.11 -1.33 4.94 -104.62 -0.52 -1.85 16 23 C -0.09 -1.13 9.35 -39.58 -0.37 -1.50 16 24 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 27 C -0.11 -1.25 9.68 -39.59 -0.38 -1.64 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.61 7.79 -51.93 -0.40 0.20 16 32 H 0.07 0.95 7.03 -51.93 -0.37 0.59 16 33 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.66 7.96 -51.93 -0.41 0.25 16 36 H 0.08 1.18 8.07 -51.93 -0.42 0.77 16 37 H 0.06 1.27 6.38 -51.93 -0.33 0.94 16 38 H 0.05 1.07 5.83 -51.93 -0.30 0.77 16 39 H 0.07 1.86 7.54 -51.93 -0.39 1.47 16 40 H 0.05 1.26 8.03 -51.93 -0.42 0.84 16 41 H 0.38 10.07 7.56 45.56 0.34 10.42 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.04 0.96 7.70 -51.93 -0.40 0.56 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.13 1.60 7.64 -52.49 -0.40 1.20 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -28.34 385.41 -10.69 -39.03 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.65 Total: 12.91 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.56 Total: -17.35 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.60 Total: -35.12 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.66 Total: -21.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.34 -10.69 -39.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.972 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds