Wall clock time and date at job start Tue Mar 31 2020 14:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.42897 * 113.99495 * 149.99936 * 4 2 1 6 6 H 1.08998 * 109.47610 * 30.00051 * 5 4 2 7 7 C 1.53000 * 109.46933 * 150.00455 * 5 4 2 8 8 N 1.46907 * 109.46735 * 299.99422 * 7 5 4 9 9 C 1.47443 * 110.99647 * 69.88065 * 8 7 5 10 10 C 1.54316 * 107.23769 * 123.25480 * 9 8 7 11 11 C 1.55143 * 103.01815 * 22.27999 * 10 9 8 12 12 O 1.42902 * 110.99060 * 82.47639 * 11 10 9 13 13 C 1.50698 * 110.99223 * 206.25806 * 11 10 9 14 14 H 1.07995 * 120.00008 * 118.54857 * 13 11 10 15 15 C 1.37881 * 119.99737 * 298.54614 * 13 11 10 16 16 N 1.31517 * 119.99838 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99952 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47462 * 59.99645 * 17 15 13 19 19 H 1.48499 * 109.47172 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46885 * 299.99904 * 17 15 13 21 21 C 1.47849 * 110.99824 * 190.71486 * 8 7 5 22 22 C 1.50702 * 109.47365 * 270.00217 * 5 4 2 23 23 C 1.38238 * 119.99529 * 324.72658 * 22 5 4 24 24 C 1.38241 * 119.99863 * 179.78570 * 23 22 5 25 25 C 1.38236 * 119.99912 * 0.44673 * 24 23 22 26 26 C 1.38243 * 119.99653 * 359.80967 * 25 24 23 27 27 C 1.38229 * 120.00275 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.08993 * 109.47683 * 59.99656 * 7 5 4 36 36 H 1.09007 * 109.47085 * 180.02562 * 7 5 4 37 37 H 1.09003 * 109.88867 * 242.66071 * 9 8 7 38 38 H 1.09003 * 109.89146 * 3.84576 * 9 8 7 39 39 H 1.08994 * 110.70817 * 140.66080 * 10 9 8 40 40 H 1.09001 * 110.70522 * 263.90061 * 10 9 8 41 41 H 0.96695 * 113.99938 * 61.44862 * 12 11 10 42 42 H 0.97005 * 119.99500 * 180.02562 * 16 15 13 43 43 H 1.08995 * 110.37174 * 332.47183 * 21 8 7 44 44 H 1.08998 * 110.36892 * 94.81236 * 21 8 7 45 45 H 1.07996 * 120.00047 * 0.02562 * 23 22 5 46 46 H 1.07999 * 120.00304 * 180.27638 * 24 23 22 47 47 H 1.07995 * 120.00305 * 179.82645 * 25 24 23 48 48 H 1.07999 * 119.99454 * 180.02562 * 26 25 24 49 49 H 1.07997 * 119.99821 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2659 -1.3245 0.9887 6 1 3.8530 -0.7831 0.2469 7 6 4.0210 -1.3471 2.3192 8 7 4.2423 0.0301 2.7800 9 6 2.9753 0.6571 3.1988 10 6 3.1547 1.1189 4.6603 11 6 4.6950 1.2387 4.8023 12 8 5.1604 2.4897 4.2920 13 6 5.1211 1.0515 6.2356 14 1 5.7753 0.2346 6.5022 15 6 4.6759 1.9233 7.2067 16 7 3.8798 2.9184 6.8819 17 14 5.2047 1.6917 8.9832 18 1 6.6843 1.7781 9.0746 19 1 4.5935 2.7523 9.8239 20 1 4.7561 0.3600 9.4636 21 6 5.1830 0.0625 3.9203 22 6 3.0390 -2.7373 0.5158 23 6 1.9499 -3.4536 0.9761 24 6 1.7392 -4.7480 0.5390 25 6 2.6227 -5.3294 -0.3512 26 6 3.7146 -4.6148 -0.8074 27 6 3.9228 -3.3189 -0.3737 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.4340 -1.8885 3.0610 36 1 4.9820 -1.8432 2.1832 37 1 2.7582 1.5154 2.5628 38 1 2.1640 -0.0682 3.1361 39 1 2.6766 2.0852 4.8206 40 1 2.7608 0.3734 5.3511 41 1 4.8027 3.2604 4.7537 42 1 3.5669 3.5319 7.5650 43 1 5.1371 -0.8736 4.4767 44 1 6.1983 0.2472 3.5693 45 1 1.2616 -3.0006 1.6742 46 1 0.8859 -5.3061 0.8951 47 1 2.4596 -6.3416 -0.6906 48 1 4.4046 -5.0688 -1.5032 49 1 4.7757 -2.7606 -0.7305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:27 Heat of formation + Delta-G solvation = -86.807656 kcal Electronic energy + Delta-G solvation = -28252.969281 eV Core-core repulsion = 24564.973820 eV Total energy + Delta-G solvation = -3687.995461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95253 -39.79965 -38.76535 -36.50754 -34.40323 -34.16918 -32.33243 -31.70133 -31.36771 -29.85721 -28.42739 -27.96927 -26.26763 -24.12665 -23.47984 -22.54024 -21.64780 -21.33325 -21.28221 -19.01093 -18.04830 -17.82644 -16.95046 -16.85116 -16.46482 -15.98637 -15.90174 -15.68287 -15.53968 -15.12821 -14.76631 -14.40886 -14.30196 -14.17211 -14.04339 -13.57221 -13.51809 -13.44429 -13.32189 -13.08974 -13.03990 -12.83605 -12.74527 -12.50495 -12.42384 -12.26084 -12.22186 -12.08396 -11.89961 -11.84495 -11.61801 -11.31277 -11.06598 -10.62002 -10.37774 -10.02413 -9.78579 -9.65312 -9.11947 -8.20815 -6.37007 0.42888 0.53871 1.40307 1.41230 1.49055 2.37724 2.72377 2.86762 3.03202 3.19003 3.84547 3.95156 4.00829 4.07118 4.11912 4.18756 4.20967 4.23450 4.32084 4.35490 4.37798 4.45630 4.57064 4.58427 4.67173 4.70242 4.78686 4.81456 4.89724 4.94987 4.97214 4.99892 5.05502 5.11045 5.19620 5.21582 5.30789 5.37205 5.44124 5.54427 5.56489 5.59848 5.65133 5.70158 5.81593 6.00661 6.14137 6.24369 6.33198 6.45369 6.68476 7.34366 7.46271 8.84116 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.003525 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.148643 B = 7941.283250 C = 8787.531486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 C -0.169 4.169 4 O -0.376 6.376 5 C 0.148 3.852 6 H 0.074 0.926 7 C 0.061 3.939 8 N -0.523 5.523 9 C 0.072 3.928 10 C -0.138 4.138 11 C 0.236 3.764 12 O -0.586 6.586 13 C -0.565 4.565 14 H 0.053 0.947 15 C 0.031 3.969 16 N -0.910 5.910 17 Si 0.959 3.041 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.273 1.273 21 C 0.066 3.934 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.120 4.120 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.370 0.630 42 H 0.268 0.732 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.145 0.855 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 -12.548 -16.828 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.295 6.295 5 C 0.089 3.911 6 H 0.092 0.908 7 C -0.067 4.067 8 N -0.247 5.247 9 C -0.055 4.055 10 C -0.177 4.177 11 C 0.196 3.804 12 O -0.393 6.393 13 C -0.603 4.603 14 H 0.071 0.929 15 C -0.170 4.170 16 N -0.549 5.549 17 Si 0.784 3.216 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.198 1.198 21 C -0.061 4.061 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.138 4.138 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.219 0.781 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.132 0.868 46 H 0.154 0.846 47 H 0.162 0.838 48 H 0.162 0.838 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.567 -12.518 -17.424 22.165 hybrid contribution -0.266 0.201 2.226 2.251 sum -5.833 -12.317 -15.198 20.413 Atomic orbital electron populations 1.21828 0.92887 1.02473 1.02807 1.22158 0.95411 0.92130 0.87817 1.22282 1.01154 0.96914 1.02268 1.88004 1.36116 1.69430 1.35977 1.20772 0.85190 0.88861 0.96265 0.90801 1.22372 0.99331 0.89742 0.95291 1.63511 1.10801 1.16651 1.33772 1.22720 0.90671 0.98412 0.93741 1.23103 0.99719 0.99692 0.95195 1.19743 0.89192 0.81541 0.89893 1.86124 1.73791 1.17059 1.62366 1.21813 1.30926 1.13696 0.93856 0.92874 1.25693 0.93924 0.94469 1.02903 1.69834 1.33638 1.16088 1.35350 0.85609 0.78594 0.77898 0.79489 1.19854 1.20493 1.19801 1.22822 0.96369 0.96749 0.90189 1.20406 0.96721 0.96369 0.98491 1.21058 0.97373 0.94707 0.99448 1.21415 1.00356 0.94927 0.98153 1.21498 0.94588 1.00824 0.97157 1.21425 0.98362 0.94145 1.00379 1.21241 0.99096 0.96290 0.97155 0.89627 0.92227 0.92829 0.91974 0.93259 0.93414 0.90272 0.95354 0.89356 0.92136 0.91821 0.92888 0.94637 0.78147 0.92260 0.93607 0.91720 0.86753 0.84609 0.83795 0.83765 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.56 71.98 0.69 -2.17 16 2 C 0.08 1.93 3.12 30.60 0.10 2.02 16 3 C -0.17 -4.17 8.96 71.98 0.65 -3.52 16 4 O -0.38 -10.68 5.67 -148.98 -0.84 -11.52 16 5 C 0.15 4.03 2.36 29.85 0.07 4.10 16 6 H 0.07 2.00 7.53 -2.39 -0.02 1.98 16 7 C 0.06 1.98 4.47 86.30 0.39 2.37 16 8 N -0.52 -20.61 5.16 -885.52 -4.57 -25.18 16 9 C 0.07 2.96 5.51 86.65 0.48 3.44 16 10 C -0.14 -6.76 5.38 31.78 0.17 -6.59 16 11 C 0.24 12.25 0.87 -10.15 -0.01 12.24 16 12 O -0.59 -31.97 13.16 -148.98 -1.96 -33.93 16 13 C -0.56 -31.40 8.27 25.60 0.21 -31.19 16 14 H 0.05 2.93 7.79 -2.91 -0.02 2.91 16 15 C 0.03 1.68 5.29 84.66 0.45 2.13 16 16 N -0.91 -50.09 10.75 21.45 0.23 -49.86 16 17 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.07 2.98 5.86 86.77 0.51 3.49 16 22 C -0.12 -2.85 4.94 -19.87 -0.10 -2.95 16 23 C -0.11 -2.54 9.35 22.27 0.21 -2.33 16 24 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 25 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 26 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 27 C -0.12 -2.44 9.68 22.27 0.22 -2.22 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.35 7.79 -2.39 -0.02 1.33 16 32 H 0.05 1.39 7.03 -2.39 -0.02 1.37 16 33 H 0.05 1.32 7.96 -2.39 -0.02 1.30 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.03 0.98 7.96 -2.39 -0.02 0.96 16 36 H 0.09 2.65 8.07 -2.38 -0.02 2.63 16 37 H 0.06 2.52 6.38 -2.39 -0.02 2.51 16 38 H 0.06 2.52 5.83 -2.39 -0.01 2.50 16 39 H 0.05 2.78 7.54 -2.39 -0.02 2.76 16 40 H 0.03 1.80 8.03 -2.39 -0.02 1.78 16 41 H 0.37 20.52 7.56 -74.06 -0.56 19.96 16 42 H 0.27 14.07 8.31 -92.70 -0.77 13.30 16 43 H 0.05 2.02 7.70 -2.39 -0.02 2.00 16 44 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 45 H 0.11 2.91 7.64 -2.91 -0.02 2.88 16 46 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 47 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 48 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 49 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -60.91 385.41 -0.07 -60.98 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: 0.36 Total: 41.58 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 4.69 Total: -27.21 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -4.34 Total: -75.04 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -2.80 Total: -45.45 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -60.91 -0.07 -60.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.825 kcal (2) G-P(sol) polarization free energy of solvation -60.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds