Wall clock time and date at job start Tue Mar 31 2020 12:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 C 1.52997 * 109.47086 * 240.00167 * 2 1 3 5 5 C 1.50705 * 109.47014 * 59.99869 * 4 2 1 6 6 H 1.07993 * 120.00212 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99695 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99600 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00107 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47078 * 89.99861 * 9 7 5 11 11 H 1.48496 * 109.46821 * 209.99672 * 9 7 5 12 12 H 1.48499 * 109.46991 * 330.00111 * 9 7 5 13 13 C 1.53005 * 109.47059 * 119.99891 * 2 1 3 14 14 N 1.46891 * 109.47420 * 299.99992 * 13 2 1 15 15 C 1.46896 * 111.00332 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47394 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47321 * 60.00171 * 16 15 14 18 18 C 1.50697 * 109.46968 * 300.00124 * 16 15 14 19 19 O 1.20827 * 119.99969 * 120.00711 * 18 16 15 20 20 O 1.34233 * 120.00061 * 299.99979 * 18 16 15 21 21 C 1.50706 * 109.46946 * 180.02562 * 16 15 14 22 22 C 1.38237 * 119.99744 * 180.02562 * 21 16 15 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 16 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 0.02562 * 21 16 15 27 27 H 1.09006 * 109.47020 * 299.99548 * 1 2 3 28 28 H 1.09001 * 109.47134 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47232 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47261 * 300.00103 * 3 2 1 32 32 H 1.09006 * 109.46801 * 60.00318 * 3 2 1 33 33 H 1.09001 * 109.46824 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46985 * 300.00049 * 4 2 1 35 35 H 0.97000 * 119.99545 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46638 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.46877 * 60.00470 * 13 2 1 38 38 H 1.00902 * 111.00438 * 303.95758 * 14 13 2 39 39 H 1.09001 * 109.46996 * 59.99698 * 15 14 13 40 40 H 1.09000 * 109.47052 * 300.00698 * 15 14 13 41 41 H 1.08995 * 109.47023 * 180.02562 * 17 16 15 42 42 H 1.09001 * 109.46677 * 299.99918 * 17 16 15 43 43 H 1.09000 * 109.46795 * 59.99709 * 17 16 15 44 44 H 0.96702 * 117.00104 * 180.02562 * 20 18 16 45 45 H 1.08005 * 120.00088 * 359.97438 * 22 21 16 46 46 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 49 49 H 1.07998 * 119.99975 * 0.02562 * 26 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0107 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 1.4332 0.1388 -4.8057 9 14 2.9452 -2.0003 -3.9034 10 1 2.0865 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1559 12 1 3.8651 -2.0897 -2.7411 13 6 2.0400 -0.7213 1.2493 14 7 1.5504 -0.0288 2.4487 15 6 2.0209 -0.6953 3.6703 16 6 1.4914 0.0526 4.8955 17 6 -0.0384 0.0523 4.8714 18 6 1.9939 1.4731 4.8729 19 8 1.2090 2.3911 4.8409 20 8 3.3135 1.7186 4.8885 21 6 1.9746 -0.6309 6.1488 22 6 1.6206 -0.1320 7.3884 23 6 2.0643 -0.7586 8.5380 24 6 2.8611 -1.8846 8.4479 25 6 3.2191 -2.3806 7.2083 26 6 2.7719 -1.7565 6.0587 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 1.6675 -0.1926 -5.6867 36 1 3.1301 -0.7216 1.2490 37 1 1.6767 -1.7490 1.2492 38 1 1.8198 0.9435 2.4402 39 1 3.1108 -0.6955 3.6873 40 1 1.6572 -1.7226 3.6868 41 1 -0.4156 0.5854 5.7440 42 1 -0.3876 0.5469 3.9650 43 1 -0.4019 -0.9752 4.8877 44 1 3.5878 2.6457 4.8732 45 1 0.9980 0.7477 7.4588 46 1 1.7881 -0.3686 9.5065 47 1 3.2074 -2.3743 9.3460 48 1 3.8453 -3.2577 7.1378 49 1 3.0488 -2.1460 5.0902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593333602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:51 Heat of formation + Delta-G solvation = -80.705570 kcal Electronic energy + Delta-G solvation = -27589.673455 eV Core-core repulsion = 23901.942601 eV Total energy + Delta-G solvation = -3687.730855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17172 -39.33329 -37.88461 -36.42303 -35.84737 -33.28480 -31.99326 -31.28038 -29.66949 -27.79550 -26.65223 -26.36660 -25.23911 -24.26043 -22.73977 -22.38859 -21.67138 -19.96351 -18.20715 -17.97826 -17.49872 -16.82721 -16.61287 -16.14512 -15.40332 -15.11316 -14.93484 -14.70803 -14.15319 -14.04601 -13.93166 -13.67292 -13.46074 -13.07376 -12.80975 -12.68171 -12.46350 -12.38174 -12.19593 -12.06281 -11.90350 -11.71339 -11.69320 -11.29747 -11.09435 -10.98452 -10.94878 -10.84470 -10.58746 -10.49941 -10.36560 -9.79644 -9.69050 -9.30538 -9.22917 -9.06575 -8.90718 -8.49374 -8.27002 -5.99422 -3.95618 0.97507 1.08949 2.00830 2.80635 3.32184 3.39879 3.42786 3.48590 3.95442 4.36725 4.48444 4.57288 4.62703 4.69400 4.75434 4.83797 5.10485 5.16303 5.26232 5.33412 5.38049 5.50420 5.58446 5.60009 5.66870 5.70297 5.75628 5.79095 5.86291 6.09942 6.12379 6.18237 6.20835 6.22199 6.26235 6.33362 6.40046 6.59644 6.65931 6.67279 6.80021 7.04283 7.10162 7.16678 7.24360 7.32028 7.40251 7.51336 7.70913 7.85576 8.60410 9.06726 9.63543 11.13721 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.002877 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.956698 B = 9731.677567 C =10376.903751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.068 3.932 14 N -0.683 5.683 15 C 0.065 3.935 16 C -0.004 4.004 17 C -0.121 4.121 18 C 0.488 3.512 19 O -0.503 6.503 20 O -0.513 6.513 21 C -0.072 4.072 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.107 4.107 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.011 0.989 35 H 0.261 0.739 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.337 0.663 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.409 0.591 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -2.595 27.503 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.060 4.060 14 N -0.315 5.315 15 C -0.064 4.064 16 C -0.006 4.006 17 C -0.179 4.179 18 C 0.329 3.671 19 O -0.389 6.389 20 O -0.324 6.324 21 C -0.073 4.073 22 C -0.130 4.130 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.125 4.125 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.156 0.844 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.267 0.733 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.419 -3.075 27.296 27.575 hybrid contribution 1.797 0.051 -0.243 1.814 sum 4.216 -3.024 27.054 27.547 Atomic orbital electron populations 1.21619 0.94418 1.00703 1.00797 1.20420 0.96298 0.94985 0.93169 1.21785 0.99558 0.96520 1.00956 1.19627 0.95798 0.95467 0.93284 1.21134 1.31427 1.13233 0.88666 0.90417 1.25023 0.95822 0.96748 0.96032 1.69912 1.46159 1.40616 0.97824 0.86843 0.81277 0.84056 0.77443 1.20438 1.21607 1.19200 1.22158 0.96458 0.98208 0.89225 1.60586 1.63583 1.06303 1.01052 1.22112 0.97712 0.98657 0.87967 1.19495 0.98532 0.87948 0.94618 1.21696 0.89298 1.02948 1.03911 1.23278 0.79988 0.92238 0.71562 1.90734 1.56824 1.46496 1.44871 1.84564 1.26280 1.36207 1.85380 1.19418 0.98556 0.96367 0.92915 1.21015 0.99899 1.00120 0.91960 1.21104 0.98168 0.96076 0.98189 1.21196 0.98273 0.96543 0.97748 1.21175 0.99890 1.00036 0.92386 1.21187 0.96815 0.95222 0.99243 0.93642 0.92105 0.94138 0.94159 0.91038 0.94788 0.96954 0.97104 0.92899 0.95628 0.91208 0.84382 0.93768 0.89156 0.92345 0.89510 0.91130 0.73272 0.86152 0.85937 0.86029 0.85775 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.05 -0.92 0.60 -154.50 -0.09 -1.01 16 3 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 4 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 5 C -0.51 -13.93 8.20 -34.44 -0.28 -14.21 16 6 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.77 13.96 55.43 0.77 -26.99 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.07 1.07 4.65 -3.83 -0.02 1.05 16 14 N -0.68 -9.26 4.93 -113.78 -0.56 -9.82 16 15 C 0.07 0.73 3.24 -3.83 -0.01 0.71 16 16 C 0.00 -0.05 0.62 -156.81 -0.10 -0.14 16 17 C -0.12 -1.32 7.42 37.16 0.28 -1.04 16 18 C 0.49 5.74 5.37 36.00 0.19 5.94 16 19 O -0.50 -7.16 16.74 -18.75 -0.31 -7.47 16 20 O -0.51 -5.05 13.24 -39.27 -0.52 -5.57 16 21 C -0.07 -0.70 4.69 -104.62 -0.49 -1.20 16 22 C -0.11 -1.04 8.82 -39.58 -0.35 -1.38 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 26 C -0.11 -0.96 8.98 -39.58 -0.36 -1.32 16 27 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 28 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 32 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 33 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 34 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.34 4.78 5.65 -39.29 -0.22 4.56 16 39 H 0.04 0.49 7.48 -51.93 -0.39 0.10 16 40 H 0.09 0.93 7.52 -51.93 -0.39 0.54 16 41 H 0.06 0.61 7.35 -51.93 -0.38 0.22 16 42 H 0.09 1.09 7.56 -51.93 -0.39 0.70 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.41 2.40 9.10 45.56 0.41 2.82 16 45 H 0.12 1.08 7.58 -52.48 -0.40 0.68 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.13 1.06 5.90 -52.49 -0.31 0.75 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -32.20 383.79 -8.64 -40.84 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.12 Total: 5.30 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.01 Total: -19.07 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.21 Total: -36.82 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.83 Total: -13.04 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.20 -8.64 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593333602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.864 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds