Wall clock time and date at job start Tue Mar 31 2020 12:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 C 1.52997 * 109.47086 * 240.00167 * 2 1 3 5 5 C 1.50705 * 109.47014 * 59.99869 * 4 2 1 6 6 H 1.07993 * 120.00212 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99695 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99600 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00107 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47078 * 89.99861 * 9 7 5 11 11 H 1.48496 * 109.46821 * 209.99672 * 9 7 5 12 12 H 1.48499 * 109.46991 * 330.00111 * 9 7 5 13 13 C 1.53005 * 109.47059 * 119.99891 * 2 1 3 14 14 N 1.46891 * 109.47420 * 299.99992 * 13 2 1 15 15 C 1.46896 * 111.00332 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47394 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47321 * 60.00171 * 16 15 14 18 18 C 1.50697 * 109.46968 * 300.00124 * 16 15 14 19 19 O 1.20827 * 119.99969 * 120.00711 * 18 16 15 20 20 O 1.34233 * 120.00061 * 299.99979 * 18 16 15 21 21 C 1.50706 * 109.46946 * 180.02562 * 16 15 14 22 22 C 1.38237 * 119.99744 * 180.02562 * 21 16 15 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 16 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 0.02562 * 21 16 15 27 27 H 1.09006 * 109.47020 * 299.99548 * 1 2 3 28 28 H 1.09001 * 109.47134 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47232 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47261 * 300.00103 * 3 2 1 32 32 H 1.09006 * 109.46801 * 60.00318 * 3 2 1 33 33 H 1.09001 * 109.46824 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46985 * 300.00049 * 4 2 1 35 35 H 0.97000 * 119.99545 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46638 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.46877 * 60.00470 * 13 2 1 38 38 H 1.00902 * 111.00438 * 303.95758 * 14 13 2 39 39 H 1.09001 * 109.46996 * 59.99698 * 15 14 13 40 40 H 1.09000 * 109.47052 * 300.00698 * 15 14 13 41 41 H 1.08995 * 109.47023 * 180.02562 * 17 16 15 42 42 H 1.09001 * 109.46677 * 299.99918 * 17 16 15 43 43 H 1.09000 * 109.46795 * 59.99709 * 17 16 15 44 44 H 0.96702 * 117.00104 * 180.02562 * 20 18 16 45 45 H 1.08005 * 120.00088 * 359.97438 * 22 21 16 46 46 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 49 49 H 1.07998 * 119.99975 * 0.02562 * 26 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0107 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 1.4332 0.1388 -4.8057 9 14 2.9452 -2.0003 -3.9034 10 1 2.0865 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1559 12 1 3.8651 -2.0897 -2.7411 13 6 2.0400 -0.7213 1.2493 14 7 1.5504 -0.0288 2.4487 15 6 2.0209 -0.6953 3.6703 16 6 1.4914 0.0526 4.8955 17 6 -0.0384 0.0523 4.8714 18 6 1.9939 1.4731 4.8729 19 8 1.2090 2.3911 4.8409 20 8 3.3135 1.7186 4.8885 21 6 1.9746 -0.6309 6.1488 22 6 1.6206 -0.1320 7.3884 23 6 2.0643 -0.7586 8.5380 24 6 2.8611 -1.8846 8.4479 25 6 3.2191 -2.3806 7.2083 26 6 2.7719 -1.7565 6.0587 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 1.6675 -0.1926 -5.6867 36 1 3.1301 -0.7216 1.2490 37 1 1.6767 -1.7490 1.2492 38 1 1.8198 0.9435 2.4402 39 1 3.1108 -0.6955 3.6873 40 1 1.6572 -1.7226 3.6868 41 1 -0.4156 0.5854 5.7440 42 1 -0.3876 0.5469 3.9650 43 1 -0.4019 -0.9752 4.8877 44 1 3.5878 2.6457 4.8732 45 1 0.9980 0.7477 7.4588 46 1 1.7881 -0.3686 9.5065 47 1 3.2074 -2.3743 9.3460 48 1 3.8453 -3.2577 7.1378 49 1 3.0488 -2.1460 5.0902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593333602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:50 Heat of formation + Delta-G solvation = -100.038445 kcal Electronic energy + Delta-G solvation = -27590.511792 eV Core-core repulsion = 23901.942601 eV Total energy + Delta-G solvation = -3688.569191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.00709 -40.03599 -39.23830 -37.30188 -36.89148 -34.80531 -33.65138 -31.89918 -30.44580 -29.61655 -27.95737 -27.70219 -26.36073 -25.34503 -23.88754 -23.25895 -22.76885 -20.77405 -19.51660 -19.02803 -18.86187 -18.26487 -17.46205 -17.11409 -16.38086 -16.30988 -15.91753 -15.64447 -15.59032 -15.22659 -15.06788 -14.75033 -14.46300 -14.29726 -14.17617 -13.84997 -13.69502 -13.50158 -13.32120 -13.09700 -12.91040 -12.77033 -12.75708 -12.57932 -12.57283 -12.35909 -12.24447 -12.08162 -11.96842 -11.77154 -11.67267 -11.45078 -11.35904 -10.99159 -10.81579 -10.68882 -9.83220 -9.69548 -9.34351 -8.20443 -6.21012 0.35180 0.48857 1.12348 1.37546 1.38928 1.50038 2.04926 2.40875 2.86663 3.01137 3.14696 3.59710 3.72285 3.80692 4.07146 4.10983 4.14299 4.18403 4.28600 4.30744 4.34380 4.58924 4.59749 4.65557 4.69005 4.75898 4.80368 4.88666 4.92568 4.95892 5.01968 5.05474 5.08348 5.13949 5.17397 5.32581 5.35530 5.45757 5.51381 5.54349 5.55595 5.60880 5.61784 5.62969 5.74495 5.81557 6.02478 6.08276 6.31041 6.43252 6.86645 6.92455 7.41403 8.95975 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.002877 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.956698 B = 9731.677567 C =10376.903751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.048 4.048 3 C -0.124 4.124 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.041 0.959 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.246 1.246 13 C 0.080 3.920 14 N -0.685 5.685 15 C 0.069 3.931 16 C 0.001 3.999 17 C -0.118 4.118 18 C 0.490 3.510 19 O -0.535 6.535 20 O -0.511 6.511 21 C -0.083 4.083 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.117 4.117 27 H 0.062 0.938 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.333 0.667 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.425 0.575 45 H 0.115 0.885 46 H 0.140 0.860 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.040 -4.803 30.241 31.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.049 4.049 3 C -0.181 4.181 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.059 0.941 7 C -0.197 4.197 8 N -0.599 5.599 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.170 1.170 13 C -0.049 4.049 14 N -0.317 5.317 15 C -0.060 4.060 16 C -0.001 4.001 17 C -0.175 4.175 18 C 0.333 3.667 19 O -0.424 6.424 20 O -0.324 6.324 21 C -0.084 4.084 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.135 4.135 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.152 0.848 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.286 0.714 45 H 0.133 0.867 46 H 0.158 0.842 47 H 0.163 0.837 48 H 0.162 0.838 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.117 -5.282 30.067 30.804 hybrid contribution 1.248 0.830 -1.013 1.809 sum 5.365 -4.452 29.054 29.878 Atomic orbital electron populations 1.21511 0.94675 1.00587 0.99852 1.20353 0.96049 0.95064 0.93402 1.21685 0.99813 0.96334 1.00277 1.19589 0.95722 0.95519 0.93161 1.21435 1.30045 1.12098 0.90597 0.94051 1.25963 0.97660 1.00354 0.95715 1.70077 1.48396 1.42919 0.98467 0.85759 0.79649 0.79859 0.77948 1.19519 1.21677 1.16978 1.21905 0.96670 0.98073 0.88208 1.60521 1.63809 1.06066 1.01297 1.22156 0.98123 0.99011 0.86735 1.19426 0.98162 0.87403 0.95082 1.21644 0.89778 1.03260 1.02856 1.23522 0.80192 0.92417 0.70605 1.90723 1.57643 1.47507 1.46509 1.84528 1.25248 1.37817 1.84792 1.19363 0.99578 0.97012 0.92432 1.21097 1.00430 1.00394 0.92467 1.21375 0.97905 0.96171 0.98559 1.21534 0.97525 0.96179 0.98644 1.21480 0.99742 1.00502 0.92171 1.21344 0.96868 0.95111 1.00133 0.91941 0.95579 0.93781 0.93564 0.94524 0.92630 0.96696 0.96572 0.92944 0.94977 0.90339 0.84822 0.93078 0.87859 0.92423 0.91447 0.90125 0.71406 0.86673 0.84172 0.83703 0.83774 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.14 8.06 71.98 0.58 -3.56 16 2 C -0.05 -1.79 0.60 -52.18 -0.03 -1.82 16 3 C -0.12 -4.58 7.89 71.98 0.57 -4.01 16 4 C 0.00 -0.09 3.11 29.85 0.09 0.00 16 5 C -0.50 -28.32 8.20 25.60 0.21 -28.11 16 6 H 0.04 2.57 5.92 -2.91 -0.02 2.56 16 7 C 0.00 -0.09 5.47 84.66 0.46 0.38 16 8 N -0.96 -60.52 13.96 21.45 0.30 -60.22 16 9 Si 0.94 44.41 27.47 68.60 1.88 46.29 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 13 C 0.08 2.31 4.65 86.31 0.40 2.72 16 14 N -0.69 -17.09 4.93 -513.90 -2.53 -19.62 16 15 C 0.07 1.36 3.24 86.30 0.28 1.64 16 16 C 0.00 0.02 0.62 -53.67 -0.03 -0.02 16 17 C -0.12 -2.45 7.42 71.98 0.53 -1.92 16 18 C 0.49 10.97 5.37 71.23 0.38 11.35 16 19 O -0.53 -15.03 16.74 21.96 0.37 -14.66 16 20 O -0.51 -9.18 13.24 -51.44 -0.68 -9.86 16 21 C -0.08 -1.47 4.69 -19.86 -0.09 -1.57 16 22 C -0.13 -2.14 8.82 22.27 0.20 -1.94 16 23 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 24 C -0.12 -1.45 10.05 22.27 0.22 -1.22 16 25 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 26 C -0.12 -1.80 8.98 22.27 0.20 -1.60 16 27 H 0.06 2.13 7.60 -2.38 -0.02 2.11 16 28 H 0.03 1.14 6.62 -2.39 -0.02 1.12 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16 32 H 0.05 1.79 6.57 -2.38 -0.02 1.77 16 33 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 34 H 0.02 0.71 7.57 -2.39 -0.02 0.70 16 35 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.33 8.82 5.65 -89.69 -0.51 8.32 16 39 H 0.05 0.97 7.48 -2.39 -0.02 0.95 16 40 H 0.10 1.80 7.52 -2.39 -0.02 1.79 16 41 H 0.06 1.18 7.35 -2.39 -0.02 1.16 16 42 H 0.07 1.66 7.56 -2.39 -0.02 1.64 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.42 4.34 9.10 -74.06 -0.67 3.67 16 45 H 0.12 2.00 7.58 -2.91 -0.02 1.98 16 46 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 47 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 48 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 49 H 0.14 1.83 5.90 -2.91 -0.02 1.81 16 Total: -1.00 -70.79 383.79 3.48 -67.32 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -0.28 Total: 23.20 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 4.42 Total: -32.45 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -2.23 Total: -79.84 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.31 Total: -24.52 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -70.79 3.48 -67.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593333602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.720 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds