Wall clock time and date at job start Tue Mar 31 2020 13:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46870 * 2 1 4 4 O 1.42898 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00269 * 179.97438 * 4 3 2 6 6 C 1.38757 * 120.05315 * 0.02562 * 5 4 3 7 7 C 1.38123 * 119.94415 * 179.97438 * 6 5 4 8 8 C 1.38285 * 120.05269 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.94344 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.46576 * 271.21871 * 9 8 7 11 11 C 1.47446 * 111.00302 * 74.00490 * 10 9 8 12 12 C 1.54317 * 107.23346 * 236.74014 * 11 10 9 13 13 C 1.55140 * 103.17817 * 337.62745 * 12 11 10 14 14 O 1.42899 * 110.98837 * 277.65109 * 13 12 11 15 15 C 1.50701 * 110.98794 * 153.82977 * 13 12 11 16 16 H 1.08000 * 119.99937 * 241.45174 * 15 13 12 17 17 C 1.37876 * 120.00091 * 61.45863 * 15 13 12 18 18 N 1.31511 * 119.99823 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99998 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47098 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46710 * 119.99916 * 19 17 15 22 22 H 1.48499 * 109.47114 * 239.99760 * 19 17 15 23 23 C 1.47849 * 111.00267 * 313.16303 * 10 9 8 24 24 C 1.38244 * 120.11700 * 0.29232 * 8 7 6 25 25 C 1.50697 * 119.97676 * 179.73070 * 24 8 7 26 26 C 1.38176 * 120.05381 * 359.45870 * 24 8 7 27 27 H 1.08999 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46864 * 299.99620 * 1 2 3 29 29 H 1.09000 * 109.47440 * 60.00086 * 1 2 3 30 30 H 1.09003 * 109.46864 * 240.00380 * 2 1 3 31 31 H 1.09000 * 109.47440 * 119.99914 * 2 1 3 32 32 H 1.09003 * 109.47067 * 60.00504 * 3 2 1 33 33 H 1.09000 * 109.47019 * 300.00172 * 3 2 1 34 34 H 1.07999 * 120.02775 * 359.94891 * 6 5 4 35 35 H 1.07992 * 119.97027 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47601 * 151.22154 * 9 8 7 37 37 H 1.08996 * 109.47384 * 31.21279 * 9 8 7 38 38 H 1.09002 * 109.88997 * 117.33340 * 11 10 9 39 39 H 1.09000 * 109.88446 * 356.14994 * 11 10 9 40 40 H 1.09003 * 110.70283 * 96.09805 * 12 11 10 41 41 H 1.08998 * 110.70714 * 219.15678 * 12 11 10 42 42 H 0.96693 * 113.99687 * 298.54043 * 14 13 12 43 43 H 0.97002 * 120.00054 * 180.02562 * 18 17 15 44 44 H 1.09007 * 110.36778 * 265.19494 * 23 10 9 45 45 H 1.08998 * 110.37268 * 27.42123 * 23 10 9 46 46 H 1.08995 * 109.47233 * 88.16694 * 25 24 8 47 47 H 1.08999 * 109.47275 * 208.17074 * 25 24 8 48 48 H 1.09002 * 109.46626 * 328.16635 * 25 24 8 49 49 H 1.07992 * 120.02823 * 180.24515 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0859 2.6535 -0.0012 6 6 3.3313 3.8179 -0.0007 7 6 3.9607 5.0474 -0.0008 8 6 5.3417 5.1184 -0.0009 9 6 6.0259 6.4612 -0.0004 10 7 6.2218 6.9113 -1.3850 11 6 4.9488 7.3564 -1.9811 12 6 4.7253 6.5206 -3.2589 13 6 6.1564 6.0480 -3.6271 14 8 6.8613 7.0622 -4.3458 15 6 6.1149 4.7624 -4.4124 16 1 6.5848 3.8735 -4.0183 17 6 5.4772 4.7212 -5.6342 18 7 4.9047 5.8036 -6.1139 19 14 5.4264 3.1279 -6.6079 20 1 6.1382 2.0645 -5.8546 21 1 4.0138 2.7225 -6.8203 22 1 6.0864 3.3301 -7.9228 23 6 6.7791 5.8267 -2.2209 24 6 6.0958 3.9598 -0.0070 25 6 7.6006 4.0409 -0.0131 26 6 5.4710 2.7274 -0.0017 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8901 33 1 1.6766 1.9564 -0.8900 34 1 2.2527 3.7629 -0.0007 35 1 3.3738 5.9539 0.0000 36 1 6.9934 6.3759 0.4942 37 1 5.4078 7.1837 0.5324 38 1 5.0085 8.4146 -2.2358 39 1 4.1317 7.1873 -1.2797 40 1 4.0787 5.6675 -3.0532 41 1 4.3065 7.1370 -4.0543 42 1 6.4509 7.3056 -5.1867 43 1 4.4557 5.7745 -6.9733 44 1 7.8652 5.9059 -2.2706 45 1 6.4880 4.8541 -1.8242 46 1 7.9660 4.0907 1.0125 47 1 8.0101 3.1571 -0.5022 48 1 7.9141 4.9337 -0.5543 49 1 6.0606 1.8226 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597157438.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:06 Heat of formation + Delta-G solvation = -61.107795 kcal Electronic energy + Delta-G solvation = -28455.443644 eV Core-core repulsion = 24768.562612 eV Total energy + Delta-G solvation = -3686.881031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.39227 -38.95274 -37.15209 -34.74566 -33.96390 -32.52662 -32.07465 -31.04390 -28.88521 -28.05373 -27.15501 -26.28660 -25.14325 -23.81299 -22.34438 -21.48150 -20.68253 -19.71724 -19.26548 -17.61417 -17.02153 -16.32453 -16.19971 -15.48182 -14.96604 -14.83132 -14.78663 -14.28000 -14.20416 -13.96919 -13.61673 -13.31381 -13.08407 -12.92040 -12.64180 -12.33628 -12.30961 -12.08935 -11.95973 -11.91032 -11.62759 -11.30123 -11.24484 -11.18441 -11.11179 -10.85362 -10.74799 -10.64855 -10.55159 -10.49019 -10.32848 -10.16237 -9.74927 -9.08214 -8.54182 -8.51307 -8.02405 -7.84291 -7.49970 -6.15728 -4.22411 1.57172 1.67572 3.21953 3.23146 3.31657 3.36985 3.94954 4.34064 4.67976 4.68966 4.84074 4.98103 5.00117 5.03093 5.12042 5.18289 5.22196 5.26689 5.38028 5.45489 5.50489 5.57132 5.70226 5.76370 5.79544 5.84230 5.84805 5.92322 5.97753 6.04486 6.11474 6.15989 6.24512 6.30107 6.36180 6.53182 6.57430 6.63440 6.76824 6.88167 6.97411 7.01086 7.16107 7.51019 7.56457 7.58773 7.69505 7.82256 7.88865 8.24840 8.79958 9.45708 9.58066 10.91330 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.005181 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.382455 B = 5403.377865 C = 7045.135509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.319 6.319 5 C 0.130 3.870 6 C -0.212 4.212 7 C -0.064 4.064 8 C -0.145 4.145 9 C 0.087 3.913 10 N -0.517 5.517 11 C 0.040 3.960 12 C -0.140 4.140 13 C 0.252 3.748 14 O -0.581 6.581 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 C 0.042 3.958 24 C -0.029 4.029 25 C -0.130 4.130 26 C -0.152 4.152 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.375 0.625 43 H 0.264 0.736 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 -5.666 13.878 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.233 6.233 5 C 0.085 3.915 6 C -0.231 4.231 7 C -0.083 4.083 8 C -0.147 4.147 9 C -0.041 4.041 10 N -0.238 5.238 11 C -0.088 4.088 12 C -0.179 4.179 13 C 0.212 3.788 14 O -0.388 6.388 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.085 4.085 24 C -0.030 4.030 25 C -0.186 4.186 26 C -0.171 4.171 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.224 0.776 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.934 -5.385 14.267 16.028 hybrid contribution -1.524 -1.407 -1.230 2.411 sum -6.458 -6.792 13.037 16.056 Atomic orbital electron populations 1.21690 0.94379 1.02377 1.02242 1.21478 0.95936 0.95059 1.03624 1.22826 0.78896 0.98528 1.01388 1.86010 1.20958 1.27381 1.88913 1.18870 0.92161 0.83796 0.96635 1.21096 0.99531 0.92465 1.10029 1.20778 0.93914 0.96720 0.96882 1.20380 0.93774 0.96613 1.03973 1.21381 0.99447 0.90587 0.92663 1.63986 1.24601 1.34612 1.00647 1.22892 0.89551 0.99752 0.96590 1.23196 1.01128 0.98421 0.95177 1.19630 0.85894 0.86181 0.87078 1.86142 1.55495 1.59520 1.37681 1.21557 1.35074 0.96161 1.03876 0.92236 1.24960 0.94210 0.96552 0.97273 1.69750 1.36535 1.27717 1.19569 0.86505 0.77717 0.83671 0.79968 1.19630 1.21024 1.20782 1.23557 0.98904 0.92877 0.93169 1.19491 0.96008 0.91582 0.95882 1.21169 0.90820 1.04348 1.02247 1.20206 0.91212 0.97981 1.07704 0.91835 0.92462 0.92253 0.90768 0.90994 0.92301 0.91967 0.86062 0.86192 0.90317 0.91012 0.91869 0.94376 0.92843 0.90814 0.77566 0.92587 0.91581 0.91002 0.91329 0.91322 0.89488 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.17 6.30 -26.73 -0.17 -1.34 16 3 C 0.06 0.69 4.74 37.16 0.18 0.86 16 4 O -0.32 -4.81 10.14 -19.43 -0.20 -5.01 16 5 C 0.13 2.12 6.69 -39.21 -0.26 1.85 16 6 C -0.21 -3.27 9.04 -39.43 -0.36 -3.63 16 7 C -0.06 -1.02 8.81 -39.61 -0.35 -1.36 16 8 C -0.15 -2.38 4.11 -104.60 -0.43 -2.81 16 9 C 0.09 1.39 5.16 -4.97 -0.03 1.37 16 10 N -0.52 -10.09 5.41 -232.37 -1.26 -11.35 16 11 C 0.04 0.79 6.41 -2.83 -0.02 0.77 16 12 C -0.14 -3.31 5.36 -24.91 -0.13 -3.44 16 13 C 0.25 6.39 0.88 -89.38 -0.08 6.31 16 14 O -0.58 -15.53 13.16 -35.23 -0.46 -15.99 16 15 C -0.53 -14.50 8.29 -34.44 -0.29 -14.79 16 16 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 17 C 0.07 1.95 5.29 -17.82 -0.09 1.85 16 18 N -0.90 -24.38 10.74 55.43 0.60 -23.78 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 C 0.04 0.91 4.02 -2.04 -0.01 0.90 16 24 C -0.03 -0.46 4.37 -104.64 -0.46 -0.92 16 25 C -0.13 -1.82 8.41 36.00 0.30 -1.52 16 26 C -0.15 -2.48 9.64 -39.43 -0.38 -2.86 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 33 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 34 H 0.12 1.60 6.30 -52.49 -0.33 1.27 16 35 H 0.12 1.72 6.82 -52.49 -0.36 1.37 16 36 H 0.08 1.15 6.67 -51.93 -0.35 0.80 16 37 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.04 0.67 5.38 -51.93 -0.28 0.39 16 40 H 0.05 1.32 8.03 -51.93 -0.42 0.91 16 41 H 0.07 1.85 7.53 -51.93 -0.39 1.46 16 42 H 0.38 10.10 7.56 45.56 0.34 10.44 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.07 1.48 7.59 -51.92 -0.39 1.09 16 45 H 0.07 1.55 3.55 -51.93 -0.18 1.36 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 48 H 0.09 1.33 4.24 -51.93 -0.22 1.11 16 49 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -29.51 373.85 -10.04 -39.54 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -7.13 Total: 14.20 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.20 Total: -19.49 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.66 Total: -35.13 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.66 Total: -21.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.51 -10.04 -39.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597157438.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.566 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds