Wall clock time and date at job start Tue Mar 31 2020 13:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46870 * 2 1 4 4 O 1.42898 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00269 * 179.97438 * 4 3 2 6 6 C 1.38757 * 120.05315 * 0.02562 * 5 4 3 7 7 C 1.38123 * 119.94415 * 179.97438 * 6 5 4 8 8 C 1.38285 * 120.05269 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.94344 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.46576 * 271.21871 * 9 8 7 11 11 C 1.47446 * 111.00302 * 74.00490 * 10 9 8 12 12 C 1.54317 * 107.23346 * 236.74014 * 11 10 9 13 13 C 1.55140 * 103.17817 * 337.62745 * 12 11 10 14 14 O 1.42899 * 110.98837 * 277.65109 * 13 12 11 15 15 C 1.50701 * 110.98794 * 153.82977 * 13 12 11 16 16 H 1.08000 * 119.99937 * 241.45174 * 15 13 12 17 17 C 1.37876 * 120.00091 * 61.45863 * 15 13 12 18 18 N 1.31511 * 119.99823 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99998 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47098 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46710 * 119.99916 * 19 17 15 22 22 H 1.48499 * 109.47114 * 239.99760 * 19 17 15 23 23 C 1.47849 * 111.00267 * 313.16303 * 10 9 8 24 24 C 1.38244 * 120.11700 * 0.29232 * 8 7 6 25 25 C 1.50697 * 119.97676 * 179.73070 * 24 8 7 26 26 C 1.38176 * 120.05381 * 359.45870 * 24 8 7 27 27 H 1.08999 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46864 * 299.99620 * 1 2 3 29 29 H 1.09000 * 109.47440 * 60.00086 * 1 2 3 30 30 H 1.09003 * 109.46864 * 240.00380 * 2 1 3 31 31 H 1.09000 * 109.47440 * 119.99914 * 2 1 3 32 32 H 1.09003 * 109.47067 * 60.00504 * 3 2 1 33 33 H 1.09000 * 109.47019 * 300.00172 * 3 2 1 34 34 H 1.07999 * 120.02775 * 359.94891 * 6 5 4 35 35 H 1.07992 * 119.97027 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47601 * 151.22154 * 9 8 7 37 37 H 1.08996 * 109.47384 * 31.21279 * 9 8 7 38 38 H 1.09002 * 109.88997 * 117.33340 * 11 10 9 39 39 H 1.09000 * 109.88446 * 356.14994 * 11 10 9 40 40 H 1.09003 * 110.70283 * 96.09805 * 12 11 10 41 41 H 1.08998 * 110.70714 * 219.15678 * 12 11 10 42 42 H 0.96693 * 113.99687 * 298.54043 * 14 13 12 43 43 H 0.97002 * 120.00054 * 180.02562 * 18 17 15 44 44 H 1.09007 * 110.36778 * 265.19494 * 23 10 9 45 45 H 1.08998 * 110.37268 * 27.42123 * 23 10 9 46 46 H 1.08995 * 109.47233 * 88.16694 * 25 24 8 47 47 H 1.08999 * 109.47275 * 208.17074 * 25 24 8 48 48 H 1.09002 * 109.46626 * 328.16635 * 25 24 8 49 49 H 1.07992 * 120.02823 * 180.24515 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0859 2.6535 -0.0012 6 6 3.3313 3.8179 -0.0007 7 6 3.9607 5.0474 -0.0008 8 6 5.3417 5.1184 -0.0009 9 6 6.0259 6.4612 -0.0004 10 7 6.2218 6.9113 -1.3850 11 6 4.9488 7.3564 -1.9811 12 6 4.7253 6.5206 -3.2589 13 6 6.1564 6.0480 -3.6271 14 8 6.8613 7.0622 -4.3458 15 6 6.1149 4.7624 -4.4124 16 1 6.5848 3.8735 -4.0183 17 6 5.4772 4.7212 -5.6342 18 7 4.9047 5.8036 -6.1139 19 14 5.4264 3.1279 -6.6079 20 1 6.1382 2.0645 -5.8546 21 1 4.0138 2.7225 -6.8203 22 1 6.0864 3.3301 -7.9228 23 6 6.7791 5.8267 -2.2209 24 6 6.0958 3.9598 -0.0070 25 6 7.6006 4.0409 -0.0131 26 6 5.4710 2.7274 -0.0017 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8901 33 1 1.6766 1.9564 -0.8900 34 1 2.2527 3.7629 -0.0007 35 1 3.3738 5.9539 0.0000 36 1 6.9934 6.3759 0.4942 37 1 5.4078 7.1837 0.5324 38 1 5.0085 8.4146 -2.2358 39 1 4.1317 7.1873 -1.2797 40 1 4.0787 5.6675 -3.0532 41 1 4.3065 7.1370 -4.0543 42 1 6.4509 7.3056 -5.1867 43 1 4.4557 5.7745 -6.9733 44 1 7.8652 5.9059 -2.2706 45 1 6.4880 4.8541 -1.8242 46 1 7.9660 4.0907 1.0125 47 1 8.0101 3.1571 -0.5022 48 1 7.9141 4.9337 -0.5543 49 1 6.0606 1.8226 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597157438.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:05 Heat of formation + Delta-G solvation = -79.964671 kcal Electronic energy + Delta-G solvation = -28456.261339 eV Core-core repulsion = 24768.562612 eV Total energy + Delta-G solvation = -3687.698727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.64833 -40.30539 -38.61924 -36.42158 -34.87316 -34.17709 -33.71328 -32.52048 -30.36237 -29.77193 -28.44178 -27.21366 -26.82751 -25.37786 -23.38299 -22.60761 -22.00162 -21.46716 -20.77820 -19.04528 -18.73493 -17.42417 -17.27793 -16.93596 -16.90335 -16.42229 -16.35880 -15.67817 -15.41840 -15.13685 -14.90592 -14.70664 -14.41351 -14.25470 -13.91941 -13.69851 -13.65676 -13.33621 -13.15932 -13.11262 -13.01733 -12.97443 -12.79632 -12.60760 -12.35311 -12.31924 -12.20780 -12.12110 -12.06416 -11.95017 -11.73986 -11.51362 -11.46586 -11.01535 -10.58814 -10.05598 -9.71722 -9.18805 -8.93621 -8.22235 -6.36149 0.36984 0.44646 1.33042 1.36684 1.47041 2.19448 2.35317 2.72756 3.02403 3.33090 3.74335 3.85010 3.89701 3.96172 3.97079 4.04691 4.16328 4.19240 4.23762 4.28049 4.32752 4.44141 4.50413 4.52860 4.53496 4.67800 4.76800 4.78783 4.81245 4.86540 4.92106 4.95325 5.06521 5.08053 5.13237 5.13625 5.20908 5.31106 5.32249 5.36035 5.44154 5.52600 5.57670 5.66660 5.82807 5.85340 6.01273 6.26702 6.33320 6.45539 6.69131 7.34820 7.47345 8.83163 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.005181 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.382455 B = 5403.377865 C = 7045.135509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.051 3.949 4 O -0.333 6.333 5 C 0.120 3.880 6 C -0.219 4.219 7 C -0.072 4.072 8 C -0.159 4.159 9 C 0.088 3.912 10 N -0.520 5.520 11 C 0.048 3.952 12 C -0.128 4.128 13 C 0.234 3.766 14 O -0.589 6.589 15 C -0.552 4.552 16 H 0.047 0.953 17 C 0.034 3.966 18 N -0.910 5.910 19 Si 0.948 3.052 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.275 1.275 23 C 0.055 3.945 24 C -0.038 4.038 25 C -0.127 4.127 26 C -0.171 4.171 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.051 0.949 42 H 0.370 0.630 43 H 0.267 0.733 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -6.054 15.160 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.023 4.023 4 O -0.247 6.247 5 C 0.075 3.925 6 C -0.238 4.238 7 C -0.090 4.090 8 C -0.161 4.161 9 C -0.039 4.039 10 N -0.242 5.242 11 C -0.079 4.079 12 C -0.167 4.167 13 C 0.194 3.806 14 O -0.396 6.396 15 C -0.591 4.591 16 H 0.065 0.935 17 C -0.167 4.167 18 N -0.550 5.550 19 Si 0.774 3.226 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.201 1.201 23 C -0.072 4.072 24 C -0.039 4.039 25 C -0.183 4.183 26 C -0.190 4.190 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.218 0.782 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.750 -5.771 15.563 17.566 hybrid contribution -1.298 -1.328 -1.615 2.461 sum -7.047 -7.100 13.948 17.165 Atomic orbital electron populations 1.21682 0.92655 1.03336 1.02631 1.21504 0.97301 0.93579 1.03415 1.23103 0.77230 1.00143 1.01850 1.86002 1.22841 1.27104 1.88764 1.19089 0.92473 0.84496 0.96481 1.21344 1.00613 0.92164 1.09675 1.21037 0.94033 0.97473 0.96475 1.20472 0.94149 0.96713 1.04778 1.21497 1.00885 0.90974 0.90532 1.63921 1.24323 1.33985 1.01993 1.22808 0.90730 0.99014 0.95381 1.22946 0.99549 0.97811 0.96401 1.19900 0.87291 0.85153 0.88283 1.86138 1.56006 1.59960 1.37521 1.21780 1.35633 0.96762 1.04897 0.93462 1.25584 0.93859 0.99235 0.97989 1.69825 1.36457 1.28878 1.19789 0.85666 0.77797 0.80396 0.78770 1.19830 1.20478 1.20085 1.23359 0.98229 0.93950 0.91706 1.19755 0.97021 0.91581 0.95494 1.21160 0.89727 1.03700 1.03730 1.20436 0.91724 0.98484 1.08363 0.90620 0.91471 0.92467 0.91714 0.90494 0.90741 0.92485 0.84185 0.84716 0.88799 0.88791 0.91686 0.91742 0.94617 0.92992 0.78208 0.92332 0.92483 0.90599 0.88689 0.91190 0.90778 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -2.13 6.30 30.60 0.19 -1.94 16 3 C 0.05 1.14 4.74 71.98 0.34 1.48 16 4 O -0.33 -9.87 10.14 -92.42 -0.94 -10.81 16 5 C 0.12 3.81 6.69 22.51 0.15 3.96 16 6 C -0.22 -6.48 9.04 22.37 0.20 -6.28 16 7 C -0.07 -2.14 8.81 22.25 0.20 -1.94 16 8 C -0.16 -4.94 4.11 -19.85 -0.08 -5.02 16 9 C 0.09 2.61 5.16 85.56 0.44 3.05 16 10 N -0.52 -19.55 5.41 -889.08 -4.81 -24.36 16 11 C 0.05 1.86 6.41 86.65 0.56 2.41 16 12 C -0.13 -6.06 5.36 31.77 0.17 -5.89 16 13 C 0.23 11.94 0.88 -9.99 -0.01 11.93 16 14 O -0.59 -31.96 13.16 -148.98 -1.96 -33.92 16 15 C -0.55 -30.77 8.29 25.60 0.21 -30.56 16 16 H 0.05 2.67 7.79 -2.91 -0.02 2.65 16 17 C 0.03 1.84 5.29 84.65 0.45 2.29 16 18 N -0.91 -49.91 10.74 21.45 0.23 -49.68 16 19 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.05 2.38 4.02 86.94 0.35 2.73 16 24 C -0.04 -1.17 4.37 -19.88 -0.09 -1.26 16 25 C -0.13 -3.42 8.41 71.23 0.60 -2.82 16 26 C -0.17 -5.50 9.64 22.37 0.22 -5.28 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 33 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 34 H 0.14 3.46 6.30 -2.91 -0.02 3.44 16 35 H 0.14 3.52 6.82 -2.91 -0.02 3.50 16 36 H 0.09 2.50 6.67 -2.39 -0.02 2.48 16 37 H 0.09 2.37 7.86 -2.39 -0.02 2.35 16 38 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.06 2.13 5.38 -2.39 -0.01 2.11 16 40 H 0.03 1.77 8.03 -2.39 -0.02 1.75 16 41 H 0.05 2.64 7.53 -2.39 -0.02 2.62 16 42 H 0.37 20.36 7.56 -74.06 -0.56 19.80 16 43 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.06 2.56 7.59 -2.38 -0.02 2.54 16 45 H 0.08 3.25 3.55 -2.39 -0.01 3.24 16 46 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 1.83 8.07 -2.39 -0.02 1.81 16 48 H 0.07 2.19 4.24 -2.39 -0.01 2.18 16 49 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -62.84 373.85 -0.45 -63.30 By element: Atomic # 1 Polarization: 43.66 SS G_CDS: 0.39 Total: 44.06 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 4.61 Total: -34.32 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -4.58 Total: -74.04 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -2.90 Total: -44.73 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -62.84 -0.45 -63.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597157438.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.669 kcal (2) G-P(sol) polarization free energy of solvation -62.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds