Wall clock time and date at job start Tue Mar 31 2020 12:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99806 * 2 1 4 4 C 1.53001 * 109.46629 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46998 * 300.00008 * 3 2 1 6 6 N 1.46502 * 109.47101 * 300.00350 * 5 3 2 7 7 C 1.39663 * 119.99806 * 180.02562 * 6 5 3 8 8 C 1.38973 * 120.04649 * 0.02562 * 7 6 5 9 9 C 1.38116 * 120.03003 * 179.97438 * 8 7 6 10 10 C 1.38216 * 120.13578 * 359.74695 * 9 8 7 11 11 C 1.38779 * 120.08401 * 0.51068 * 10 9 8 12 12 O 1.35897 * 120.00949 * 179.76812 * 11 10 9 13 13 C 1.42898 * 117.00481 * 359.71829 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46756 * 59.99920 * 19 17 15 21 21 H 1.48490 * 109.47381 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47117 * 300.00527 * 19 17 15 23 23 C 1.38609 * 119.96517 * 359.48769 * 11 10 9 24 24 C 1.52994 * 109.47360 * 60.00143 * 3 2 1 25 25 C 1.53002 * 117.50138 * 133.62078 * 24 3 2 26 26 C 1.53003 * 60.00013 * 252.50994 * 25 24 3 27 27 H 1.09004 * 109.47445 * 299.99771 * 1 2 3 28 28 H 1.08996 * 109.47616 * 60.00168 * 1 2 3 29 29 H 1.09004 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47042 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46934 * 299.99443 * 4 3 2 32 32 H 1.08995 * 109.47804 * 59.99593 * 4 3 2 33 33 H 1.09001 * 109.46841 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.46674 * 60.00114 * 5 3 2 35 35 H 0.97001 * 119.99801 * 359.97438 * 6 5 3 36 36 H 1.07996 * 119.98339 * 359.95966 * 8 7 6 37 37 H 1.08007 * 119.92769 * 180.02562 * 9 8 7 38 38 H 1.07991 * 119.95689 * 180.26971 * 10 9 8 39 39 H 1.09002 * 109.47259 * 300.00417 * 13 12 11 40 40 H 1.09001 * 109.47074 * 60.00439 * 13 12 11 41 41 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 42 42 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 43 43 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.06150 * 180.23058 * 23 11 10 45 45 H 1.09003 * 115.55211 * 279.32840 * 24 3 2 46 46 H 1.09005 * 117.49527 * 359.97438 * 25 24 3 47 47 H 1.08989 * 117.50221 * 145.02039 * 25 24 3 48 48 H 1.09001 * 117.50096 * 252.50736 * 26 25 24 49 49 H 1.09004 * 117.49982 * 107.48481 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5587 2.0647 -1.2493 6 7 1.9909 1.3377 -2.4455 7 6 1.6926 1.8402 -3.7139 8 6 0.9863 3.0302 -3.8425 9 6 0.6920 3.5272 -5.0971 10 6 1.1031 2.8460 -6.2273 11 6 1.8041 1.6545 -6.1050 12 8 2.2034 0.9835 -7.2173 13 6 1.8622 1.5593 -8.4798 14 6 2.3912 0.6690 -9.6060 15 6 2.0319 1.2765 -10.9375 16 1 1.4817 2.2050 -10.9766 17 6 2.4065 0.6475 -12.1059 18 7 3.0770 -0.4829 -12.0583 19 14 1.9606 1.4001 -13.7564 20 1 2.5687 2.7506 -13.8650 21 1 2.4752 0.5367 -14.8494 22 1 0.4840 1.5119 -13.8666 23 6 2.1016 1.1522 -4.8478 24 6 1.5588 2.0647 1.2492 25 6 2.6292 2.8123 2.0470 26 6 2.0162 1.5270 2.6066 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.9788 2.1804 -0.0011 31 1 3.8574 0.6436 0.8892 32 1 3.8567 0.6438 -0.8907 33 1 2.0023 3.0604 -1.2495 34 1 0.4721 2.1507 -1.2492 35 1 2.4849 0.5076 -2.3564 36 1 0.6673 3.5664 -2.9611 37 1 0.1434 4.4523 -5.1952 38 1 0.8752 3.2394 -7.2069 39 1 0.7783 1.6414 -8.5607 40 1 2.3087 2.5505 -8.5597 41 1 3.4751 0.5865 -9.5253 42 1 1.9445 -0.3220 -9.5261 43 1 3.3409 -0.9253 -12.8803 44 1 2.6503 0.2270 -4.7508 45 1 0.5669 2.5134 1.1939 46 1 3.6551 2.7627 1.6820 47 1 2.3417 3.7529 2.5165 48 1 1.3254 1.6221 3.4444 49 1 2.6387 0.6322 2.6096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602482415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:37 Heat of formation + Delta-G solvation = -54.647603 kcal Electronic energy + Delta-G solvation = -26158.568393 eV Core-core repulsion = 22471.967496 eV Total energy + Delta-G solvation = -3686.600896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.21240 -40.69832 -38.86085 -37.13826 -35.97197 -35.36924 -32.60530 -32.40792 -30.83530 -29.53043 -27.95763 -27.09783 -26.83474 -24.41363 -23.86502 -23.24732 -22.88103 -21.66617 -20.23122 -19.33727 -18.36805 -17.75444 -17.66769 -16.96162 -16.91010 -16.71517 -16.56713 -16.32151 -15.96355 -15.73738 -15.32164 -14.78269 -14.49366 -14.45848 -14.31095 -14.05971 -14.02467 -13.61648 -13.41121 -13.16548 -13.01596 -12.71290 -12.59367 -12.56582 -12.53314 -12.48888 -12.09493 -11.97617 -11.68157 -11.59679 -11.54489 -11.38666 -11.29063 -11.10126 -10.86267 -10.60803 -10.50450 -9.21794 -8.34623 -8.25804 -6.39723 0.57323 0.69931 1.41130 1.45555 1.53511 2.12323 2.37504 2.58650 2.80055 2.96611 3.08230 3.12668 3.49213 3.74593 3.88571 3.99840 4.08642 4.15661 4.26071 4.28690 4.29352 4.31787 4.35876 4.43137 4.52571 4.55103 4.59742 4.68164 4.70195 4.75348 4.79209 4.80155 4.87893 4.95466 5.00684 5.02564 5.14924 5.28613 5.28686 5.32874 5.34004 5.47461 5.52461 5.63621 5.67154 5.76629 6.07686 6.23214 6.40604 6.62127 6.74722 6.77202 7.30179 8.87158 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.033121 B = 0.001911 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.189202 B =14646.252644 C =14922.557297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.389 6.389 3 C 0.139 3.861 4 C -0.144 4.144 5 C 0.106 3.894 6 N -0.733 5.733 7 C 0.255 3.745 8 C -0.237 4.237 9 C -0.031 4.031 10 C -0.282 4.282 11 C 0.153 3.847 12 O -0.343 6.343 13 C 0.087 3.913 14 C 0.028 3.972 15 C -0.547 4.547 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.978 3.022 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.264 1.264 23 C -0.254 4.254 24 C -0.189 4.189 25 C -0.168 4.168 26 C -0.166 4.166 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.122 0.878 39 H 0.059 0.941 40 H 0.060 0.940 41 H -0.002 1.002 42 H -0.003 1.003 43 H 0.267 0.733 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 8.776 32.186 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.308 6.308 3 C 0.100 3.900 4 C -0.201 4.201 5 C -0.018 4.018 6 N -0.363 5.363 7 C 0.150 3.850 8 C -0.259 4.259 9 C -0.049 4.049 10 C -0.302 4.302 11 C 0.106 3.894 12 O -0.257 6.257 13 C 0.012 3.988 14 C -0.009 4.009 15 C -0.585 4.585 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.801 3.199 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.277 4.277 24 C -0.208 4.208 25 C -0.205 4.205 26 C -0.203 4.203 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.238 0.762 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.140 0.860 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.075 0.925 44 H 0.136 0.864 45 H 0.131 0.869 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.120 0.880 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.653 8.404 32.236 33.637 hybrid contribution -0.112 -0.283 -1.255 1.291 sum -4.765 8.121 30.981 32.380 Atomic orbital electron populations 1.22812 0.80519 1.03173 1.00517 1.87965 1.20688 1.27364 1.94833 1.21157 0.94498 0.82793 0.91584 1.21924 0.91865 1.03464 1.02863 1.21959 0.99951 0.96215 0.83675 1.44559 1.62642 1.27724 1.01330 1.17414 0.91317 0.91772 0.84527 1.20726 1.08684 0.98062 0.98448 1.20964 0.94788 0.98403 0.90758 1.21221 1.09894 0.98314 1.00814 1.19141 0.92515 0.91154 0.86543 1.86056 1.74790 1.50636 1.14225 1.22841 0.99310 0.97161 0.79465 1.18972 0.95505 0.94709 0.91753 1.21369 1.37063 1.09060 0.90959 0.91079 1.26071 0.94518 0.95234 1.03988 1.70125 1.39158 1.18238 1.29498 0.85313 0.79073 0.78417 0.77111 1.18805 1.20735 1.18817 1.19755 1.13974 1.04777 0.89216 1.22709 1.00641 1.05128 0.92340 1.23218 0.98297 0.96423 1.02516 1.22908 1.03816 0.98101 0.95445 0.92563 0.94104 0.89494 0.89298 0.91178 0.92493 0.90226 0.91459 0.76154 0.83797 0.83185 0.86007 0.92266 0.92211 0.98393 0.98415 0.92451 0.86367 0.86904 0.87579 0.87591 0.87990 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.31 113.37 1.17 1.52 16 2 O -0.39 -6.51 10.07 -148.98 -1.50 -8.00 16 3 C 0.14 1.79 0.61 -10.79 -0.01 1.79 16 4 C -0.14 -1.79 7.33 71.98 0.53 -1.26 16 5 C 0.11 1.52 3.45 86.38 0.30 1.82 16 6 N -0.73 -14.56 5.32 -339.46 -1.81 -16.37 16 7 C 0.25 6.60 6.65 38.20 0.25 6.85 16 8 C -0.24 -5.48 9.31 22.42 0.21 -5.28 16 9 C -0.03 -0.77 10.03 22.24 0.22 -0.55 16 10 C -0.28 -9.24 9.04 22.39 0.20 -9.03 16 11 C 0.15 5.79 6.68 22.49 0.15 5.94 16 12 O -0.34 -15.55 10.13 -92.39 -0.94 -16.48 16 13 C 0.09 3.99 4.68 71.98 0.34 4.33 16 14 C 0.03 1.57 5.34 29.85 0.16 1.73 16 15 C -0.55 -31.58 9.11 25.60 0.23 -31.34 16 16 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 17 C 0.00 0.02 5.46 84.65 0.46 0.48 16 18 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 19 Si 0.98 44.12 29.54 68.60 2.03 46.14 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 C -0.25 -8.35 9.83 22.49 0.22 -8.13 16 24 C -0.19 -1.85 4.00 -10.79 -0.04 -1.89 16 25 C -0.17 -1.31 9.65 30.60 0.30 -1.01 16 26 C -0.17 -1.53 9.85 30.60 0.30 -1.23 16 27 H 0.06 0.59 6.99 -2.39 -0.02 0.58 16 28 H 0.04 0.59 6.42 -2.39 -0.02 0.57 16 29 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.09 0.89 6.75 -2.39 -0.02 0.87 16 31 H 0.07 0.83 6.96 -2.38 -0.02 0.81 16 32 H 0.06 0.83 6.86 -2.39 -0.02 0.82 16 33 H 0.08 1.02 7.95 -2.39 -0.02 1.00 16 34 H 0.07 0.93 6.35 -2.39 -0.02 0.91 16 35 H 0.40 8.14 7.20 -92.71 -0.67 7.47 16 36 H 0.14 2.45 6.73 -2.91 -0.02 2.43 16 37 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.12 3.99 6.29 -2.91 -0.02 3.97 16 39 H 0.06 2.58 7.67 -2.39 -0.02 2.56 16 40 H 0.06 2.60 7.65 -2.39 -0.02 2.58 16 41 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 45 H 0.11 0.97 7.90 -2.39 -0.02 0.95 16 46 H 0.11 0.78 5.89 -2.38 -0.01 0.76 16 47 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 48 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.09 0.99 7.29 -2.38 -0.02 0.97 16 Total: -1.00 -69.16 388.77 3.34 -65.82 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.28 Total: 21.47 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 4.99 Total: -35.26 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.52 Total: -73.69 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -2.44 Total: -24.49 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.16 3.34 -65.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602482415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.175 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds