Wall clock time and date at job start Tue Mar 31 2020 14:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35983 * 116.99826 * 2 1 4 4 C 1.38811 * 120.17469 * 0.02610 * 3 2 1 5 5 C 1.37694 * 119.93455 * 179.97438 * 4 3 2 6 6 C 1.38903 * 120.83711 * 359.60483 * 5 4 3 7 7 C 1.39215 * 118.96848 * 0.61029 * 6 5 4 8 8 C 1.37951 * 120.31744 * 359.57770 * 7 6 5 9 9 C 1.50699 * 119.86096 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.46790 * 259.99970 * 9 8 7 11 11 C 1.46903 * 110.99827 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47236 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.46746 * 305.00005 * 12 11 10 14 14 C 1.53001 * 109.46873 * 64.99738 * 12 11 10 15 15 C 1.53000 * 109.47059 * 185.00013 * 12 11 10 16 16 C 1.50699 * 109.46918 * 174.99827 * 15 12 11 17 17 H 1.07996 * 120.00074 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99771 * 179.97438 * 16 15 12 19 19 N 1.31510 * 119.99839 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99630 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47161 * 60.00819 * 20 18 16 22 22 H 1.48504 * 109.46801 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47190 * 300.00390 * 20 18 16 24 24 O 1.36243 * 111.20564 * 180.65608 * 6 5 4 25 25 C 1.43765 * 109.22683 * 340.93504 * 24 6 5 26 26 H 1.09002 * 110.74939 * 146.10429 * 25 24 6 27 27 C 1.53003 * 110.74752 * 269.27195 * 25 24 6 28 28 C 1.51659 * 132.11705 * 179.02178 * 5 4 3 29 29 H 1.08997 * 109.47485 * 60.00028 * 1 2 3 30 30 H 1.09004 * 109.46993 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46808 * 299.99405 * 1 2 3 32 32 H 1.07998 * 120.03827 * 359.97438 * 4 3 2 33 33 H 1.08009 * 119.84352 * 179.59961 * 7 6 5 34 34 H 1.08997 * 109.46995 * 19.99510 * 9 8 7 35 35 H 1.08993 * 109.47519 * 139.99833 * 9 8 7 36 36 H 1.00895 * 111.00219 * 303.94821 * 10 9 8 37 37 H 1.09006 * 109.47076 * 299.99773 * 11 10 9 38 38 H 1.09000 * 109.47296 * 59.99373 * 11 10 9 39 39 H 1.08999 * 109.47217 * 60.00555 * 14 12 11 40 40 H 1.08999 * 109.46877 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47236 * 299.99942 * 14 12 11 42 42 H 1.09001 * 109.46791 * 294.99782 * 15 12 11 43 43 H 1.08996 * 109.47350 * 54.99914 * 15 12 11 44 44 H 0.97008 * 119.99578 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.47082 * 56.07981 * 27 25 24 46 46 H 1.08990 * 109.47288 * 176.08334 * 27 25 24 47 47 H 1.08999 * 109.46778 * 296.08239 * 27 25 24 48 48 H 1.08994 * 110.93768 * 77.73127 * 28 5 4 49 49 H 1.08999 * 110.93603 * 314.05317 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2938 2.3781 0.0005 5 6 1.9240 3.6023 0.0011 6 6 3.3103 3.6895 0.0093 7 6 4.0597 2.5163 0.0041 8 6 3.4310 1.2884 -0.0003 9 6 4.2524 0.0249 -0.0053 10 7 4.3170 -0.5115 -1.3714 11 6 5.1122 -1.7460 -1.4150 12 6 5.1560 -2.2739 -2.8505 13 1 4.1393 -2.3984 -3.2230 14 6 5.9057 -1.2779 -3.7374 15 6 5.8773 -3.6230 -2.8759 16 6 5.8133 -4.2007 -4.2663 17 1 5.3090 -3.6595 -5.0532 18 6 6.3995 -5.4196 -4.5340 19 7 7.0140 -6.0783 -3.5758 20 14 6.3195 -6.1360 -6.2573 21 1 6.9752 -5.2055 -7.2111 22 1 7.0197 -7.4454 -6.2819 23 1 4.8998 -6.3269 -6.6486 24 8 3.7223 4.9881 0.0228 25 6 2.6450 5.8312 -0.4190 26 1 2.6679 6.7902 0.0987 27 6 2.7021 6.0342 -1.9345 28 6 1.3895 5.0215 -0.0175 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2151 2.3255 0.0006 33 1 5.1386 2.5677 0.0038 34 1 5.2602 0.2453 0.3465 35 1 3.7907 -0.7112 0.6526 36 1 3.3920 -0.6636 -1.7443 37 1 6.1260 -1.5374 -1.0731 38 1 4.6569 -2.4946 -0.7667 39 1 6.9225 -1.1533 -3.3650 40 1 5.9366 -1.6537 -4.7601 41 1 5.3918 -0.3168 -3.7193 42 1 6.9193 -3.4833 -2.5880 43 1 5.3955 -4.3058 -2.1762 44 1 7.4261 -6.9361 -3.7641 45 1 2.6908 5.0642 -2.4316 46 1 1.8391 6.6173 -2.2557 47 1 3.6172 6.5657 -2.1956 48 1 1.0347 5.3170 0.9698 49 1 0.6009 5.1309 -0.7620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602508285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:12 Heat of formation + Delta-G solvation = -81.674309 kcal Electronic energy + Delta-G solvation = -26626.366003 eV Core-core repulsion = 22938.593141 eV Total energy + Delta-G solvation = -3687.772862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.25830 -40.49281 -38.45566 -37.41395 -35.65890 -34.29891 -33.71233 -31.90983 -30.41296 -29.15607 -28.61427 -28.01936 -26.63636 -25.26861 -23.78046 -23.38427 -22.56546 -21.86722 -20.74367 -18.72027 -18.48185 -18.14644 -17.60578 -17.02139 -16.65396 -16.52304 -16.40133 -15.76282 -15.57303 -15.42910 -15.20750 -14.84811 -14.69312 -14.34932 -14.24459 -13.77945 -13.55732 -13.52812 -13.27800 -13.14077 -13.08101 -12.95329 -12.89673 -12.73159 -12.60343 -12.53005 -12.32553 -12.20033 -12.09572 -11.95432 -11.58743 -11.48185 -11.16459 -11.07605 -10.89173 -10.51814 -9.88699 -9.31526 -8.64624 -8.16088 -6.25280 0.17887 0.39213 1.40395 1.43584 1.51206 2.23986 2.42664 2.43851 2.64166 3.16978 3.36945 3.44815 3.59557 3.79569 3.97057 4.00415 4.10345 4.19111 4.24475 4.31113 4.33653 4.41629 4.48841 4.53841 4.55868 4.61836 4.67408 4.75417 4.75920 4.79617 4.90157 4.93648 4.95071 5.03385 5.08480 5.13613 5.18704 5.25574 5.29582 5.36778 5.46692 5.50909 5.56436 5.58399 5.82199 5.89897 6.05275 6.15806 6.32583 6.44891 6.49353 6.90201 7.42602 8.95860 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.002390 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.101352 B =11712.565538 C =12273.631111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.099 3.901 4 C -0.158 4.158 5 C -0.138 4.138 6 C 0.053 3.947 7 C -0.095 4.095 8 C -0.088 4.088 9 C 0.111 3.889 10 N -0.676 5.676 11 C 0.077 3.923 12 C -0.072 4.072 13 H 0.051 0.949 14 C -0.112 4.112 15 C 0.033 3.967 16 C -0.529 4.529 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.267 1.267 24 O -0.321 6.321 25 C 0.069 3.931 26 H 0.139 0.861 27 C -0.170 4.170 28 C -0.100 4.100 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.341 0.659 37 H 0.065 0.935 38 H 0.018 0.982 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.063 0.937 42 H -0.009 1.009 43 H -0.014 1.014 44 H 0.262 0.738 45 H 0.043 0.957 46 H 0.099 0.901 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.758 25.729 9.424 32.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.054 3.946 4 C -0.177 4.177 5 C -0.139 4.139 6 C 0.008 3.992 7 C -0.114 4.114 8 C -0.089 4.089 9 C -0.017 4.017 10 N -0.307 5.307 11 C -0.052 4.052 12 C -0.091 4.091 13 H 0.069 0.931 14 C -0.169 4.169 15 C -0.004 4.004 16 C -0.568 4.568 17 H 0.079 0.921 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.192 1.192 24 O -0.237 6.237 25 C 0.014 3.986 26 H 0.156 0.844 27 C -0.227 4.227 28 C -0.137 4.137 29 H 0.084 0.916 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.009 0.991 43 H 0.004 0.996 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.117 0.883 47 H 0.085 0.915 48 H 0.126 0.874 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.845 25.881 9.334 31.750 hybrid contribution -0.485 -1.489 -0.266 1.588 sum -16.330 24.392 9.069 30.723 Atomic orbital electron populations 1.23309 0.76616 1.05257 1.02304 1.86102 1.23270 1.26269 1.88968 1.18745 0.91531 0.84921 0.99428 1.20496 1.01004 0.89696 1.06489 1.20866 0.93367 0.96242 1.03469 1.19508 0.92950 0.85484 1.01262 1.20002 1.00244 0.88224 1.02980 1.18787 0.90785 0.94527 1.04799 1.20633 0.98905 0.92245 0.89952 1.60574 1.19773 1.29851 1.20467 1.21875 0.97643 0.89301 0.96355 1.20995 0.98809 0.95152 0.94156 0.93053 1.21472 0.98907 0.97995 0.98556 1.19003 0.94085 0.91903 0.95446 1.21606 1.34494 1.04099 0.96553 0.92145 1.25965 0.95081 0.97665 1.01310 1.70101 1.37729 1.15317 1.34478 0.85553 0.78626 0.77476 0.79714 1.19246 1.20965 1.19216 1.86878 1.40838 1.13549 1.82411 1.23723 0.83492 0.94850 0.96513 0.84358 1.22256 1.04139 1.02323 0.94002 1.21974 0.98613 0.88265 1.04838 0.91603 0.87162 0.91363 0.82770 0.84867 0.90010 0.94375 0.84162 0.91697 0.96404 0.94502 0.94298 0.91838 0.99090 0.99561 0.92938 0.93817 0.88261 0.91528 0.87409 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.82 113.37 1.11 1.38 16 2 O -0.33 -7.65 9.68 -93.36 -0.90 -8.55 16 3 C 0.10 2.35 6.65 22.51 0.15 2.50 16 4 C -0.16 -3.01 9.03 22.28 0.20 -2.81 16 5 C -0.14 -2.65 6.26 -19.53 -0.12 -2.77 16 6 C 0.05 1.24 6.93 22.66 0.16 1.40 16 7 C -0.10 -2.43 9.67 22.44 0.22 -2.22 16 8 C -0.09 -2.29 5.40 -19.83 -0.11 -2.40 16 9 C 0.11 3.11 5.47 85.56 0.47 3.58 16 10 N -0.68 -21.45 5.94 -517.92 -3.08 -24.53 16 11 C 0.08 2.86 5.08 86.30 0.44 3.30 16 12 C -0.07 -3.11 2.48 -10.79 -0.03 -3.14 16 13 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 14 C -0.11 -4.53 8.89 71.98 0.64 -3.89 16 15 C 0.03 1.81 4.45 29.85 0.13 1.94 16 16 C -0.53 -30.70 8.41 25.60 0.22 -30.48 16 17 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 18 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 19 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 20 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 O -0.32 -7.11 10.82 -96.33 -1.04 -8.15 16 25 C 0.07 0.91 4.30 31.18 0.13 1.05 16 26 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 27 C -0.17 -2.06 9.51 71.98 0.68 -1.38 16 28 C -0.10 -1.15 6.65 30.73 0.20 -0.95 16 29 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 30 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 0.72 7.67 -2.38 -0.02 0.70 16 32 H 0.15 2.01 6.32 -2.91 -0.02 1.99 16 33 H 0.13 3.29 8.02 -2.91 -0.02 3.26 16 34 H 0.08 2.19 7.99 -2.39 -0.02 2.18 16 35 H 0.04 1.10 7.84 -2.39 -0.02 1.08 16 36 H 0.34 10.82 8.67 -89.70 -0.78 10.04 16 37 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.65 6.95 -2.39 -0.02 1.64 16 41 H 0.06 2.29 7.75 -2.39 -0.02 2.27 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 44 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 45 H 0.04 0.72 8.11 -2.38 -0.02 0.70 16 46 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.11 0.84 7.93 -2.39 -0.02 0.82 16 Total: -1.00 -70.74 394.90 2.40 -68.34 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.15 Total: 18.18 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 4.96 Total: -34.61 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -2.79 Total: -82.51 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.95 Total: -16.70 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.74 2.40 -68.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602508285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.332 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds