Wall clock time and date at job start Tue Mar 31 2020 14:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.50740 * 2 1 4 4 C 1.53128 * 109.50633 * 120.08447 * 2 1 3 5 5 C 1.53116 * 109.15807 * 177.55381 * 4 2 1 6 6 C 1.53035 * 109.31237 * 302.40140 * 5 4 2 7 7 N 1.46844 * 109.52279 * 59.16174 * 6 5 4 8 8 C 1.46902 * 111.00087 * 174.15780 * 7 6 5 9 9 C 1.52996 * 109.46706 * 66.04734 * 8 7 6 10 10 H 1.09003 * 109.47578 * 305.00000 * 9 8 7 11 11 O 1.42900 * 109.47396 * 65.00054 * 9 8 7 12 12 C 1.53006 * 109.46812 * 184.99815 * 9 8 7 13 13 O 1.42903 * 109.47101 * 174.99933 * 12 9 8 14 14 C 1.35669 * 116.99826 * 180.02562 * 13 12 9 15 15 C 1.39312 * 119.82230 * 359.72476 * 14 13 12 16 16 C 1.36436 * 120.18810 * 179.75809 * 15 14 13 17 17 C 1.40838 * 119.80953 * 0.51677 * 16 15 14 18 18 C 1.41211 * 120.17701 * 179.76081 * 17 16 15 19 19 H 1.08007 * 119.99845 * 204.52763 * 18 17 16 20 20 C 1.39888 * 120.00179 * 24.53545 * 18 17 16 21 21 N 1.30876 * 120.00275 * 17.93708 * 20 18 17 22 22 Si 1.86796 * 120.00032 * 197.94110 * 20 18 17 23 23 H 1.48504 * 109.47159 * 89.99743 * 22 20 18 24 24 H 1.48503 * 109.47445 * 209.99492 * 22 20 18 25 25 H 1.48503 * 109.47253 * 329.99731 * 22 20 18 26 26 C 1.40837 * 119.64032 * 359.74277 * 17 16 15 27 27 C 1.36429 * 119.81301 * 359.97438 * 26 17 16 28 28 C 1.46845 * 111.19886 * 298.25987 * 7 6 5 29 29 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47043 * 300.07120 * 1 2 3 31 31 H 1.08997 * 109.47235 * 60.07612 * 1 2 3 32 32 H 1.09003 * 109.49082 * 57.66847 * 4 2 1 33 33 H 1.09001 * 109.55057 * 297.48403 * 4 2 1 34 34 H 1.09006 * 109.50098 * 182.44248 * 5 4 2 35 35 H 1.09003 * 109.50290 * 62.36833 * 5 4 2 36 36 H 1.09005 * 109.45855 * 179.17930 * 6 5 4 37 37 H 1.08996 * 109.46333 * 299.15558 * 6 5 4 38 38 H 1.08998 * 109.46797 * 186.04725 * 8 7 6 39 39 H 1.08995 * 109.47160 * 306.04589 * 8 7 6 40 40 H 0.96702 * 114.00031 * 59.99635 * 11 9 8 41 41 H 1.08995 * 109.47377 * 295.00094 * 12 9 8 42 42 H 1.09003 * 109.46875 * 55.00040 * 12 9 8 43 43 H 1.08002 * 119.90017 * 0.02562 * 15 14 13 44 44 H 1.07993 * 120.09507 * 180.25365 * 16 15 14 45 45 H 0.97002 * 120.00812 * 180.02562 * 21 20 18 46 46 H 1.07997 * 120.09372 * 180.02562 * 26 17 16 47 47 H 1.08000 * 119.91016 * 179.97438 * 27 26 17 48 48 H 1.09000 * 109.46446 * 181.76057 * 28 7 6 49 49 H 1.08996 * 109.45980 * 301.73216 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 1.2489 5 6 3.5712 -0.7725 1.2103 6 6 4.0229 -1.4731 -0.0731 7 7 3.5092 -0.7417 -1.2382 8 6 4.0372 -1.3049 -2.4880 9 6 3.4928 -2.7220 -2.6788 10 1 3.7255 -3.3222 -1.7991 11 8 2.0760 -2.6680 -2.8573 12 6 4.1386 -3.3545 -3.9132 13 8 3.7195 -4.7161 -4.0252 14 6 4.2058 -5.4259 -5.0741 15 6 5.0682 -4.8165 -5.9828 16 6 5.5655 -5.5247 -7.0376 17 6 5.1962 -6.8725 -7.2124 18 6 5.7024 -7.6113 -8.3042 19 1 5.1573 -8.4660 -8.6770 20 6 6.9099 -7.2365 -8.9027 21 7 7.7396 -6.4500 -8.2657 22 14 7.3380 -7.8584 -10.6113 23 1 6.8249 -6.9053 -11.6280 24 1 8.8129 -7.9738 -10.7410 25 1 6.7167 -9.1904 -10.8234 26 6 4.3196 -7.4795 -6.2922 27 6 3.8358 -6.7589 -5.2396 28 6 2.0409 -0.7229 -1.2484 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8893 31 1 -0.3633 0.5126 -0.8906 32 1 1.6447 -1.7387 1.2691 33 1 1.7163 -0.1867 2.1402 34 1 3.9395 -1.3244 2.0752 35 1 3.9684 0.2424 1.2302 36 1 5.1121 -1.4963 -0.1100 37 1 3.6373 -2.4925 -0.0854 38 1 3.7283 -0.6810 -3.3267 39 1 5.1257 -1.3371 -2.4408 40 1 1.7956 -2.1491 -3.6235 41 1 3.8334 -2.8060 -4.8043 42 1 5.2236 -3.3151 -3.8161 43 1 5.3471 -3.7817 -5.8495 44 1 6.2371 -5.0520 -7.7388 45 1 8.5768 -6.1897 -8.6809 46 1 4.0319 -8.5127 -6.4190 47 1 3.1632 -7.2227 -4.5333 48 1 1.6905 -0.2014 -2.1390 49 1 1.6648 -1.7459 -1.2550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604468290.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:36 Heat of formation + Delta-G solvation = -96.762505 kcal Electronic energy + Delta-G solvation = -26753.405296 eV Core-core repulsion = 23064.978160 eV Total energy + Delta-G solvation = -3688.427136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.00725 -40.29159 -38.52133 -37.50545 -35.22716 -35.02424 -32.75740 -31.79772 -31.50350 -30.62870 -27.54837 -27.29040 -26.38520 -24.33085 -23.40228 -22.86921 -22.13804 -22.05754 -20.43611 -19.28795 -18.68249 -17.84871 -17.47779 -16.95580 -16.47398 -16.24263 -16.06786 -15.79758 -15.53616 -15.41331 -15.24791 -14.85382 -14.67352 -14.22539 -13.94828 -13.81961 -13.69111 -13.52025 -13.32835 -13.16508 -13.02864 -12.78352 -12.74625 -12.68817 -12.33513 -12.21123 -12.09177 -12.02622 -11.69486 -11.62254 -11.51060 -11.39607 -11.23430 -11.10122 -10.99399 -10.88351 -9.59359 -9.06199 -8.93339 -8.61671 -6.24240 0.91638 1.02161 1.39098 1.51634 1.52056 2.21962 2.45152 2.70525 2.96632 3.37902 3.68126 3.77119 3.90081 3.90436 3.95136 3.98456 4.11334 4.20502 4.26845 4.35800 4.37430 4.45278 4.50184 4.58014 4.72069 4.74815 4.80270 4.84858 4.88763 4.95380 4.96717 4.98651 5.03626 5.11932 5.13528 5.17043 5.26524 5.34101 5.35240 5.39585 5.50216 5.59216 5.63991 5.95107 6.04316 6.09181 6.16886 6.21779 6.54192 6.70558 6.78254 6.93540 7.08291 8.35237 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032578 B = 0.002151 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.277785 B =13012.712111 C =13272.139126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.113 4.113 6 C 0.045 3.955 7 N -0.530 5.530 8 C 0.034 3.966 9 C 0.090 3.910 10 H 0.090 0.910 11 O -0.558 6.558 12 C 0.033 3.967 13 O -0.331 6.331 14 C -0.002 4.002 15 C -0.175 4.175 16 C -0.155 4.155 17 C 0.054 3.946 18 C -0.499 4.499 19 H 0.075 0.925 20 C 0.033 3.967 21 N -0.831 5.831 22 Si 0.983 3.017 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.206 4.206 27 C -0.124 4.124 28 C 0.049 3.951 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.024 0.976 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.384 0.616 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.119 0.881 44 H 0.108 0.892 45 H 0.287 0.713 46 H 0.109 0.891 47 H 0.115 0.885 48 H 0.071 0.929 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 14.828 13.789 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.083 4.083 7 N -0.253 5.253 8 C -0.095 4.095 9 C 0.029 3.971 10 H 0.108 0.892 11 O -0.366 6.366 12 C -0.044 4.044 13 O -0.247 6.247 14 C -0.046 4.046 15 C -0.193 4.193 16 C -0.175 4.175 17 C 0.052 3.948 18 C -0.528 4.528 19 H 0.094 0.906 20 C -0.180 4.180 21 N -0.458 5.458 22 Si 0.804 3.196 23 H -0.187 1.187 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.225 4.225 27 C -0.142 4.142 28 C -0.079 4.079 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.234 0.766 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.137 0.863 44 H 0.126 0.874 45 H 0.098 0.902 46 H 0.127 0.873 47 H 0.133 0.867 48 H 0.090 0.910 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.212 15.000 14.510 22.081 hybrid contribution 0.397 -0.910 -1.471 1.775 sum -6.815 14.090 13.039 20.371 Atomic orbital electron populations 1.21744 0.94403 1.01627 1.02181 1.21194 0.95656 0.99640 0.94387 0.91115 1.21644 0.95481 1.00157 0.98053 1.21554 0.95944 1.01364 0.96186 1.22209 1.00037 0.94997 0.91041 1.62289 1.09340 1.52151 1.01485 1.22809 1.01275 0.91545 0.93878 1.22612 0.81325 0.97238 0.95958 0.89242 1.86616 1.20960 1.77123 1.51888 1.23497 0.99656 0.81537 0.99716 1.85871 1.69108 1.24350 1.45365 1.18714 1.01845 0.92583 0.91415 1.20805 1.01287 0.99742 0.97492 1.20929 1.02932 0.94400 0.99194 1.17968 0.91901 0.92351 0.92616 1.19716 1.05887 1.13328 1.13907 0.90649 1.26729 0.94881 0.93907 1.02530 1.69882 1.08431 1.29442 1.38002 0.85195 0.77952 0.79636 0.76862 1.18700 1.19344 1.18307 1.20790 1.05848 0.99028 0.96857 1.19888 1.02754 0.92110 0.99467 1.22473 0.86512 1.00775 0.98099 0.93346 0.91836 0.92306 0.93142 0.90948 0.90710 0.91114 0.90407 0.95792 0.88564 0.88785 0.76610 0.91720 0.91995 0.86291 0.87409 0.90205 0.87320 0.86655 0.91045 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.20 71.98 0.66 -1.30 16 2 C -0.09 -1.42 2.88 -10.74 -0.03 -1.45 16 3 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.12 -1.77 5.29 30.68 0.16 -1.61 16 5 C -0.11 -1.73 6.09 30.64 0.19 -1.54 16 6 C 0.05 0.82 5.06 86.33 0.44 1.26 16 7 N -0.53 -9.82 4.86 -896.39 -4.35 -14.17 16 8 C 0.03 0.61 5.18 86.30 0.45 1.06 16 9 C 0.09 2.09 2.96 30.60 0.09 2.18 16 10 H 0.09 2.38 6.46 -2.39 -0.02 2.36 16 11 O -0.56 -13.24 9.75 -144.34 -1.41 -14.65 16 12 C 0.03 0.95 4.37 71.98 0.31 1.26 16 13 O -0.33 -13.20 10.09 -85.22 -0.86 -14.06 16 14 C 0.00 -0.08 6.71 22.79 0.15 0.08 16 15 C -0.17 -8.12 8.96 22.11 0.20 -7.93 16 16 C -0.15 -8.20 8.64 22.49 0.19 -8.01 16 17 C 0.05 2.95 5.57 -21.28 -0.12 2.84 16 18 C -0.50 -27.14 9.04 23.40 0.21 -26.93 16 19 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 20 C 0.03 1.69 5.13 85.23 0.44 2.13 16 21 N -0.83 -43.56 10.96 21.82 0.24 -43.32 16 22 Si 0.98 38.34 29.59 68.60 2.03 40.37 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 C -0.21 -10.40 9.74 22.48 0.22 -10.18 16 27 C -0.12 -5.82 9.92 22.11 0.22 -5.60 16 28 C 0.05 0.88 3.51 86.33 0.30 1.18 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.33 8.06 -2.38 -0.02 1.31 16 37 H 0.02 0.51 6.65 -2.39 -0.02 0.49 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16 40 H 0.38 6.69 9.05 -74.06 -0.67 6.02 16 41 H 0.06 1.76 7.64 -2.39 -0.02 1.74 16 42 H 0.06 1.78 7.66 -2.39 -0.02 1.76 16 43 H 0.12 4.76 6.27 -2.91 -0.02 4.75 16 44 H 0.11 5.90 6.16 -2.91 -0.02 5.88 16 45 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 46 H 0.11 5.12 8.06 -2.91 -0.02 5.09 16 47 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 48 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 49 H 0.06 1.31 5.58 -2.39 -0.01 1.29 16 Total: -1.00 -62.33 380.13 0.00 -62.33 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.26 Total: 36.05 kcal Atomic # 6 Polarization: -56.64 SS G_CDS: 4.09 Total: -52.56 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -4.12 Total: -57.49 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -2.27 Total: -28.71 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -62.33 0.00 -62.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604468290.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.432 kcal (2) G-P(sol) polarization free energy of solvation -62.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds