Wall clock time and date at job start Tue Mar 31 2020 14:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47431 * 2 1 4 4 N 1.46503 * 109.47447 * 119.99705 * 2 1 3 5 5 C 1.46498 * 120.00304 * 295.76689 * 4 2 1 6 6 C 1.50695 * 109.47428 * 89.99073 * 5 4 2 7 7 H 1.07995 * 120.00374 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99919 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00022 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00021 * 179.72655 * 8 6 5 11 11 H 1.48503 * 109.47423 * 180.27767 * 10 8 6 12 12 H 1.48497 * 109.47148 * 300.27804 * 10 8 6 13 13 H 1.48496 * 109.47191 * 60.27992 * 10 8 6 14 14 C 1.34777 * 119.99885 * 115.75359 * 4 2 1 15 15 O 1.21277 * 120.00242 * 185.23059 * 14 4 2 16 16 C 1.50703 * 120.00067 * 5.23790 * 14 4 2 17 17 C 1.53002 * 109.47120 * 184.42780 * 16 14 4 18 18 C 1.50703 * 109.46742 * 179.97438 * 17 16 14 19 19 C 1.34514 * 125.78932 * 90.00928 * 18 17 16 20 20 C 1.41381 * 106.83844 * 179.97438 * 19 18 17 21 21 C 1.34508 * 106.84412 * 359.97438 * 20 19 18 22 22 C 1.50704 * 125.79434 * 180.02562 * 21 20 19 23 23 H 1.09003 * 115.54431 * 334.41727 * 22 21 20 24 24 C 1.52994 * 117.50149 * 188.74720 * 22 21 20 25 25 C 1.52997 * 117.50040 * 120.08355 * 22 21 20 26 26 H 1.09002 * 117.49816 * 214.97991 * 25 22 21 27 27 C 1.52993 * 117.50065 * 0.02562 * 25 22 21 28 28 O 1.34308 * 125.78657 * 269.69185 * 18 17 16 29 29 H 1.09011 * 109.46985 * 305.37156 * 1 2 3 30 30 H 1.08999 * 109.47412 * 65.37039 * 1 2 3 31 31 H 1.08996 * 109.47386 * 185.37612 * 1 2 3 32 32 H 1.09003 * 109.47383 * 240.00116 * 2 1 3 33 33 H 1.09000 * 109.47095 * 174.06894 * 3 2 1 34 34 H 1.08995 * 109.46573 * 294.06962 * 3 2 1 35 35 H 1.09001 * 109.46945 * 54.06476 * 3 2 1 36 36 H 1.09005 * 109.46404 * 329.99112 * 5 4 2 37 37 H 1.09002 * 109.46754 * 209.99734 * 5 4 2 38 38 H 0.97003 * 120.00121 * 359.71284 * 9 8 6 39 39 H 1.08997 * 109.47012 * 304.43055 * 16 14 4 40 40 H 1.09001 * 109.47089 * 64.43312 * 16 14 4 41 41 H 1.08997 * 109.47403 * 300.00035 * 17 16 14 42 42 H 1.09001 * 109.46705 * 60.00296 * 17 16 14 43 43 H 1.07995 * 126.57983 * 0.02562 * 19 18 17 44 44 H 1.08002 * 126.57781 * 180.02562 * 20 19 18 45 45 H 1.09002 * 117.49913 * 359.97438 * 24 22 21 46 46 H 1.09003 * 117.49686 * 144.99224 * 24 22 21 47 47 H 1.08996 * 109.47747 * 59.99241 * 27 25 22 48 48 H 1.08998 * 109.47540 * 180.02562 * 27 25 22 49 49 H 1.09008 * 109.46914 * 300.00077 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7426 -0.1383 2.5248 6 6 0.4417 -0.6969 3.0410 7 1 -0.1231 -1.3939 2.4398 8 6 -0.0270 -0.3188 4.2813 9 7 0.6610 0.5296 5.0137 10 14 -1.6434 -1.0053 4.9179 11 1 -1.9253 -0.4417 6.2626 12 1 -2.7393 -0.6354 3.9866 13 1 -1.5507 -2.4845 5.0107 14 6 2.7212 -1.8341 1.0744 15 8 3.0439 -2.4560 2.0643 16 6 3.1062 -2.3400 -0.2920 17 6 3.7953 -3.6994 -0.1570 18 6 4.1798 -4.2055 -1.5234 19 6 5.3471 -3.9712 -2.1494 20 6 5.2817 -4.6305 -3.3983 21 6 4.0786 -5.2288 -3.4607 22 6 3.5624 -6.0523 -4.6124 23 1 3.9957 -5.8227 -5.5859 24 6 2.0926 -6.4755 -4.5754 25 6 3.1937 -7.5099 -4.3293 26 1 3.3840 -8.2393 -5.1167 27 6 3.3767 -8.0199 -2.8985 28 8 3.4173 -4.9720 -2.3202 29 1 -0.3633 0.5950 0.8381 30 1 -0.3634 0.4283 -0.9341 31 1 -0.3634 -1.0231 0.0963 32 1 1.8933 -0.5138 -0.8900 33 1 3.1249 1.4443 0.1062 34 1 1.7660 1.9247 -0.9383 35 1 1.5926 1.9861 0.8321 36 1 1.6714 0.9475 2.4592 37 1 2.5499 -0.4089 3.2054 38 1 1.5003 0.8863 4.6830 39 1 2.2117 -2.4454 -0.9057 40 1 3.7884 -1.6320 -0.7626 41 1 4.6899 -3.5939 0.4568 42 1 3.1131 -4.4073 0.3136 43 1 6.1756 -3.3914 -1.7702 44 1 6.0506 -4.6507 -4.1565 45 1 1.4990 -6.1586 -3.7179 46 1 1.5589 -6.5242 -5.5246 47 1 2.7599 -7.4299 -2.2207 48 1 3.0774 -9.0666 -2.8447 49 1 4.4240 -7.9265 -2.6107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608813815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:33 Heat of formation + Delta-G solvation = -34.366247 kcal Electronic energy + Delta-G solvation = -27026.380585 eV Core-core repulsion = 23340.659154 eV Total energy + Delta-G solvation = -3685.721431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 9.24 seconds Orbital eigenvalues (eV) -43.61277 -40.98835 -38.68724 -37.76259 -35.42934 -34.86912 -33.76490 -32.46383 -30.59337 -29.49694 -28.54411 -28.10362 -26.08036 -24.59875 -23.07798 -22.84328 -22.62073 -21.55422 -20.64859 -19.87692 -18.87714 -18.46995 -17.31887 -17.12385 -16.94004 -16.53809 -16.36910 -15.68768 -15.50322 -15.33950 -14.96744 -14.54831 -14.33609 -14.17816 -14.03623 -13.90663 -13.73432 -13.63082 -13.56559 -13.38246 -13.14889 -13.01810 -12.95683 -12.75178 -12.61602 -12.40115 -12.38732 -12.22448 -12.13882 -11.98592 -11.74064 -11.52200 -11.12597 -10.98362 -10.78893 -10.66400 -10.58142 -9.47677 -9.11406 -8.64819 -6.38416 0.68077 1.47305 1.56275 1.61604 1.72594 1.75493 1.86881 2.28052 2.54064 2.89155 3.12867 3.39828 3.58849 3.75436 3.82638 3.86944 3.91065 4.00065 4.09790 4.16578 4.19579 4.31297 4.35264 4.41617 4.45551 4.65679 4.71395 4.76220 4.78219 4.82626 4.85161 4.85771 4.89416 4.92929 4.94999 4.97179 5.01673 5.04250 5.11445 5.15196 5.20535 5.30537 5.38720 5.46853 5.63111 5.64485 5.87892 6.19200 6.25539 6.49723 6.69850 7.29797 7.42720 8.69827 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.002823 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.707116 B = 9917.360788 C =10417.032657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.124 3.876 3 C -0.155 4.155 4 N -0.595 5.595 5 C 0.251 3.749 6 C -0.599 4.599 7 H 0.044 0.956 8 C -0.034 4.034 9 N -0.936 5.936 10 Si 1.113 2.887 11 H -0.280 1.280 12 H -0.263 1.263 13 H -0.282 1.282 14 C 0.495 3.505 15 O -0.595 6.595 16 C -0.117 4.117 17 C -0.016 4.016 18 C -0.023 4.023 19 C -0.205 4.205 20 C -0.211 4.211 21 C 0.011 3.989 22 C -0.089 4.089 23 H 0.159 0.841 24 C -0.169 4.169 25 C -0.135 4.135 26 H 0.138 0.862 27 C -0.128 4.128 28 O -0.188 6.188 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.038 0.962 36 H 0.023 0.977 37 H -0.014 1.014 38 H 0.254 0.746 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.162 0.838 44 H 0.169 0.831 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.039 0.961 48 H 0.075 0.925 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -10.091 -25.881 28.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.213 4.213 4 N -0.325 5.325 5 C 0.129 3.871 6 C -0.638 4.638 7 H 0.062 0.938 8 C -0.232 4.232 9 N -0.573 5.573 10 Si 0.935 3.065 11 H -0.206 1.206 12 H -0.187 1.187 13 H -0.208 1.208 14 C 0.284 3.716 15 O -0.477 6.477 16 C -0.157 4.157 17 C -0.054 4.054 18 C -0.072 4.072 19 C -0.224 4.224 20 C -0.230 4.230 21 C -0.038 4.038 22 C -0.107 4.107 23 H 0.176 0.824 24 C -0.206 4.206 25 C -0.153 4.153 26 H 0.156 0.844 27 C -0.185 4.185 28 O -0.085 6.085 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.004 0.996 38 H 0.063 0.937 39 H 0.123 0.877 40 H 0.140 0.860 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.179 0.821 44 H 0.187 0.813 45 H 0.099 0.901 46 H 0.143 0.857 47 H 0.058 0.942 48 H 0.094 0.906 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.023 -10.435 -24.027 26.672 hybrid contribution 1.338 0.290 -0.392 1.424 sum 6.361 -10.145 -24.419 27.197 Atomic orbital electron populations 1.22077 0.94933 1.01447 1.02387 1.21452 0.95022 0.94315 0.87029 1.22110 1.01042 0.95048 1.03080 1.48243 1.52273 1.24023 1.07993 1.18779 0.94648 0.93254 0.80428 1.22480 1.07342 1.29023 1.04935 0.93753 1.27222 1.06746 0.95190 0.94033 1.70925 1.15611 1.30783 1.40019 0.82980 0.71684 0.75535 0.76301 1.20573 1.18743 1.20822 1.21304 0.77785 0.80362 0.92115 1.90647 1.57459 1.57428 1.42130 1.21631 1.03265 0.97724 0.93055 1.19678 1.02243 0.95001 0.88484 1.22278 0.91945 0.98596 0.94402 1.21832 0.98821 1.05698 0.96045 1.21750 0.98342 1.03276 0.99635 1.21862 0.92623 1.02250 0.87096 1.20872 0.99876 0.95303 0.94600 0.82377 1.23248 0.90445 1.02535 1.04323 1.22613 1.02403 0.91007 0.99241 0.84418 1.21383 1.01180 1.01592 0.94328 1.83940 1.43624 1.55546 1.25418 0.93987 0.88965 0.94215 0.86633 0.92424 0.88228 0.94326 0.95954 0.99596 0.93656 0.87668 0.86002 0.88382 0.91542 0.82081 0.81340 0.90112 0.85721 0.94213 0.90606 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 8.41 71.98 0.61 -4.24 16 2 C 0.12 3.86 3.15 44.99 0.14 4.00 16 3 C -0.16 -4.26 8.93 71.98 0.64 -3.62 16 4 N -0.59 -25.21 2.39 -802.14 -1.92 -27.12 16 5 C 0.25 13.44 4.01 85.63 0.34 13.78 16 6 C -0.60 -34.91 8.01 25.60 0.21 -34.70 16 7 H 0.04 2.60 7.54 -2.91 -0.02 2.58 16 8 C -0.03 -2.03 5.46 84.66 0.46 -1.57 16 9 N -0.94 -58.99 13.65 21.45 0.29 -58.70 16 10 Si 1.11 52.38 29.90 68.60 2.05 54.44 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 C 0.50 20.65 7.65 87.66 0.67 21.32 16 15 O -0.60 -31.00 15.62 -3.02 -0.05 -31.05 16 16 C -0.12 -3.33 4.07 29.85 0.12 -3.21 16 17 C -0.02 -0.47 5.05 29.85 0.15 -0.32 16 18 C -0.02 -0.58 6.57 24.83 0.16 -0.42 16 19 C -0.20 -4.53 10.81 22.19 0.24 -4.29 16 20 C -0.21 -4.16 10.81 22.19 0.24 -3.92 16 21 C 0.01 0.24 5.90 24.83 0.15 0.39 16 22 C -0.09 -1.29 6.23 -11.54 -0.07 -1.36 16 23 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 24 C -0.17 -2.37 9.82 30.62 0.30 -2.07 16 25 C -0.13 -1.79 6.41 -10.77 -0.07 -1.85 16 26 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 27 C -0.13 -2.19 9.15 71.98 0.66 -1.53 16 28 O -0.19 -4.91 9.61 -2.58 -0.02 -4.93 16 29 H 0.04 1.64 7.31 -2.38 -0.02 1.62 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.12 2.73 5.77 -2.39 -0.01 2.72 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.27 6.83 -2.39 -0.02 1.26 16 36 H 0.02 1.21 6.22 -2.38 -0.01 1.19 16 37 H -0.01 -0.86 7.36 -2.39 -0.02 -0.88 16 38 H 0.25 16.19 7.22 -92.71 -0.67 15.52 16 39 H 0.11 2.69 7.40 -2.39 -0.02 2.67 16 40 H 0.12 2.75 8.07 -2.39 -0.02 2.73 16 41 H 0.10 2.85 8.05 -2.39 -0.02 2.83 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 44 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.08 1.50 7.87 -2.39 -0.02 1.48 16 46 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.04 0.85 7.26 -2.39 -0.02 0.83 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -77.77 397.30 6.32 -71.44 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 1.02 Total: 19.53 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 4.95 Total: -23.61 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.62 Total: -85.82 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.07 Total: -35.98 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.05 Total: 54.44 kcal Total: -77.77 6.32 -71.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608813815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.076 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.25 seconds