Wall clock time and date at job start Tue Mar 31 2020 14:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47544 * 2 1 4 4 N 1.46505 * 109.47123 * 119.99870 * 2 1 3 5 5 C 1.46496 * 119.99896 * 299.99932 * 4 2 1 6 6 C 1.50705 * 109.47066 * 269.99622 * 5 4 2 7 7 H 1.08001 * 119.99987 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00059 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00144 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47035 * 89.99867 * 10 8 6 12 12 H 1.48496 * 109.47390 * 210.00116 * 10 8 6 13 13 H 1.48496 * 109.47004 * 330.00404 * 10 8 6 14 14 C 1.34779 * 120.00050 * 119.99872 * 4 2 1 15 15 O 1.21273 * 120.00093 * 180.02562 * 14 4 2 16 16 C 1.50706 * 119.99767 * 359.97438 * 14 4 2 17 17 C 1.53000 * 109.46735 * 180.02562 * 16 14 4 18 18 C 1.50703 * 109.46912 * 180.02562 * 17 16 14 19 19 C 1.34510 * 125.78886 * 89.72067 * 18 17 16 20 20 C 1.41384 * 106.84002 * 179.89033 * 19 18 17 21 21 C 1.34518 * 106.83852 * 0.36937 * 20 19 18 22 22 C 1.50706 * 125.78706 * 179.75414 * 21 20 19 23 23 H 1.09002 * 115.55073 * 25.58083 * 22 21 20 24 24 C 1.52998 * 117.49582 * 171.25311 * 22 21 20 25 25 C 1.53005 * 117.49501 * 239.91190 * 22 21 20 26 26 H 1.08996 * 117.49636 * 145.02413 * 25 22 21 27 27 C 1.52996 * 117.50084 * 0.02562 * 25 22 21 28 28 O 1.34295 * 108.42175 * 359.77186 * 21 20 19 29 29 H 1.09000 * 109.46993 * 300.00067 * 1 2 3 30 30 H 1.09000 * 109.46852 * 59.99734 * 1 2 3 31 31 H 1.08993 * 109.47553 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46993 * 239.99932 * 2 1 3 33 33 H 1.08996 * 109.47415 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46614 * 299.99740 * 3 2 1 35 35 H 1.08997 * 109.47486 * 59.99749 * 3 2 1 36 36 H 1.08998 * 109.47205 * 29.99486 * 5 4 2 37 37 H 1.08997 * 109.47416 * 150.00347 * 5 4 2 38 38 H 0.97001 * 120.00292 * 180.02562 * 9 8 6 39 39 H 1.09001 * 109.46797 * 60.00350 * 16 14 4 40 40 H 1.08992 * 109.47518 * 300.00347 * 16 14 4 41 41 H 1.09002 * 109.47398 * 300.00410 * 17 16 14 42 42 H 1.09001 * 109.47194 * 60.00591 * 17 16 14 43 43 H 1.07994 * 126.58284 * 0.02562 * 19 18 17 44 44 H 1.08004 * 126.58094 * 180.12078 * 20 19 18 45 45 H 1.09002 * 117.49489 * 214.97505 * 24 22 21 46 46 H 1.09000 * 117.50114 * 359.97438 * 24 22 21 47 47 H 1.08996 * 109.47022 * 59.99603 * 27 25 22 48 48 H 1.09001 * 109.47264 * 180.02562 * 27 25 22 49 49 H 1.09002 * 109.46986 * 300.00391 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5267 6 6 2.7033 0.8018 2.9830 7 1 3.5429 1.0362 2.3454 8 6 2.5813 1.4109 4.2139 9 7 1.5586 1.1258 4.9901 10 14 3.8685 2.6409 4.7791 11 1 3.4753 4.0048 4.3425 12 1 3.9705 2.6054 6.2601 13 1 5.1830 2.2904 4.1838 14 6 2.7932 -1.7864 1.0726 15 8 3.1970 -2.3584 2.0628 16 6 3.1567 -2.3017 -0.2962 17 6 4.0359 -3.5460 -0.1557 18 6 4.4000 -4.0609 -1.5245 19 6 5.4784 -3.6960 -2.2410 20 6 5.4290 -4.4214 -3.4535 21 6 4.3190 -5.1800 -3.4089 22 6 3.8498 -6.1197 -4.4896 23 1 4.6291 -6.5101 -5.1441 24 6 2.6746 -7.0429 -4.1617 25 6 2.4751 -5.8558 -5.1073 26 1 2.3499 -6.0730 -6.1681 27 6 1.6823 -4.6578 -4.5810 28 8 3.6998 -4.9575 -2.2382 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6768 1.9564 0.8899 36 1 0.6905 0.2975 2.4843 37 1 1.6238 -1.0225 3.2292 38 1 1.4726 1.5546 5.8559 39 1 3.7016 -1.5310 -0.8415 40 1 2.2483 -2.5587 -0.8408 41 1 4.9445 -3.2893 0.3891 42 1 3.4907 -4.3164 0.3894 43 1 6.2375 -2.9869 -1.9457 44 1 6.1431 -4.3725 -4.2623 45 1 2.6806 -8.0406 -4.6008 46 1 2.2411 -6.9709 -3.1642 47 1 2.2527 -3.7438 -4.7464 48 1 0.7301 -4.5926 -5.1075 49 1 1.4993 -4.7837 -3.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608813817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:56 Heat of formation + Delta-G solvation = -14.178668 kcal Electronic energy + Delta-G solvation = -27111.697042 eV Core-core repulsion = 23426.851010 eV Total energy + Delta-G solvation = -3684.846032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.67243 -39.24969 -38.02047 -36.04396 -33.86476 -32.91097 -32.65670 -30.81903 -29.52270 -28.55222 -27.24389 -26.70850 -24.80652 -22.78988 -22.00661 -21.95134 -21.17502 -20.71781 -19.78323 -17.95780 -17.06448 -16.45981 -16.39295 -16.09725 -15.71188 -15.15289 -15.03632 -14.45402 -14.25528 -13.49115 -13.47163 -13.42117 -13.26493 -13.15969 -12.88842 -12.66799 -12.40805 -12.33895 -12.08821 -12.06189 -11.91401 -11.73538 -11.62571 -11.50476 -11.15192 -10.99723 -10.85865 -10.84312 -10.81163 -10.54231 -10.35818 -10.33586 -10.00180 -9.83167 -9.52807 -8.91020 -8.40636 -8.18074 -7.63314 -6.01848 -4.05059 1.61748 2.54563 2.78742 3.30462 3.37421 3.39857 3.45973 3.54153 3.93261 4.21967 4.37814 4.46090 4.55409 4.73077 5.00160 5.01810 5.05362 5.13439 5.19238 5.28660 5.31823 5.35867 5.38066 5.47653 5.55809 5.57620 5.65193 5.67853 5.69051 5.77289 5.81571 5.86122 5.98174 6.02265 6.09523 6.10911 6.17231 6.23692 6.28494 6.37633 6.52798 6.60979 6.96672 7.13196 7.19333 7.49293 7.59141 7.95092 8.27479 8.46463 8.93269 9.11551 9.59044 11.06343 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.002788 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.032437 B =10041.078776 C =10583.381986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.592 5.592 5 C 0.246 3.754 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.505 3.495 15 O -0.543 6.543 16 C -0.136 4.136 17 C -0.024 4.024 18 C 0.001 3.999 19 C -0.211 4.211 20 C -0.203 4.203 21 C 0.014 3.986 22 C -0.081 4.081 23 H 0.131 0.869 24 C -0.168 4.168 25 C -0.139 4.139 26 H 0.111 0.889 27 C -0.126 4.126 28 O -0.170 6.170 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.262 0.738 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 -10.810 -21.847 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.324 5.324 5 C 0.126 3.874 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.292 3.708 15 O -0.421 6.421 16 C -0.177 4.177 17 C -0.062 4.062 18 C -0.049 4.049 19 C -0.230 4.230 20 C -0.222 4.222 21 C -0.036 4.036 22 C -0.099 4.099 23 H 0.149 0.851 24 C -0.205 4.205 25 C -0.157 4.157 26 H 0.129 0.871 27 C -0.183 4.183 28 O -0.067 6.067 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.217 -11.183 -21.024 23.844 hybrid contribution 0.972 0.918 0.221 1.355 sum 2.189 -10.265 -20.803 23.301 Atomic orbital electron populations 1.22156 0.95633 1.01767 1.02437 1.21003 0.94087 0.94151 0.87973 1.22138 1.01346 0.95718 1.02286 1.48329 1.49040 1.26369 1.08650 1.19235 0.95867 0.94975 0.77274 1.21438 1.08883 1.23304 1.02048 0.92394 1.24926 0.95757 0.97151 0.96368 1.69930 1.29572 1.43285 1.10734 0.86553 0.82052 0.81249 0.77913 1.20723 1.21181 1.19937 1.20221 0.79280 0.81045 0.90274 1.90673 1.53512 1.58218 1.39711 1.21698 1.00937 0.97900 0.97118 1.19898 1.02032 0.96732 0.87521 1.22570 0.93135 0.93552 0.95670 1.21569 1.00873 1.05177 0.95366 1.21431 0.99753 1.01021 1.00005 1.21184 0.94287 1.01528 0.86623 1.20575 0.92677 0.99774 0.96854 0.85101 1.23211 1.00803 0.95124 1.01359 1.22516 0.96561 0.97959 0.98684 0.87077 1.21383 0.99208 0.96277 1.01413 1.83937 1.46892 1.50298 1.25612 0.91298 0.92303 0.92945 0.90721 0.92754 0.93305 0.90059 0.94830 0.94081 0.92816 0.89123 0.89465 0.87922 0.89393 0.83476 0.83818 0.88105 0.87982 0.92074 0.91964 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.17 37.16 0.34 -2.03 16 2 C 0.13 2.14 3.17 -67.93 -0.22 1.93 16 3 C -0.16 -2.57 8.47 37.16 0.31 -2.26 16 4 N -0.59 -12.25 2.39 -167.47 -0.40 -12.65 16 5 C 0.25 6.28 4.60 -5.19 -0.02 6.26 16 6 C -0.52 -14.29 7.83 -34.44 -0.27 -14.56 16 7 H 0.06 1.60 7.63 -52.49 -0.40 1.20 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 10 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.51 10.27 7.67 -10.98 -0.08 10.18 16 15 O -0.54 -13.35 15.56 5.56 0.09 -13.26 16 16 C -0.14 -2.01 3.99 -27.88 -0.11 -2.12 16 17 C -0.02 -0.35 5.04 -27.88 -0.14 -0.49 16 18 C 0.00 0.01 6.57 -35.62 -0.23 -0.22 16 19 C -0.21 -2.59 10.81 -39.70 -0.43 -3.02 16 20 C -0.20 -2.29 10.81 -39.70 -0.43 -2.72 16 21 C 0.01 0.16 5.90 -35.62 -0.21 -0.05 16 22 C -0.08 -0.69 6.24 -91.77 -0.57 -1.26 16 23 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 24 C -0.17 -1.32 9.82 -26.69 -0.26 -1.59 16 25 C -0.14 -1.07 6.41 -90.58 -0.58 -1.65 16 26 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 27 C -0.13 -1.09 9.15 37.16 0.34 -0.75 16 28 O -0.17 -2.25 9.63 5.72 0.06 -2.20 16 29 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.01 5.77 -51.93 -0.30 0.71 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.57 6.92 -51.93 -0.36 1.22 16 36 H 0.03 0.87 6.43 -51.93 -0.33 0.54 16 37 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.09 1.21 7.79 -51.93 -0.40 0.81 16 40 H 0.09 1.15 7.79 -51.93 -0.40 0.75 16 41 H 0.10 1.49 8.10 -51.93 -0.42 1.07 16 42 H 0.09 1.31 8.10 -51.93 -0.42 0.89 16 43 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.94 7.88 -51.93 -0.41 0.53 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.63 7.27 -51.93 -0.38 0.25 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -32.36 398.26 -9.55 -41.91 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.35 Total: 1.94 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -2.66 Total: -12.77 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.34 Total: -38.37 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.14 Total: -15.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.36 -9.55 -41.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608813817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.734 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds