Wall clock time and date at job start Tue Mar 31 2020 12:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.52996 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47094 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99588 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47129 * 90.00082 * 13 12 10 15 15 H 1.08004 * 120.00054 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00029 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99836 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47286 * 60.00200 * 18 16 14 20 20 H 1.48504 * 109.46822 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47430 * 300.00019 * 18 16 14 22 22 C 1.46492 * 120.00506 * 0.02562 * 12 10 9 23 23 C 1.52999 * 109.47359 * 119.99453 * 22 12 10 24 24 C 1.52999 * 109.47104 * 240.00249 * 22 12 10 25 25 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 28 28 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 30 30 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 33 33 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 34 34 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 35 35 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 36 36 H 1.08997 * 109.47037 * 300.00424 * 9 8 7 37 37 H 1.09000 * 109.46839 * 60.00324 * 9 8 7 38 38 H 1.08995 * 109.46831 * 210.00061 * 13 12 10 39 39 H 1.09004 * 109.47224 * 330.00339 * 13 12 10 40 40 H 0.96999 * 119.99994 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.46975 * 359.97438 * 22 12 10 42 42 H 1.09007 * 109.46624 * 60.00015 * 23 22 12 43 43 H 1.08998 * 109.47304 * 179.97438 * 23 22 12 44 44 H 1.08998 * 109.47419 * 300.00428 * 23 22 12 45 45 H 1.08995 * 109.47736 * 59.99919 * 24 22 12 46 46 H 1.08998 * 109.47151 * 179.97438 * 24 22 12 47 47 H 1.09003 * 109.47104 * 299.99242 * 24 22 12 48 48 H 1.08001 * 119.97259 * 179.69844 * 25 6 5 49 49 H 1.07992 * 120.02912 * 180.24892 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9107 6.8382 -1.4382 10 6 5.1387 7.2871 -2.8586 11 8 4.7808 6.5857 -3.7811 12 7 5.7402 8.4680 -3.1038 13 6 5.9613 8.9046 -4.4847 14 6 4.7712 9.6995 -4.9568 15 1 3.9337 9.8627 -4.2947 16 6 4.7515 10.2183 -6.2342 17 7 5.7711 10.0191 -7.0405 18 14 3.2760 11.2030 -6.8196 19 1 3.0959 12.3910 -5.9470 20 1 3.5007 11.6467 -8.2189 21 1 2.0588 10.3546 -6.7582 22 6 6.1730 9.3149 -1.9897 23 6 7.6854 9.5314 -2.0711 24 6 5.4593 10.6659 -2.0689 25 6 1.9209 3.6048 0.0081 26 6 1.2914 2.3752 0.0014 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 4.0208 0.3801 -0.0005 31 1 5.1344 2.5752 -0.0008 32 1 3.3580 5.7459 0.5176 33 1 4.9441 4.9378 0.5160 34 1 4.8445 4.7475 -1.9543 35 1 3.2585 5.5555 -1.9527 36 1 4.2826 7.5651 -0.9233 37 1 5.8689 6.7577 -0.9248 38 1 6.8550 9.5268 -4.5303 39 1 6.0927 8.0323 -5.1250 40 1 5.7574 10.3844 -7.9390 41 1 5.9256 8.8285 -1.0461 42 1 7.9325 10.0180 -3.0147 43 1 8.0074 10.1620 -1.2424 44 1 8.1939 8.5689 -2.0147 45 1 4.3819 10.5117 -2.0107 46 1 5.7810 11.2960 -1.2396 47 1 5.7064 11.1526 -3.0124 48 1 1.3340 4.5114 0.0143 49 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814544.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:36 Heat of formation + Delta-G solvation = -88.947699 kcal Electronic energy + Delta-G solvation = -26354.963567 eV Core-core repulsion = 22666.875307 eV Total energy + Delta-G solvation = -3688.088260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.09409 -40.77736 -38.75501 -37.56069 -35.50553 -34.85518 -32.36822 -32.07299 -31.73250 -29.61389 -28.47103 -27.94976 -27.03246 -24.94242 -23.61288 -23.21784 -22.41089 -21.59718 -19.42550 -19.07817 -18.59044 -18.06469 -17.27860 -16.92761 -16.63898 -16.56718 -16.36542 -15.93306 -15.35305 -15.10723 -14.81743 -14.70100 -14.58498 -14.38014 -14.17960 -13.99263 -13.78678 -13.39123 -13.31339 -13.09566 -12.85722 -12.85505 -12.77565 -12.58868 -12.57823 -12.48479 -12.19153 -12.08483 -11.95802 -11.77715 -11.74278 -11.58706 -11.46676 -11.45999 -10.60364 -10.47555 -9.92961 -9.36588 -9.00461 -8.18422 -6.30407 0.41549 0.46840 1.35137 1.39329 1.46190 1.93134 2.34136 2.39751 2.49530 2.81335 3.10863 3.76764 3.85045 3.87151 3.98103 4.05325 4.14970 4.29915 4.34363 4.36011 4.36921 4.47854 4.49016 4.51044 4.62363 4.68482 4.74148 4.76792 4.81163 4.89326 4.92638 4.99088 5.06816 5.09773 5.10089 5.15771 5.26604 5.27375 5.36306 5.43160 5.46768 5.48752 5.61397 5.66885 5.77050 5.87541 5.94237 6.13513 6.46054 6.76299 6.91496 7.33652 7.58873 8.88609 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015536 B = 0.002471 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.807584 B =11327.411994 C =12350.157057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.102 3.898 4 C -0.166 4.166 5 C -0.084 4.084 6 C -0.125 4.125 7 C -0.065 4.065 8 C -0.091 4.091 9 C -0.125 4.125 10 C 0.488 3.512 11 O -0.605 6.605 12 N -0.600 5.600 13 C 0.263 3.737 14 C -0.524 4.524 15 H 0.053 0.947 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.259 1.259 20 H -0.281 1.281 21 H -0.279 1.279 22 C 0.125 3.875 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.088 4.088 26 C -0.213 4.213 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.024 0.976 39 H -0.013 1.013 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.034 0.966 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.090 0.910 47 H 0.039 0.961 48 H 0.137 0.863 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.304 -11.348 22.559 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.058 3.942 4 C -0.185 4.185 5 C -0.102 4.102 6 C -0.125 4.125 7 C -0.102 4.102 8 C -0.129 4.129 9 C -0.165 4.165 10 C 0.278 3.722 11 O -0.487 6.487 12 N -0.331 5.331 13 C 0.142 3.858 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.786 3.214 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.205 1.205 22 C 0.022 3.978 23 C -0.215 4.215 24 C -0.210 4.210 25 C -0.106 4.106 26 C -0.232 4.232 27 H 0.077 0.923 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.042 0.958 39 H 0.005 0.995 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.053 0.947 43 H 0.116 0.884 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.109 0.891 47 H 0.058 0.942 48 H 0.155 0.845 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.327 -11.834 21.913 25.467 hybrid contribution -0.884 0.504 -1.446 1.768 sum -6.211 -11.330 20.467 24.204 Atomic orbital electron populations 1.23302 0.76704 1.05452 1.02048 1.86028 1.23288 1.27029 1.88915 1.19268 0.92844 0.84635 0.97502 1.20663 0.91701 0.99314 1.06799 1.21144 1.00857 0.90857 0.97296 1.20054 0.93844 0.96018 1.02630 1.20533 1.01693 0.92698 0.95245 1.21219 0.99834 0.94902 0.96926 1.21746 1.04505 0.98937 0.91291 1.21664 0.76854 0.80665 0.93007 1.90635 1.52982 1.56067 1.49037 1.48422 1.57651 1.18999 1.08047 1.18604 0.95795 0.92986 0.78454 1.21633 1.03686 1.32412 0.98501 0.92831 1.25833 0.99093 0.97839 0.96734 1.70050 1.32342 1.46842 1.07975 0.85565 0.79178 0.79077 0.77593 1.18384 1.20642 1.20521 1.21436 0.94956 0.91841 0.89521 1.22127 0.94619 1.02290 1.02454 1.22084 0.99888 0.96791 1.02276 1.21146 0.94459 0.97683 0.97283 1.21452 1.00935 0.92168 1.08600 0.92338 0.86326 0.91616 0.84602 0.83732 0.89242 0.88791 0.93329 0.93903 0.86738 0.86040 0.95849 0.99469 0.92675 0.86040 0.94708 0.88420 0.92412 0.93733 0.89149 0.94156 0.84477 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.04 10.50 -92.47 -0.97 -8.01 16 3 C 0.10 2.28 6.69 22.51 0.15 2.43 16 4 C -0.17 -3.61 9.99 22.37 0.22 -3.38 16 5 C -0.08 -1.71 9.69 22.25 0.22 -1.49 16 6 C -0.13 -2.59 5.14 -19.85 -0.10 -2.69 16 7 C -0.06 -1.14 5.34 29.85 0.16 -0.98 16 8 C -0.09 -2.36 4.49 30.59 0.14 -2.23 16 9 C -0.13 -3.21 4.01 29.85 0.12 -3.09 16 10 C 0.49 20.23 7.67 87.66 0.67 20.90 16 11 O -0.61 -32.25 15.56 -3.03 -0.05 -32.30 16 12 N -0.60 -25.22 2.39 -802.15 -1.91 -27.13 16 13 C 0.26 14.35 4.60 85.63 0.39 14.74 16 14 C -0.52 -30.21 7.83 25.60 0.20 -30.01 16 15 H 0.05 3.05 7.63 -2.91 -0.02 3.03 16 16 C 0.00 0.19 5.46 84.66 0.46 0.65 16 17 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 18 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 C 0.12 3.70 3.17 44.99 0.14 3.85 16 23 C -0.16 -4.22 9.17 71.98 0.66 -3.56 16 24 C -0.15 -4.68 8.47 71.98 0.61 -4.07 16 25 C -0.09 -1.80 9.69 22.25 0.22 -1.58 16 26 C -0.21 -4.31 9.04 22.37 0.20 -4.11 16 27 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 28 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.09 1.27 8.08 -2.39 -0.02 1.26 16 33 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 34 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.04 1.34 8.10 -2.38 -0.02 1.32 16 36 H 0.11 2.35 7.79 -2.39 -0.02 2.33 16 37 H 0.12 2.27 7.79 -2.39 -0.02 2.26 16 38 H 0.02 1.31 6.43 -2.39 -0.02 1.29 16 39 H -0.01 -0.82 7.42 -2.38 -0.02 -0.84 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.12 2.53 5.77 -2.39 -0.01 2.52 16 42 H 0.03 1.16 6.66 -2.38 -0.02 1.14 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.04 1.56 6.92 -2.39 -0.02 1.54 16 48 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 49 H 0.14 2.22 6.30 -2.91 -0.02 2.21 16 Total: -1.00 -80.31 396.43 5.87 -74.44 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.91 Total: 15.77 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.58 Total: -13.27 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.63 Total: -84.32 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.02 Total: -40.31 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -80.31 5.87 -74.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814544.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.508 kcal (2) G-P(sol) polarization free energy of solvation -80.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds