Wall clock time and date at job start Tue Mar 31 2020 12:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 N 1.46494 * 109.47349 * 120.00207 * 2 1 3 5 5 C 1.46496 * 120.00028 * 300.00339 * 4 2 1 6 6 C 1.50706 * 109.46980 * 269.99436 * 5 4 2 7 7 H 1.08004 * 119.99946 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00336 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00187 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00161 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47280 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47277 * 120.00294 * 10 8 6 13 13 H 1.48501 * 109.46955 * 239.99897 * 10 8 6 14 14 C 1.34780 * 119.99789 * 119.99401 * 4 2 1 15 15 O 1.21278 * 119.99653 * 180.02562 * 14 4 2 16 16 C 1.50696 * 120.00288 * 0.02562 * 14 4 2 17 17 C 1.53001 * 109.47413 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47162 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.46972 * 180.02562 * 18 17 16 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.09001 * 109.46576 * 299.99981 * 1 2 3 28 28 H 1.09003 * 109.47223 * 59.99430 * 1 2 3 29 29 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47029 * 240.00301 * 2 1 3 31 31 H 1.08997 * 109.47184 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47491 * 300.00406 * 3 2 1 33 33 H 1.09001 * 109.46876 * 60.00208 * 3 2 1 34 34 H 1.08998 * 109.47699 * 29.99234 * 5 4 2 35 35 H 1.09003 * 109.47639 * 149.99963 * 5 4 2 36 36 H 0.97000 * 120.00766 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.47066 * 59.99574 * 16 14 4 38 38 H 1.08993 * 109.46997 * 299.99830 * 16 14 4 39 39 H 1.09001 * 109.46447 * 60.00042 * 17 16 14 40 40 H 1.09005 * 109.47034 * 300.00353 * 17 16 14 41 41 H 1.09005 * 109.47112 * 60.00208 * 18 17 16 42 42 H 1.08993 * 109.47202 * 300.00311 * 18 17 16 43 43 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 44 44 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 45 45 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 46 46 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 49 49 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8017 2.9830 7 1 3.5429 1.0362 2.3454 8 6 2.5813 1.4106 4.2139 9 7 1.5587 1.1255 4.9902 10 14 3.8686 2.6406 4.7792 11 1 4.9101 2.7843 3.7305 12 1 3.2237 3.9562 5.0208 13 1 4.4956 2.1585 6.0361 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0625 16 6 3.1576 -2.3010 -0.2964 17 6 4.0376 -3.5448 -0.1562 18 6 4.4070 -4.0675 -1.5458 19 8 5.2284 -5.2295 -1.4148 20 6 5.6319 -5.7995 -2.6614 21 6 6.4897 -7.0119 -2.4052 22 6 5.9057 -8.2594 -2.2878 23 6 6.6926 -9.3715 -2.0534 24 6 8.0633 -9.2363 -1.9368 25 6 8.6467 -7.9881 -2.0488 26 6 7.8604 -6.8766 -2.2879 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.6905 0.2973 2.4844 35 1 1.6239 -1.0227 3.2291 36 1 1.4726 1.5541 5.8561 37 1 3.7028 -1.5302 -0.8411 38 1 2.2494 -2.5577 -0.8417 39 1 3.4926 -4.3157 0.3886 40 1 4.9458 -3.2877 0.3891 41 1 4.9517 -3.2966 -2.0910 42 1 3.4986 -4.3246 -2.0905 43 1 6.2026 -5.0647 -3.2293 44 1 4.7491 -6.0922 -3.2298 45 1 4.8348 -8.3651 -2.3794 46 1 6.2363 -10.3461 -1.9613 47 1 8.6780 -10.1053 -1.7540 48 1 9.7172 -7.8818 -1.9533 49 1 8.3166 -5.9021 -2.3803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:50 Heat of formation + Delta-G solvation = -72.364398 kcal Electronic energy + Delta-G solvation = -25993.428216 eV Core-core repulsion = 22306.059062 eV Total energy + Delta-G solvation = -3687.369154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.63175 -39.23782 -37.83422 -35.98587 -33.70075 -32.75692 -31.87153 -31.16221 -30.79261 -28.22530 -26.79734 -26.55959 -25.47014 -22.95468 -22.84645 -21.75856 -21.45388 -20.90738 -17.98342 -17.16727 -16.86507 -16.51967 -16.36324 -16.29273 -15.59224 -15.37458 -15.02173 -14.58696 -14.29164 -14.12006 -13.69415 -13.47166 -13.43714 -13.20146 -12.98366 -12.57891 -12.46953 -12.32067 -11.96371 -11.80583 -11.66925 -11.56186 -11.30537 -11.21985 -11.16149 -11.00061 -10.90677 -10.80301 -10.71045 -10.53372 -10.33788 -9.97931 -9.73425 -9.49517 -9.17562 -9.10237 -8.82795 -8.39319 -7.60189 -6.00402 -4.03421 1.00183 1.14680 3.27915 3.31198 3.39061 3.41908 3.49952 3.77845 4.07770 4.47561 4.54297 4.57997 4.74370 4.84865 4.96017 4.98849 5.05710 5.09385 5.21128 5.24612 5.29964 5.33553 5.38187 5.44088 5.48820 5.54548 5.61253 5.69056 5.69905 5.77017 5.77375 6.02005 6.17354 6.17667 6.23729 6.27545 6.28498 6.33481 6.37893 6.45790 6.61290 6.71622 6.97346 7.08350 7.16093 7.51605 7.62259 7.96870 8.29366 8.50118 8.95998 9.16458 9.60699 11.07773 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002168 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.512508 B =12910.391339 C =13766.100417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.594 5.594 5 C 0.245 3.755 6 C -0.516 4.516 7 H 0.058 0.942 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.504 3.496 15 O -0.541 6.541 16 C -0.137 4.137 17 C -0.102 4.102 18 C 0.063 3.937 19 O -0.379 6.379 20 C 0.102 3.898 21 C -0.089 4.089 22 C -0.099 4.099 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.098 4.098 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.198 -13.956 -20.597 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.126 3.874 6 C -0.555 4.555 7 H 0.076 0.924 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.291 3.709 15 O -0.418 6.418 16 C -0.178 4.178 17 C -0.140 4.140 18 C -0.013 4.013 19 O -0.299 6.299 20 C 0.026 3.974 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.117 4.117 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.366 -14.269 -19.701 25.144 hybrid contribution 0.572 0.944 0.139 1.112 sum 6.938 -13.325 -19.561 24.665 Atomic orbital electron populations 1.22161 0.95686 1.01743 1.02414 1.20988 0.94033 0.94110 0.88030 1.22142 1.01337 0.95773 1.02258 1.48335 1.49264 1.26491 1.08567 1.19231 0.95845 0.94971 0.77368 1.21477 1.08832 1.23187 1.02018 0.92372 1.24935 0.95762 0.97199 0.96400 1.69942 1.29536 1.43373 1.10671 0.86496 0.81666 0.80794 0.78786 1.19855 1.21076 1.20974 1.20251 0.79222 0.80970 0.90481 1.90679 1.53255 1.58114 1.39783 1.21585 1.00809 0.98330 0.97052 1.21206 1.00972 0.96734 0.95059 1.22580 0.93387 0.86877 0.98471 1.88000 1.69662 1.43885 1.28311 1.21284 0.96706 0.92626 0.86831 1.19647 0.93834 0.94055 1.01382 1.21090 0.99934 0.92102 0.98555 1.21157 0.93980 0.98678 1.00426 1.21203 0.95101 0.97526 0.99630 1.21163 0.99969 0.92714 1.00368 1.21098 0.93175 0.98908 0.98479 0.91315 0.92342 0.92950 0.90737 0.92776 0.93338 0.90077 0.94845 0.94120 0.92893 0.89490 0.89640 0.90427 0.90298 0.93310 0.93364 0.92510 0.92521 0.85899 0.85917 0.86053 0.85903 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.17 37.16 0.34 -2.00 16 2 C 0.13 2.13 3.17 -67.93 -0.22 1.91 16 3 C -0.16 -2.56 8.47 37.16 0.31 -2.24 16 4 N -0.59 -12.41 2.39 -167.47 -0.40 -12.81 16 5 C 0.24 6.34 4.60 -5.19 -0.02 6.32 16 6 C -0.52 -14.41 7.83 -34.44 -0.27 -14.68 16 7 H 0.06 1.63 7.63 -52.48 -0.40 1.23 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 14 C 0.50 10.46 7.67 -10.99 -0.08 10.38 16 15 O -0.54 -13.81 15.56 5.56 0.09 -13.72 16 16 C -0.14 -1.98 4.01 -27.88 -0.11 -2.09 16 17 C -0.10 -1.48 4.87 -26.73 -0.13 -1.61 16 18 C 0.06 0.72 5.94 37.16 0.22 0.94 16 19 O -0.38 -4.89 10.33 -35.23 -0.36 -5.25 16 20 C 0.10 0.99 6.06 36.01 0.22 1.21 16 21 C -0.09 -0.91 5.51 -104.62 -0.58 -1.49 16 22 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 26 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 27 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.96 5.77 -51.93 -0.30 0.66 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 34 H 0.03 0.87 6.43 -51.93 -0.33 0.54 16 35 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.09 1.09 7.79 -51.93 -0.40 0.69 16 38 H 0.09 1.01 7.79 -51.93 -0.40 0.61 16 39 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 44 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 45 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 46 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 49 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -34.05 400.95 -9.69 -43.74 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.40 Total: -0.34 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.38 Total: -8.70 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.34 Total: -38.73 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.28 Total: -18.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.05 -9.69 -43.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.624 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds