Wall clock time and date at job start Tue Mar 31 2020 12:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 N 1.46494 * 109.47349 * 120.00207 * 2 1 3 5 5 C 1.46496 * 120.00028 * 300.00339 * 4 2 1 6 6 C 1.50706 * 109.46980 * 269.99436 * 5 4 2 7 7 H 1.08004 * 119.99946 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00336 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00187 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00161 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47280 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47277 * 120.00294 * 10 8 6 13 13 H 1.48501 * 109.46955 * 239.99897 * 10 8 6 14 14 C 1.34780 * 119.99789 * 119.99401 * 4 2 1 15 15 O 1.21278 * 119.99653 * 180.02562 * 14 4 2 16 16 C 1.50696 * 120.00288 * 0.02562 * 14 4 2 17 17 C 1.53001 * 109.47413 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47162 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.46972 * 180.02562 * 18 17 16 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.09001 * 109.46576 * 299.99981 * 1 2 3 28 28 H 1.09003 * 109.47223 * 59.99430 * 1 2 3 29 29 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47029 * 240.00301 * 2 1 3 31 31 H 1.08997 * 109.47184 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47491 * 300.00406 * 3 2 1 33 33 H 1.09001 * 109.46876 * 60.00208 * 3 2 1 34 34 H 1.08998 * 109.47699 * 29.99234 * 5 4 2 35 35 H 1.09003 * 109.47639 * 149.99963 * 5 4 2 36 36 H 0.97000 * 120.00766 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.47066 * 59.99574 * 16 14 4 38 38 H 1.08993 * 109.46997 * 299.99830 * 16 14 4 39 39 H 1.09001 * 109.46447 * 60.00042 * 17 16 14 40 40 H 1.09005 * 109.47034 * 300.00353 * 17 16 14 41 41 H 1.09005 * 109.47112 * 60.00208 * 18 17 16 42 42 H 1.08993 * 109.47202 * 300.00311 * 18 17 16 43 43 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 44 44 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 45 45 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 46 46 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 49 49 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8017 2.9830 7 1 3.5429 1.0362 2.3454 8 6 2.5813 1.4106 4.2139 9 7 1.5587 1.1255 4.9902 10 14 3.8686 2.6406 4.7792 11 1 4.9101 2.7843 3.7305 12 1 3.2237 3.9562 5.0208 13 1 4.4956 2.1585 6.0361 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0625 16 6 3.1576 -2.3010 -0.2964 17 6 4.0376 -3.5448 -0.1562 18 6 4.4070 -4.0675 -1.5458 19 8 5.2284 -5.2295 -1.4148 20 6 5.6319 -5.7995 -2.6614 21 6 6.4897 -7.0119 -2.4052 22 6 5.9057 -8.2594 -2.2878 23 6 6.6926 -9.3715 -2.0534 24 6 8.0633 -9.2363 -1.9368 25 6 8.6467 -7.9881 -2.0488 26 6 7.8604 -6.8766 -2.2879 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.6905 0.2973 2.4844 35 1 1.6239 -1.0227 3.2291 36 1 1.4726 1.5541 5.8561 37 1 3.7028 -1.5302 -0.8411 38 1 2.2494 -2.5577 -0.8417 39 1 3.4926 -4.3157 0.3886 40 1 4.9458 -3.2877 0.3891 41 1 4.9517 -3.2966 -2.0910 42 1 3.4986 -4.3246 -2.0905 43 1 6.2026 -5.0647 -3.2293 44 1 4.7491 -6.0922 -3.2298 45 1 4.8348 -8.3651 -2.3794 46 1 6.2363 -10.3461 -1.9613 47 1 8.6780 -10.1053 -1.7540 48 1 9.7172 -7.8818 -1.9533 49 1 8.3166 -5.9021 -2.3803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:48 Heat of formation + Delta-G solvation = -92.176392 kcal Electronic energy + Delta-G solvation = -25994.287329 eV Core-core repulsion = 22306.059062 eV Total energy + Delta-G solvation = -3688.228267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.87068 -40.26788 -38.69186 -37.57151 -35.10191 -34.57752 -32.66615 -32.38684 -31.79598 -29.90097 -28.06940 -27.78032 -26.48487 -24.77870 -23.48674 -22.94338 -22.43274 -22.04642 -19.48867 -18.60713 -18.22985 -17.83212 -17.33889 -17.32102 -16.83347 -16.44231 -16.28503 -16.01803 -15.65301 -15.10661 -14.82222 -14.74485 -14.50790 -14.29255 -14.15320 -13.79961 -13.71071 -13.43033 -13.30087 -13.24025 -12.95533 -12.89291 -12.79120 -12.71176 -12.46323 -12.20436 -12.10676 -12.05866 -11.98473 -11.81752 -11.77925 -11.58959 -11.47998 -10.61844 -10.53929 -10.53429 -9.83023 -9.76485 -9.38999 -8.19418 -6.31189 0.33531 0.49180 1.34248 1.37148 1.48205 1.88566 2.28281 2.41807 2.66286 3.09950 3.14905 3.69250 3.87997 3.92204 4.01756 4.02488 4.14283 4.24869 4.29819 4.32954 4.35719 4.36003 4.45768 4.49628 4.56619 4.57741 4.63627 4.67992 4.77038 4.88296 4.91068 5.05168 5.07793 5.08806 5.14138 5.14926 5.16035 5.25901 5.30823 5.46495 5.54149 5.60173 5.60803 5.66327 5.66501 5.92290 6.09256 6.12302 6.29902 6.75601 6.88153 7.32626 7.55155 8.88033 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002168 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.512508 B =12910.391339 C =13766.100417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 C -0.153 4.153 4 N -0.599 5.599 5 C 0.262 3.738 6 C -0.522 4.522 7 H 0.054 0.946 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.285 1.285 14 C 0.490 3.510 15 O -0.604 6.604 16 C -0.120 4.120 17 C -0.098 4.098 18 C 0.070 3.930 19 O -0.411 6.411 20 C 0.101 3.899 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.116 4.116 27 H 0.034 0.966 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.025 0.975 35 H -0.012 1.012 36 H 0.264 0.736 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.142 0.858 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 -13.650 -24.024 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.211 4.211 4 N -0.330 5.330 5 C 0.141 3.859 6 C -0.561 4.561 7 H 0.072 0.928 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.195 1.195 13 H -0.212 1.212 14 C 0.279 3.721 15 O -0.486 6.486 16 C -0.160 4.160 17 C -0.136 4.136 18 C -0.006 4.006 19 O -0.331 6.331 20 C 0.025 3.975 21 C -0.111 4.111 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.134 4.134 27 H 0.053 0.947 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.006 0.994 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.149 0.851 46 H 0.160 0.840 47 H 0.161 0.839 48 H 0.159 0.841 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.962 -13.945 -23.188 27.939 hybrid contribution 0.370 0.783 1.198 1.478 sum 7.331 -13.162 -21.990 26.656 Atomic orbital electron populations 1.22129 0.94437 1.02234 1.02695 1.21461 0.95120 0.93986 0.87268 1.22088 1.00647 0.95970 1.02361 1.48402 1.49319 1.26996 1.08260 1.18631 0.95240 0.92499 0.79543 1.21691 1.08883 1.23312 1.02202 0.92801 1.25834 0.97875 0.99247 0.96603 1.70064 1.31355 1.44656 1.11125 0.85449 0.79083 0.78738 0.78048 1.19060 1.19520 1.21157 1.21497 0.77889 0.80116 0.92567 1.90647 1.55466 1.59890 1.42585 1.21560 1.02812 0.98672 0.92906 1.21113 0.99283 0.96324 0.96927 1.22524 0.94769 0.87176 0.96146 1.87953 1.70173 1.44553 1.30449 1.21435 0.97518 0.92705 0.85852 1.19888 0.94327 0.94657 1.02201 1.21334 1.00653 0.92363 0.98893 1.21479 0.94322 0.99368 0.99904 1.21550 0.95393 0.98235 0.98917 1.21474 1.00999 0.92715 0.99954 1.21330 0.93388 0.99686 0.98969 0.94650 0.88358 0.92401 0.86008 0.93769 0.89063 0.94079 0.95672 0.99387 0.92674 0.86330 0.85611 0.92933 0.93446 0.91111 0.90714 0.91098 0.90873 0.85075 0.84012 0.83853 0.84126 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 9.17 71.98 0.66 -3.51 16 2 C 0.12 3.65 3.17 44.99 0.14 3.79 16 3 C -0.15 -4.65 8.47 71.98 0.61 -4.04 16 4 N -0.60 -25.18 2.39 -802.15 -1.91 -27.09 16 5 C 0.26 14.30 4.60 85.64 0.39 14.69 16 6 C -0.52 -30.18 7.83 25.60 0.20 -29.98 16 7 H 0.05 3.09 7.63 -2.91 -0.02 3.06 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -57.47 13.29 21.44 0.28 -57.19 16 10 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 14 C 0.49 20.48 7.67 87.66 0.67 21.15 16 15 O -0.60 -32.56 15.56 -3.02 -0.05 -32.60 16 16 C -0.12 -3.13 4.01 29.85 0.12 -3.01 16 17 C -0.10 -2.78 4.87 30.59 0.15 -2.63 16 18 C 0.07 1.39 5.94 71.98 0.43 1.82 16 19 O -0.41 -10.08 10.33 -148.98 -1.54 -11.62 16 20 C 0.10 1.79 6.06 71.24 0.43 2.22 16 21 C -0.11 -2.18 5.51 -19.86 -0.11 -2.29 16 22 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 23 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 24 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 26 C -0.12 -2.15 9.70 22.27 0.22 -1.94 16 27 H 0.03 1.17 6.66 -2.39 -0.02 1.15 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 2.49 5.77 -2.39 -0.01 2.47 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.58 6.92 -2.39 -0.02 1.56 16 34 H 0.03 1.40 6.43 -2.39 -0.02 1.38 16 35 H -0.01 -0.77 7.42 -2.39 -0.02 -0.79 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.12 2.43 7.79 -2.38 -0.02 2.41 16 38 H 0.13 2.34 7.79 -2.39 -0.02 2.32 16 39 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 40 H 0.05 1.61 8.10 -2.38 -0.02 1.59 16 41 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.02 8.08 -2.38 -0.02 1.00 16 44 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 45 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 46 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 48 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 49 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -81.14 400.95 4.98 -76.16 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.90 Total: 14.85 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.26 Total: -10.43 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.63 Total: -84.28 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.59 Total: -44.23 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -81.14 4.98 -76.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.015 kcal (2) G-P(sol) polarization free energy of solvation -81.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds